Wall clock time and date at job start Tue Mar 31 2020 06:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47174 * 2 1 4 4 N 1.30168 * 126.80570 * 270.17179 * 3 2 1 5 5 O 1.20928 * 111.60538 * 180.25104 * 4 3 2 6 6 C 1.34036 * 111.56572 * 359.74410 * 5 4 3 7 7 C 1.50699 * 126.77719 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47301 * 270.00165 * 7 6 5 9 9 C 1.35450 * 106.44518 * 0.02562 * 6 5 4 10 10 C 1.50709 * 128.00435 * 179.97438 * 9 6 5 11 11 C 1.50696 * 109.47122 * 89.99756 * 10 9 6 12 12 O 1.21274 * 120.00119 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00065 * 359.97438 * 13 11 10 15 15 C 1.46506 * 120.00000 * 180.02562 * 13 11 10 16 16 H 1.08998 * 109.46566 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.47289 * 119.99453 * 15 13 11 18 18 C 1.50697 * 109.47015 * 239.99910 * 15 13 11 19 19 H 1.07998 * 120.00039 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99815 * 179.97438 * 18 15 13 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47155 * 89.99872 * 22 20 18 24 24 H 1.48495 * 109.46964 * 209.99990 * 22 20 18 25 25 H 1.48499 * 109.46909 * 330.00049 * 22 20 18 26 26 H 1.08992 * 109.47655 * 59.99675 * 1 2 3 27 27 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47213 * 299.99433 * 1 2 3 29 29 H 1.09001 * 109.46546 * 240.00229 * 2 1 3 30 30 H 1.09001 * 109.46912 * 120.00534 * 2 1 3 31 31 H 1.09001 * 109.47409 * 29.99451 * 7 6 5 32 32 H 1.08999 * 109.47294 * 150.00149 * 7 6 5 33 33 H 1.09003 * 109.46745 * 300.00241 * 8 7 6 34 34 H 1.09006 * 109.47306 * 59.99672 * 8 7 6 35 35 H 1.08997 * 109.47683 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.46957 * 329.99821 * 10 9 6 37 37 H 1.09000 * 109.46736 * 209.99778 * 10 9 6 38 38 H 1.09000 * 109.46842 * 270.00180 * 14 13 11 39 39 H 1.08994 * 109.47173 * 30.00714 * 14 13 11 40 40 H 1.08998 * 109.46730 * 150.00747 * 14 13 11 41 41 H 1.09002 * 109.47153 * 179.97438 * 17 15 13 42 42 H 1.09001 * 109.46832 * 60.00146 * 17 15 13 43 43 H 1.09004 * 109.47261 * 300.00128 * 17 15 13 44 44 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1570 -1.0422 5 8 2.6839 3.2553 -0.7252 6 6 2.7357 3.3946 0.6069 7 6 3.1761 4.6174 1.3697 8 6 4.6827 4.5434 1.6261 9 6 2.3152 2.2190 1.1321 10 6 2.1844 1.8463 2.5865 11 6 0.8033 2.2017 3.0738 12 8 0.0042 2.7081 2.3150 13 7 0.4567 1.9576 4.3531 14 6 1.4222 1.3464 5.2698 15 6 -0.8861 2.3025 4.8268 16 1 -1.4574 2.7431 4.0098 17 6 -1.5930 1.0387 5.3207 18 6 -0.7808 3.2936 5.9571 19 1 0.1892 3.6323 6.2897 20 6 -1.9230 3.7679 6.5667 21 7 -3.1042 3.3558 6.1613 22 14 -1.7925 4.9960 7.9683 23 1 -1.8104 6.3761 7.4205 24 1 -2.9403 4.8154 8.8930 25 1 -0.5229 4.7725 8.7055 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9503 5.5103 0.7868 32 1 2.6474 4.6617 2.3219 33 1 4.9087 3.6505 2.2090 34 1 5.2116 4.4991 0.6739 35 1 5.0013 5.4276 2.1782 36 1 2.9268 2.3914 3.1694 37 1 2.3462 0.7747 2.7029 38 1 1.3261 0.2614 5.2281 39 1 2.4324 1.6332 4.9778 40 1 1.2263 1.6897 6.2856 41 1 -2.5919 1.2955 5.6735 42 1 -1.0214 0.5986 6.1378 43 1 -1.6691 0.3219 4.5031 44 1 -3.9078 3.6898 6.5899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087298535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:45 Heat of formation + Delta-G solvation = 5.401014 kcal Electronic energy + Delta-G solvation = -24815.446342 eV Core-core repulsion = 21349.787198 eV Total energy + Delta-G solvation = -3465.659145 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.71594 -39.13956 -35.88006 -35.12386 -34.81371 -32.93224 -31.75793 -30.57073 -29.63380 -27.91057 -26.07807 -25.24014 -24.49709 -23.67362 -22.18225 -20.67643 -19.64236 -18.32373 -17.38003 -16.82154 -16.58277 -16.14369 -15.35941 -15.22798 -14.66181 -14.40673 -14.17076 -14.05299 -13.61458 -13.00906 -12.90196 -12.74209 -12.64025 -12.46427 -12.38790 -12.04191 -11.67205 -11.62067 -11.52536 -11.39877 -11.30974 -11.10914 -11.04762 -10.87479 -10.71654 -10.58429 -10.26279 -10.19662 -9.73349 -9.26045 -9.13273 -8.75017 -8.44355 -7.61181 -6.09773 -4.18019 1.65943 2.38279 3.24685 3.25340 3.30788 3.32134 3.36985 3.99424 4.30038 4.37901 4.52360 4.87807 4.94441 5.07684 5.12601 5.17531 5.21848 5.28859 5.37341 5.42684 5.52198 5.52827 5.70129 5.75085 5.80502 5.84559 5.92211 5.95093 6.01609 6.07382 6.17801 6.27217 6.33165 6.44507 6.73247 6.81218 7.04462 7.40148 7.51534 7.69195 7.99387 8.17630 8.47790 8.50526 8.80902 9.04176 9.48674 10.95506 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.004669 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.479195 B = 5995.121308 C = 6825.629377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C 0.036 3.964 4 N -0.372 5.372 5 O 0.093 5.907 6 C -0.019 4.019 7 C -0.044 4.044 8 C -0.148 4.148 9 C -0.168 4.168 10 C -0.065 4.065 11 C 0.504 3.496 12 O -0.542 6.542 13 N -0.593 5.593 14 C 0.082 3.918 15 C 0.259 3.741 16 H 0.062 0.938 17 C -0.146 4.146 18 C -0.526 4.526 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.887 5.887 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.029 0.971 43 H 0.010 0.990 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.011 -4.255 -6.159 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.123 4.123 4 N -0.078 5.078 5 O 0.029 5.971 6 C -0.082 4.082 7 C -0.082 4.082 8 C -0.205 4.205 9 C -0.172 4.172 10 C -0.105 4.105 11 C 0.290 3.710 12 O -0.420 6.420 13 N -0.325 5.325 14 C -0.062 4.062 15 C 0.159 3.841 16 H 0.080 0.920 17 C -0.204 4.204 18 C -0.565 4.565 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.525 5.525 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.048 0.952 43 H 0.029 0.971 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.293 -4.154 -7.823 15.974 hybrid contribution -0.048 0.537 1.706 1.790 sum 13.245 -3.617 -6.117 15.031 Atomic orbital electron populations 1.21727 0.93522 1.01870 1.03471 1.19901 0.96895 0.88191 1.03027 1.23302 1.01409 0.99081 0.88479 1.73753 1.17321 0.92730 1.23953 1.84742 1.62810 1.26996 1.22522 1.24110 1.02367 0.98170 0.83581 1.20113 0.97011 0.91980 0.99142 1.21773 0.93956 1.02610 1.02172 1.20286 1.06855 0.93909 0.96198 1.20010 0.97379 1.03173 0.89964 1.20190 0.88588 0.79644 0.82543 1.90671 1.52535 1.43973 1.54854 1.48239 1.16042 1.59540 1.08676 1.21620 0.91400 0.96873 0.96327 1.18920 0.76889 0.92793 0.95537 0.91976 1.22076 1.03942 0.96640 0.97750 1.21305 0.92941 1.25085 1.17146 0.92266 1.24894 0.95187 0.96457 0.97225 1.69878 0.97473 1.43463 1.41692 0.86506 0.77632 0.81521 0.81789 1.20622 1.21132 1.19914 0.92642 0.92057 0.91164 0.90516 0.90002 0.89391 0.88380 0.92225 0.92255 0.91299 0.88272 0.88378 0.93864 0.92860 0.90019 0.88911 0.95186 0.97081 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.89 37.16 0.37 -1.73 16 2 C -0.04 -0.55 6.44 -27.89 -0.18 -0.73 16 3 C 0.04 0.57 6.58 -82.11 -0.54 0.03 16 4 N -0.37 -6.25 12.07 33.42 0.40 -5.84 16 5 O 0.09 1.48 11.20 17.19 0.19 1.68 16 6 C -0.02 -0.28 6.74 -35.30 -0.24 -0.51 16 7 C -0.04 -0.51 6.30 -27.88 -0.18 -0.69 16 8 C -0.15 -1.30 9.90 37.16 0.37 -0.93 16 9 C -0.17 -2.59 4.81 -104.42 -0.50 -3.10 16 10 C -0.06 -0.92 4.51 -29.03 -0.13 -1.05 16 11 C 0.50 9.87 7.67 -10.99 -0.08 9.79 16 12 O -0.54 -12.99 15.03 5.56 0.08 -12.91 16 13 N -0.59 -11.98 2.75 -175.27 -0.48 -12.46 16 14 C 0.08 1.27 9.24 59.85 0.55 1.82 16 15 C 0.26 6.42 2.63 -69.08 -0.18 6.24 16 16 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 17 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 18 C -0.53 -13.80 7.99 -34.44 -0.28 -14.07 16 19 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.79 11.32 55.43 0.63 -24.17 16 22 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.21 7.81 -51.93 -0.41 0.81 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 0.91 7.65 -51.93 -0.40 0.52 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.23 8.06 -51.93 -0.42 0.82 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 1.18 7.34 -51.93 -0.38 0.80 16 37 H 0.10 1.17 7.62 -51.93 -0.40 0.78 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 40 H 0.08 1.37 7.02 -51.93 -0.36 1.00 16 41 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 42 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -31.84 361.70 -6.62 -38.46 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.09 Total: 0.58 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -0.78 Total: -6.36 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.55 Total: -42.47 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.28 Total: -11.23 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.84 -6.62 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.858 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds