Wall clock time and date at job start Tue Mar 31 2020 06:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47050 * 2 1 4 4 N 1.30170 * 126.79976 * 270.16324 * 3 2 1 5 5 O 1.20920 * 111.60867 * 180.25348 * 4 3 2 6 6 C 1.34046 * 111.56205 * 359.74255 * 5 4 3 7 7 C 1.50699 * 126.77823 * 179.97438 * 6 5 4 8 8 C 1.53004 * 109.47280 * 270.00617 * 7 6 5 9 9 C 1.35453 * 106.44774 * 0.02562 * 6 5 4 10 10 C 1.50695 * 128.00997 * 179.97438 * 9 6 5 11 11 C 1.50702 * 109.47377 * 89.99410 * 10 9 6 12 12 O 1.21282 * 119.99614 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99838 * 0.02562 * 13 11 10 15 15 C 1.46500 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.09001 * 109.47297 * 0.02562 * 15 13 11 17 17 C 1.53006 * 109.46998 * 240.00425 * 15 13 11 18 18 C 1.50698 * 109.46840 * 120.00599 * 15 13 11 19 19 H 1.07993 * 120.00472 * 0.02562 * 18 15 13 20 20 C 1.37882 * 119.99554 * 180.02562 * 18 15 13 21 21 N 1.31515 * 120.00420 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99716 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.47510 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47309 * 119.99914 * 22 20 18 25 25 H 1.48498 * 109.47163 * 239.99790 * 22 20 18 26 26 H 1.09002 * 109.47144 * 299.99914 * 1 2 3 27 27 H 1.08996 * 109.47460 * 60.00585 * 1 2 3 28 28 H 1.09003 * 109.47259 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47390 * 239.99643 * 2 1 3 30 30 H 1.09002 * 109.46806 * 119.99573 * 2 1 3 31 31 H 1.08998 * 109.46796 * 30.00505 * 7 6 5 32 32 H 1.08995 * 109.47284 * 150.00274 * 7 6 5 33 33 H 1.08999 * 109.47038 * 179.97438 * 8 7 6 34 34 H 1.08996 * 109.46607 * 299.99593 * 8 7 6 35 35 H 1.08995 * 109.47242 * 59.99631 * 8 7 6 36 36 H 1.09002 * 109.47241 * 329.99751 * 10 9 6 37 37 H 1.08996 * 109.47235 * 210.00194 * 10 9 6 38 38 H 1.08999 * 109.46748 * 269.99069 * 14 13 11 39 39 H 1.08997 * 109.47257 * 29.99586 * 14 13 11 40 40 H 1.09002 * 109.46769 * 149.99443 * 14 13 11 41 41 H 1.09001 * 109.47002 * 179.97438 * 17 15 13 42 42 H 1.08993 * 109.46955 * 300.00226 * 17 15 13 43 43 H 1.09000 * 109.47050 * 60.00054 * 17 15 13 44 44 H 0.97001 * 120.00306 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2894 2.1570 -1.0423 5 8 2.6839 3.2553 -0.7255 6 6 2.7356 3.3948 0.6067 7 6 3.1760 4.6176 1.3694 8 6 4.6826 4.5437 1.6258 9 6 2.3150 2.2192 1.1320 10 6 2.1840 1.8467 2.5863 11 6 0.8029 2.2022 3.0735 12 8 0.0036 2.7078 2.3143 13 7 0.4557 1.9574 4.3525 14 6 1.4212 1.3461 5.2694 15 6 -0.8870 2.3024 4.8260 16 1 -1.4584 2.7430 4.0089 17 6 -0.7802 3.3079 5.9743 18 6 -1.5837 1.0575 5.3116 19 1 -1.0769 0.1047 5.2719 20 6 -2.8683 1.1351 5.8065 21 7 -3.4854 2.2954 5.8552 22 14 -3.7322 -0.4082 6.4077 23 1 -2.8291 -1.5759 6.2464 24 1 -4.0869 -0.2504 7.8411 25 1 -4.9678 -0.6252 5.6131 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.9500 5.5104 0.7863 32 1 2.6471 4.6620 2.3215 33 1 5.0011 5.4284 2.1771 34 1 4.9084 3.6510 2.2090 35 1 5.2114 4.4993 0.6738 36 1 2.9264 2.3918 3.1694 37 1 2.3459 0.7752 2.7030 38 1 1.3255 0.2611 5.2273 39 1 2.4314 1.6335 4.9779 40 1 1.2248 1.6890 6.2853 41 1 -1.7792 3.5650 6.3263 42 1 -0.2090 2.8671 6.7912 43 1 -0.2762 4.2084 5.6231 44 1 -4.3890 2.3500 6.2038 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087298537.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:47 Heat of formation + Delta-G solvation = -12.541390 kcal Electronic energy + Delta-G solvation = -24827.837182 eV Core-core repulsion = 21361.399997 eV Total energy + Delta-G solvation = -3466.437186 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.89517 -40.69621 -37.32748 -36.56601 -35.82457 -34.78627 -32.91325 -31.88790 -31.14671 -29.17933 -27.52005 -27.23981 -25.58167 -24.64612 -23.60353 -22.20080 -20.73088 -19.86322 -18.63353 -18.44661 -18.03215 -17.65140 -17.00133 -16.55125 -16.13732 -15.74376 -15.42917 -15.09496 -14.69074 -14.62683 -14.33488 -14.05022 -13.89896 -13.71664 -13.43620 -13.42220 -13.19161 -12.97336 -12.90091 -12.67920 -12.61529 -12.56835 -12.39119 -12.27289 -12.15719 -12.09282 -12.07017 -11.63538 -11.14464 -10.95907 -10.65215 -10.48127 -10.01851 -9.26345 -8.12946 -6.28974 0.51543 1.19117 1.40627 1.43011 1.53550 1.87338 2.17372 2.37551 2.59308 3.15374 3.19187 3.47558 3.78361 3.86523 3.99373 4.10501 4.27729 4.29492 4.34143 4.42484 4.45975 4.47104 4.62041 4.71485 4.78947 4.84782 4.87689 4.88707 4.92328 5.02931 5.05975 5.09059 5.11128 5.14116 5.17336 5.27976 5.39147 5.50330 5.67336 5.71395 6.07908 6.19574 6.80281 6.90169 7.31778 7.36296 7.55129 8.91237 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018609 B = 0.004630 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.270107 B = 6045.794291 C = 6868.592469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C 0.027 3.973 4 N -0.398 5.398 5 O 0.082 5.918 6 C -0.017 4.017 7 C -0.044 4.044 8 C -0.141 4.141 9 C -0.189 4.189 10 C -0.049 4.049 11 C 0.498 3.502 12 O -0.597 6.597 13 N -0.600 5.600 14 C 0.079 3.921 15 C 0.263 3.737 16 H 0.005 0.995 17 C -0.132 4.132 18 C -0.532 4.532 19 H 0.061 0.939 20 C 0.014 3.986 21 N -0.919 5.919 22 Si 0.961 3.039 23 H -0.263 1.263 24 H -0.275 1.275 25 H -0.289 1.289 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.021 0.979 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.224 -1.145 -3.833 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 C -0.132 4.132 4 N -0.106 5.106 5 O 0.021 5.979 6 C -0.081 4.081 7 C -0.082 4.082 8 C -0.198 4.198 9 C -0.193 4.193 10 C -0.089 4.089 11 C 0.287 3.713 12 O -0.479 6.479 13 N -0.331 5.331 14 C -0.063 4.063 15 C 0.161 3.839 16 H 0.023 0.977 17 C -0.191 4.191 18 C -0.571 4.571 19 H 0.080 0.920 20 C -0.185 4.185 21 N -0.558 5.558 22 Si 0.787 3.213 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.215 1.215 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.040 0.960 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.585 -0.990 -5.464 18.441 hybrid contribution -1.431 -0.519 0.907 1.772 sum 16.155 -1.509 -4.557 16.853 Atomic orbital electron populations 1.21644 0.94900 1.02630 1.00796 1.20024 0.95444 0.87437 1.05005 1.23791 1.00697 1.00076 0.88613 1.73734 1.18687 0.93300 1.24835 1.84705 1.63010 1.26840 1.23374 1.24783 1.01105 0.98993 0.83197 1.20291 0.98923 0.90785 0.98242 1.21758 0.91461 1.03897 1.02724 1.20519 1.07719 0.94340 0.96724 1.19999 0.94035 1.05410 0.89442 1.21106 0.90200 0.78343 0.81644 1.90653 1.54671 1.46660 1.55907 1.48207 1.14955 1.59706 1.10197 1.21882 0.91979 0.98120 0.94358 1.18477 0.79022 0.94110 0.92333 0.97717 1.21869 1.01769 0.96666 0.98778 1.21618 0.99691 0.94268 1.41527 0.92036 1.25718 0.97916 0.99020 0.95887 1.70034 1.13387 1.25532 1.46896 0.85458 0.78182 0.79784 0.77900 1.18675 1.20075 1.21508 0.94923 0.94074 0.89693 0.88746 0.87740 0.88632 0.89030 0.89315 0.91522 0.92147 0.84586 0.85644 0.92571 0.88140 0.91174 0.91773 0.93158 0.95994 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.89 71.98 0.71 -3.64 16 2 C -0.04 -1.08 6.44 29.85 0.19 -0.89 16 3 C 0.03 0.85 6.58 43.58 0.29 1.13 16 4 N -0.40 -13.43 12.07 -49.56 -0.60 -14.02 16 5 O 0.08 2.59 11.20 71.58 0.80 3.39 16 6 C -0.02 -0.48 6.74 25.04 0.17 -0.31 16 7 C -0.04 -0.87 6.30 29.85 0.19 -0.69 16 8 C -0.14 -1.86 9.90 71.98 0.71 -1.15 16 9 C -0.19 -5.54 4.81 -19.74 -0.10 -5.64 16 10 C -0.05 -1.26 4.51 29.10 0.13 -1.13 16 11 C 0.50 19.19 7.67 87.66 0.67 19.86 16 12 O -0.60 -29.63 15.03 -3.04 -0.05 -29.68 16 13 N -0.60 -23.63 2.75 -826.77 -2.28 -25.91 16 14 C 0.08 2.18 9.48 127.77 1.21 3.39 16 15 C 0.26 13.31 2.64 44.25 0.12 13.43 16 16 H 0.00 0.30 6.90 -2.39 -0.02 0.28 16 17 C -0.13 -6.19 8.95 71.98 0.64 -5.54 16 18 C -0.53 -28.33 8.37 25.60 0.21 -28.11 16 19 H 0.06 3.17 7.64 -2.91 -0.02 3.14 16 20 C 0.01 0.75 5.30 84.66 0.45 1.20 16 21 N -0.92 -52.87 11.32 21.45 0.24 -52.63 16 22 Si 0.96 42.66 29.54 68.60 2.03 44.69 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 26 H 0.03 1.25 7.81 -2.39 -0.02 1.23 16 27 H 0.04 1.32 8.14 -2.39 -0.02 1.31 16 28 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.10 2.23 7.65 -2.39 -0.02 2.21 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.92 8.06 -2.39 -0.02 1.90 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.14 2.44 7.34 -2.39 -0.02 2.42 16 37 H 0.13 2.59 7.62 -2.39 -0.02 2.58 16 38 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 1.79 6.44 -2.39 -0.02 1.77 16 40 H 0.07 2.00 6.43 -2.39 -0.02 1.99 16 41 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 42 H 0.05 2.10 6.66 -2.39 -0.02 2.08 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -74.16 361.01 6.74 -67.42 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.98 Total: 14.82 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 5.60 Total: -8.08 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -2.63 Total: -92.56 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: 0.76 Total: -26.29 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.16 6.74 -67.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298537.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.877 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds