Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47050 * 2 1 4 4 N 1.30170 * 126.79976 * 270.16324 * 3 2 1 5 5 O 1.20920 * 111.60867 * 180.25348 * 4 3 2 6 6 C 1.34046 * 111.56205 * 359.74255 * 5 4 3 7 7 C 1.50699 * 126.77823 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47280 * 270.00617 * 7 6 5 9 9 C 1.35453 * 106.44774 * 0.02562 * 6 5 4 10 10 C 1.50695 * 128.00997 * 179.97438 * 9 6 5 11 11 C 1.50702 * 109.47377 * 89.99410 * 10 9 6 12 12 O 1.21282 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99838 * 0.02562 * 13 11 10 15 15 C 1.46500 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.09001 * 109.47297 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46998 * 240.00425 * 15 13 11 18 18 C 1.50698 * 109.46840 * 120.00599 * 15 13 11 19 19 H 1.07993 * 120.00472 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31515 * 120.00420 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99716 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47510 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47309 * 119.99914 * 22 20 18 25 25 H 1.48498 * 109.47163 * 239.99790 * 22 20 18 26 26 H 1.09002 * 109.47144 * 299.99914 * 1 2 3 27 27 H 1.08996 * 109.47460 * 60.00585 * 1 2 3 28 28 H 1.09003 * 109.47259 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47390 * 239.99643 * 2 1 3 30 30 H 1.09002 * 109.46806 * 119.99573 * 2 1 3 31 31 H 1.08998 * 109.46796 * 30.00505 * 7 6 5 32 32 H 1.08995 * 109.47284 * 150.00274 * 7 6 5 33 33 H 1.08999 * 109.47038 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.46607 * 299.99593 * 8 7 6 35 35 H 1.08995 * 109.47242 * 59.99631 * 8 7 6 36 36 H 1.09002 * 109.47241 * 329.99751 * 10 9 6 37 37 H 1.08996 * 109.47235 * 210.00194 * 10 9 6 38 38 H 1.08999 * 109.46748 * 269.99069 * 14 13 11 39 39 H 1.08997 * 109.47257 * 29.99586 * 14 13 11 40 40 H 1.09002 * 109.46769 * 149.99443 * 14 13 11 41 41 H 1.09001 * 109.47002 * 179.97438 * 17 15 13 42 42 H 1.08993 * 109.46955 * 300.00226 * 17 15 13 43 43 H 1.09000 * 109.47050 * 60.00054 * 17 15 13 44 44 H 0.97001 * 120.00306 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2894 2.1570 -1.0423 5 8 2.6839 3.2553 -0.7255 6 6 2.7356 3.3948 0.6067 7 6 3.1760 4.6176 1.3694 8 6 4.6826 4.5437 1.6258 9 6 2.3150 2.2192 1.1320 10 6 2.1840 1.8467 2.5863 11 6 0.8029 2.2022 3.0735 12 8 0.0036 2.7078 2.3143 13 7 0.4557 1.9574 4.3525 14 6 1.4212 1.3461 5.2694 15 6 -0.8870 2.3024 4.8260 16 1 -1.4584 2.7430 4.0089 17 6 -0.7802 3.3079 5.9743 18 6 -1.5837 1.0575 5.3116 19 1 -1.0769 0.1047 5.2719 20 6 -2.8683 1.1351 5.8065 21 7 -3.4854 2.2954 5.8552 22 14 -3.7322 -0.4082 6.4077 23 1 -2.8291 -1.5759 6.2464 24 1 -4.0869 -0.2504 7.8411 25 1 -4.9678 -0.6252 5.6131 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9500 5.5104 0.7863 32 1 2.6471 4.6620 2.3215 33 1 5.0011 5.4284 2.1771 34 1 4.9084 3.6510 2.2090 35 1 5.2114 4.4993 0.6738 36 1 2.9264 2.3918 3.1694 37 1 2.3459 0.7752 2.7030 38 1 1.3255 0.2611 5.2273 39 1 2.4314 1.6335 4.9779 40 1 1.2248 1.6890 6.2853 41 1 -1.7792 3.5650 6.3263 42 1 -0.2090 2.8671 6.7912 43 1 -0.2762 4.2084 5.6231 44 1 -4.3890 2.3500 6.2038 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087298537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = 6.206180 kcal Electronic energy + Delta-G solvation = -24827.024227 eV Core-core repulsion = 21361.399997 eV Total energy + Delta-G solvation = -3465.624230 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.71682 -39.14386 -35.87819 -35.11636 -34.83361 -32.92998 -31.74099 -30.56019 -29.63900 -27.90910 -26.12231 -25.22736 -24.47127 -23.68198 -22.17577 -20.67136 -19.62758 -18.32311 -17.38258 -16.83774 -16.58803 -16.11213 -15.35484 -15.25450 -14.69359 -14.40498 -14.18147 -14.01051 -13.59698 -12.98780 -12.88767 -12.79349 -12.67784 -12.51686 -12.37088 -12.05818 -11.66189 -11.58092 -11.54645 -11.39576 -11.27814 -11.10164 -11.03569 -10.81938 -10.72080 -10.57046 -10.25829 -10.19357 -9.71821 -9.24203 -9.13320 -8.75676 -8.44544 -7.61011 -6.09266 -4.17195 1.65313 2.39193 3.24034 3.24697 3.31380 3.33642 3.37570 3.99404 4.31602 4.38871 4.51727 4.87254 4.91892 5.05595 5.11871 5.15637 5.21855 5.29480 5.42337 5.44053 5.52543 5.55753 5.68502 5.70603 5.80642 5.82474 5.93525 5.99036 6.03735 6.05824 6.22334 6.25878 6.29199 6.54770 6.73318 6.78983 7.03026 7.40877 7.50190 7.69672 7.99505 8.17587 8.48409 8.50548 8.82033 9.04054 9.49655 10.96025 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.004630 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.270107 B = 6045.794291 C = 6868.592469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C 0.038 3.962 4 N -0.372 5.372 5 O 0.093 5.907 6 C -0.022 4.022 7 C -0.043 4.043 8 C -0.148 4.148 9 C -0.167 4.167 10 C -0.065 4.065 11 C 0.504 3.496 12 O -0.542 6.542 13 N -0.594 5.594 14 C 0.085 3.915 15 C 0.258 3.742 16 H 0.063 0.937 17 C -0.147 4.147 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.030 0.970 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.640 0.186 -4.898 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.121 4.121 4 N -0.077 5.077 5 O 0.029 5.971 6 C -0.086 4.086 7 C -0.081 4.081 8 C -0.206 4.206 9 C -0.171 4.171 10 C -0.105 4.105 11 C 0.290 3.710 12 O -0.420 6.420 13 N -0.325 5.325 14 C -0.059 4.059 15 C 0.158 3.842 16 H 0.081 0.919 17 C -0.205 4.205 18 C -0.562 4.562 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.030 0.970 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.948 0.348 -6.549 16.323 hybrid contribution -0.611 -0.992 1.285 1.735 sum 14.337 -0.644 -5.263 15.286 Atomic orbital electron populations 1.21731 0.93357 1.02027 1.03528 1.19914 0.97027 0.88096 1.03014 1.23328 1.01213 0.99131 0.88422 1.73754 1.17332 0.92711 1.23941 1.84743 1.62825 1.27029 1.22461 1.24086 1.02658 0.98156 0.83675 1.20086 0.96977 0.92029 0.98992 1.21776 0.93975 1.02563 1.02247 1.20289 1.06709 0.93881 0.96226 1.20012 0.97258 1.03347 0.89931 1.20184 0.88556 0.79706 0.82515 1.90673 1.52491 1.44317 1.54561 1.48236 1.15865 1.59440 1.08983 1.21579 0.90887 0.97971 0.95471 1.18933 0.76780 0.94492 0.93988 0.91937 1.22093 1.03094 0.96499 0.98834 1.21345 0.99251 0.93705 1.41944 0.92263 1.24893 0.97085 0.96227 0.95588 1.69887 1.13150 1.23522 1.46048 0.86460 0.79620 0.83082 0.78341 1.19819 1.20943 1.20935 0.90916 0.92743 0.92005 0.90563 0.89963 0.89417 0.88603 0.91345 0.92195 0.92206 0.88383 0.88247 0.93247 0.92998 0.90792 0.88838 0.95106 0.97030 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.89 37.16 0.37 -1.90 16 2 C -0.04 -0.58 6.44 -27.88 -0.18 -0.76 16 3 C 0.04 0.61 6.58 -82.10 -0.54 0.07 16 4 N -0.37 -6.29 12.07 33.42 0.40 -5.89 16 5 O 0.09 1.47 11.20 17.16 0.19 1.67 16 6 C -0.02 -0.32 6.74 -35.30 -0.24 -0.56 16 7 C -0.04 -0.46 6.30 -27.88 -0.18 -0.64 16 8 C -0.15 -1.21 9.90 37.16 0.37 -0.84 16 9 C -0.17 -2.57 4.81 -104.42 -0.50 -3.07 16 10 C -0.06 -0.92 4.51 -29.04 -0.13 -1.06 16 11 C 0.50 9.86 7.67 -10.99 -0.08 9.77 16 12 O -0.54 -12.97 15.03 5.56 0.08 -12.89 16 13 N -0.59 -11.96 2.75 -175.25 -0.48 -12.45 16 14 C 0.08 1.31 9.48 59.85 0.57 1.88 16 15 C 0.26 6.40 2.64 -69.08 -0.18 6.22 16 16 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 17 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 18 C -0.52 -13.83 8.37 -34.44 -0.29 -14.12 16 19 H 0.06 1.54 7.64 -52.49 -0.40 1.14 16 20 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 22 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H 0.07 1.36 7.81 -51.93 -0.41 0.95 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.08 0.99 7.65 -51.93 -0.40 0.59 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.09 8.06 -51.93 -0.42 0.68 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 1.11 7.34 -51.93 -0.38 0.73 16 37 H 0.10 1.23 7.62 -51.93 -0.40 0.84 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 40 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 41 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 42 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 43 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -32.02 361.01 -6.56 -38.59 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.03 Total: 0.43 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -0.78 Total: -6.44 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.55 Total: -42.56 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.28 Total: -11.22 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.02 -6.56 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.795 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds