Wall clock time and date at job start Tue Mar 31 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47174 * 2 1 4 4 N 1.30168 * 126.80570 * 270.17179 * 3 2 1 5 5 O 1.20928 * 111.60538 * 180.25104 * 4 3 2 6 6 C 1.34036 * 111.56572 * 359.74410 * 5 4 3 7 7 C 1.50699 * 126.77719 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.47301 * 270.00165 * 7 6 5 9 9 C 1.35450 * 106.44518 * 0.02562 * 6 5 4 10 10 C 1.50709 * 128.00435 * 179.97438 * 9 6 5 11 11 C 1.50696 * 109.47122 * 89.99756 * 10 9 6 12 12 O 1.21274 * 120.00119 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00065 * 359.97438 * 13 11 10 15 15 C 1.46506 * 120.00000 * 180.02562 * 13 11 10 16 16 H 1.08998 * 109.46566 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.47289 * 119.99453 * 15 13 11 18 18 C 1.50697 * 109.47015 * 239.99910 * 15 13 11 19 19 H 1.07998 * 120.00039 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99815 * 179.97438 * 18 15 13 21 21 N 1.31508 * 119.99915 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 119.99777 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47155 * 89.99872 * 22 20 18 24 24 H 1.48495 * 109.46964 * 209.99990 * 22 20 18 25 25 H 1.48499 * 109.46909 * 330.00049 * 22 20 18 26 26 H 1.08992 * 109.47655 * 59.99675 * 1 2 3 27 27 H 1.09002 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47213 * 299.99433 * 1 2 3 29 29 H 1.09001 * 109.46546 * 240.00229 * 2 1 3 30 30 H 1.09001 * 109.46912 * 120.00534 * 2 1 3 31 31 H 1.09001 * 109.47409 * 29.99451 * 7 6 5 32 32 H 1.08999 * 109.47294 * 150.00149 * 7 6 5 33 33 H 1.09003 * 109.46745 * 300.00241 * 8 7 6 34 34 H 1.09006 * 109.47306 * 59.99672 * 8 7 6 35 35 H 1.08997 * 109.47683 * 180.02562 * 8 7 6 36 36 H 1.09002 * 109.46957 * 329.99821 * 10 9 6 37 37 H 1.09000 * 109.46736 * 209.99778 * 10 9 6 38 38 H 1.09000 * 109.46842 * 270.00180 * 14 13 11 39 39 H 1.08994 * 109.47173 * 30.00714 * 14 13 11 40 40 H 1.08998 * 109.46730 * 150.00747 * 14 13 11 41 41 H 1.09002 * 109.47153 * 179.97438 * 17 15 13 42 42 H 1.09001 * 109.46832 * 60.00146 * 17 15 13 43 43 H 1.09004 * 109.47261 * 300.00128 * 17 15 13 44 44 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2893 2.1570 -1.0422 5 8 2.6839 3.2553 -0.7252 6 6 2.7357 3.3946 0.6069 7 6 3.1761 4.6174 1.3697 8 6 4.6827 4.5434 1.6261 9 6 2.3152 2.2190 1.1321 10 6 2.1844 1.8463 2.5865 11 6 0.8033 2.2017 3.0738 12 8 0.0042 2.7081 2.3150 13 7 0.4567 1.9576 4.3531 14 6 1.4222 1.3464 5.2698 15 6 -0.8861 2.3025 4.8268 16 1 -1.4574 2.7431 4.0098 17 6 -1.5930 1.0387 5.3207 18 6 -0.7808 3.2936 5.9571 19 1 0.1892 3.6323 6.2897 20 6 -1.9230 3.7679 6.5667 21 7 -3.1042 3.3558 6.1613 22 14 -1.7925 4.9960 7.9683 23 1 -1.8104 6.3761 7.4205 24 1 -2.9403 4.8154 8.8930 25 1 -0.5229 4.7725 8.7055 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.9503 5.5103 0.7868 32 1 2.6474 4.6617 2.3219 33 1 4.9087 3.6505 2.2090 34 1 5.2116 4.4991 0.6739 35 1 5.0013 5.4276 2.1782 36 1 2.9268 2.3914 3.1694 37 1 2.3462 0.7747 2.7029 38 1 1.3261 0.2614 5.2281 39 1 2.4324 1.6332 4.9778 40 1 1.2263 1.6897 6.2856 41 1 -2.5919 1.2955 5.6735 42 1 -1.0214 0.5986 6.1378 43 1 -1.6691 0.3219 4.5031 44 1 -3.9078 3.6898 6.5899 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087298535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:44 Heat of formation + Delta-G solvation = -13.131177 kcal Electronic energy + Delta-G solvation = -24816.249958 eV Core-core repulsion = 21349.787198 eV Total energy + Delta-G solvation = -3466.462761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.89017 -40.69424 -37.32151 -36.56325 -35.82818 -34.78070 -32.91215 -31.88206 -31.15310 -29.18568 -27.45895 -27.26902 -25.57568 -24.65237 -23.61083 -22.20202 -20.74373 -19.86051 -18.63935 -18.42173 -18.01875 -17.67858 -16.99980 -16.53971 -16.10515 -15.72144 -15.45754 -15.09282 -14.71667 -14.58666 -14.26795 -14.05396 -13.86814 -13.70426 -13.47087 -13.42432 -13.19454 -12.97284 -12.82110 -12.73690 -12.64228 -12.59680 -12.38443 -12.28162 -12.15712 -12.08470 -12.06395 -11.63844 -11.16915 -10.96111 -10.65012 -10.47282 -10.02002 -9.26081 -8.12240 -6.28574 0.50844 1.19607 1.43163 1.44359 1.54064 1.87608 2.16181 2.37850 2.59818 3.16235 3.19870 3.47360 3.77412 3.87579 3.99308 4.10928 4.27854 4.29741 4.32779 4.43112 4.45870 4.47741 4.62801 4.75061 4.79666 4.83490 4.86532 4.89291 4.92852 5.02904 5.04646 5.10240 5.11368 5.13881 5.16614 5.28343 5.37370 5.51442 5.64425 5.71068 6.07991 6.19804 6.80616 6.90193 7.31011 7.36565 7.55312 8.92012 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.004669 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.479195 B = 5995.121308 C = 6825.629377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.029 3.971 4 N -0.397 5.397 5 O 0.080 5.920 6 C -0.018 4.018 7 C -0.045 4.045 8 C -0.140 4.140 9 C -0.189 4.189 10 C -0.049 4.049 11 C 0.498 3.502 12 O -0.597 6.597 13 N -0.600 5.600 14 C 0.076 3.924 15 C 0.264 3.736 16 H 0.004 0.996 17 C -0.131 4.131 18 C -0.534 4.534 19 H 0.065 0.935 20 C 0.013 3.987 21 N -0.920 5.920 22 Si 0.963 3.037 23 H -0.284 1.284 24 H -0.284 1.284 25 H -0.258 1.258 26 H 0.039 0.961 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.048 0.952 43 H 0.018 0.982 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.886 -4.976 -4.862 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 C -0.130 4.130 4 N -0.106 5.106 5 O 0.019 5.981 6 C -0.081 4.081 7 C -0.084 4.084 8 C -0.198 4.198 9 C -0.193 4.193 10 C -0.089 4.089 11 C 0.287 3.713 12 O -0.479 6.479 13 N -0.330 5.330 14 C -0.067 4.067 15 C 0.161 3.839 16 H 0.022 0.978 17 C -0.190 4.190 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.186 4.186 21 N -0.559 5.559 22 Si 0.788 3.212 23 H -0.210 1.210 24 H -0.209 1.209 25 H -0.182 1.182 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.223 -4.885 -6.507 18.149 hybrid contribution -0.975 0.771 1.245 1.759 sum 15.248 -4.114 -5.262 16.646 Atomic orbital electron populations 1.21651 0.94744 1.02745 1.00811 1.20051 0.95598 0.87168 1.05136 1.23821 1.00596 1.00161 0.88433 1.73736 1.18706 0.93267 1.24882 1.84706 1.63118 1.26946 1.23292 1.24743 1.01160 0.98988 0.83239 1.20275 0.98973 0.90957 0.98168 1.21752 0.91404 1.03853 1.02745 1.20526 1.07697 0.94294 0.96778 1.19999 0.93962 1.05560 0.89349 1.21106 0.90198 0.78290 0.81702 1.90651 1.54700 1.46346 1.56221 1.48209 1.15194 1.59766 1.09875 1.21915 0.92165 0.97974 0.94596 1.18463 0.79245 0.92966 0.93200 0.97777 1.21855 1.02440 0.96275 0.98391 1.21600 0.93155 1.25290 1.17183 0.91674 1.25748 0.94876 0.98263 0.99754 1.70036 0.98142 1.44755 1.42994 0.85479 0.78221 0.78662 0.78801 1.20984 1.20949 1.18158 0.94219 0.89375 0.94808 0.88762 0.87480 0.88747 0.89379 0.91509 0.91964 0.89488 0.85097 0.85127 0.91534 0.88630 0.91371 0.91795 0.93341 0.96316 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 9.89 71.98 0.71 -3.26 16 2 C -0.04 -1.01 6.44 29.85 0.19 -0.82 16 3 C 0.03 0.88 6.58 43.58 0.29 1.17 16 4 N -0.40 -13.32 12.07 -49.57 -0.60 -13.92 16 5 O 0.08 2.56 11.20 71.66 0.80 3.36 16 6 C -0.02 -0.51 6.74 25.04 0.17 -0.34 16 7 C -0.05 -0.99 6.30 29.85 0.19 -0.80 16 8 C -0.14 -2.08 9.90 71.98 0.71 -1.36 16 9 C -0.19 -5.55 4.81 -19.73 -0.10 -5.65 16 10 C -0.05 -1.26 4.51 29.10 0.13 -1.13 16 11 C 0.50 19.21 7.67 87.66 0.67 19.88 16 12 O -0.60 -29.69 15.03 -3.01 -0.05 -29.74 16 13 N -0.60 -23.63 2.75 -826.82 -2.28 -25.90 16 14 C 0.08 2.09 9.24 127.77 1.18 3.27 16 15 C 0.26 13.36 2.63 44.24 0.12 13.48 16 16 H 0.00 0.26 6.90 -2.39 -0.02 0.25 16 17 C -0.13 -6.21 8.97 71.98 0.65 -5.56 16 18 C -0.53 -28.12 7.99 25.60 0.20 -27.91 16 19 H 0.07 3.27 7.33 -2.91 -0.02 3.25 16 20 C 0.01 0.69 5.30 84.66 0.45 1.14 16 21 N -0.92 -52.90 11.32 21.45 0.24 -52.66 16 22 Si 0.96 42.17 29.54 68.60 2.03 44.20 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.03 1.19 7.81 -2.39 -0.02 1.17 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.11 2.04 7.65 -2.39 -0.02 2.02 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.11 8.06 -2.39 -0.02 2.09 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.13 2.53 7.34 -2.39 -0.02 2.51 16 37 H 0.13 2.52 7.62 -2.39 -0.02 2.50 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.82 6.44 -2.39 -0.02 1.80 16 40 H 0.07 2.09 7.02 -2.39 -0.02 2.08 16 41 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 42 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 43 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -73.72 361.70 6.70 -67.02 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.98 Total: 15.53 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.56 Total: -7.89 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.63 Total: -92.48 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: 0.76 Total: -26.38 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -73.72 6.70 -67.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.891 kcal (2) G-P(sol) polarization free energy of solvation -73.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds