Wall clock time and date at job start Tue Mar 31 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47095 * 2 1 4 4 C 1.34227 * 116.99818 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00197 * 180.02562 * 4 3 2 7 7 C 1.50699 * 109.47365 * 179.97438 * 6 4 3 8 8 C 1.39868 * 126.03758 * 270.02131 * 7 6 4 9 9 C 1.50697 * 125.90315 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46822 * 89.99859 * 9 8 7 11 11 N 1.30842 * 108.19983 * 179.97438 * 8 7 6 12 12 N 1.40084 * 108.20507 * 359.78347 * 11 8 7 13 13 C 1.46497 * 126.03640 * 180.23479 * 12 11 8 14 14 C 1.50697 * 109.47305 * 270.14966 * 13 12 11 15 15 H 1.08003 * 119.99630 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00258 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99951 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46890 * 90.00364 * 18 16 14 20 20 H 1.48500 * 109.47065 * 209.99909 * 18 16 14 21 21 H 1.48490 * 109.47079 * 330.00023 * 18 16 14 22 22 C 1.34944 * 107.92632 * 0.35958 * 12 11 8 23 23 C 1.50703 * 126.12731 * 179.90759 * 22 12 11 24 24 C 1.53000 * 109.46912 * 89.69312 * 23 22 12 25 25 H 1.09002 * 109.47301 * 60.00284 * 1 2 3 26 26 H 1.09003 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47498 * 300.00001 * 1 2 3 28 28 H 1.08995 * 109.47194 * 239.99636 * 2 1 3 29 29 H 1.09007 * 109.46827 * 119.99767 * 2 1 3 30 30 H 1.09001 * 109.47100 * 59.99293 * 6 4 3 31 31 H 1.09005 * 109.46617 * 300.00064 * 6 4 3 32 32 H 1.08995 * 109.47284 * 210.00100 * 9 8 7 33 33 H 1.09002 * 109.46924 * 330.00159 * 9 8 7 34 34 H 1.09006 * 109.46879 * 180.02562 * 10 9 8 35 35 H 1.08995 * 109.47388 * 300.00178 * 10 9 8 36 36 H 1.09002 * 109.47126 * 60.00424 * 10 9 8 37 37 H 1.09007 * 109.47523 * 30.14954 * 13 12 11 38 38 H 1.09006 * 109.47221 * 150.14971 * 13 12 11 39 39 H 0.96998 * 120.00145 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47152 * 329.69084 * 23 22 12 41 41 H 1.09001 * 109.46980 * 209.69184 * 23 22 12 42 42 H 1.09001 * 109.47194 * 299.99742 * 24 23 22 43 43 H 1.08992 * 109.47399 * 59.99914 * 24 23 22 44 44 H 1.09004 * 109.46724 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0012 7 6 5.4257 2.8585 0.0023 8 6 6.2465 2.8148 1.1340 9 6 5.7788 2.8380 2.5663 10 6 5.5455 1.4053 3.0499 11 7 7.4906 2.7492 0.7341 12 7 7.5004 2.7441 -0.6667 13 6 8.6892 2.6750 -1.5200 14 6 9.1781 4.0697 -1.8142 15 1 8.6552 4.9224 -1.4067 16 6 10.2928 4.2573 -2.6036 17 7 10.9292 3.2191 -3.1003 18 14 10.8983 5.9863 -2.9690 19 1 11.8725 6.4000 -1.9273 20 1 11.5570 6.0093 -4.2997 21 1 9.7470 6.9241 -2.9703 22 6 6.2216 2.8168 -1.0912 23 6 5.7618 2.8406 -2.5262 24 6 5.5308 1.4082 -3.0116 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.5844 3.4693 0.8911 31 1 3.5851 3.4697 -0.8889 32 1 6.5375 3.3125 3.1886 33 1 4.8480 3.4009 2.6355 34 1 5.2068 1.4221 4.0858 35 1 4.7869 0.9308 2.4276 36 1 6.4764 0.8424 2.9807 37 1 9.4723 2.1161 -1.0076 38 1 8.4371 2.1736 -2.4545 39 1 11.7137 3.3511 -3.6554 40 1 6.5240 3.3153 -3.1441 41 1 4.8315 3.4038 -2.6003 42 1 6.4612 0.8450 -2.9375 43 1 4.7687 0.9336 -2.3938 44 1 5.1987 1.4255 -4.0497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092308133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:03 Heat of formation + Delta-G solvation = -44.736412 kcal Electronic energy + Delta-G solvation = -24508.741044 eV Core-core repulsion = 21040.907778 eV Total energy + Delta-G solvation = -3467.833267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.88802 -39.95547 -36.47456 -34.72336 -33.59283 -32.91851 -32.01149 -31.27972 -30.01990 -27.56489 -26.21256 -23.96724 -23.54885 -22.94406 -22.07619 -20.97973 -18.75688 -18.57515 -17.51821 -16.71881 -16.55047 -16.04034 -15.56443 -14.67615 -14.52779 -14.22305 -13.94917 -13.92114 -13.42742 -13.29095 -13.14526 -12.95125 -12.58127 -12.39603 -12.27390 -12.10338 -11.79695 -11.68911 -11.67093 -11.49789 -11.21660 -10.97930 -10.91234 -10.81320 -10.67617 -10.61092 -10.43749 -10.25390 -10.19184 -9.74776 -9.63468 -8.64675 -8.19808 -7.56279 -6.26087 -4.33839 2.48147 2.56536 2.90129 3.21128 3.27400 3.30877 3.48944 3.60678 4.29200 4.78281 4.82155 4.97307 5.06113 5.09356 5.12406 5.15707 5.30968 5.39144 5.47386 5.48312 5.60344 5.62561 5.68521 5.71477 5.77988 5.81362 5.94144 6.02681 6.08888 6.12453 6.20930 6.31693 6.47469 6.50249 6.58044 6.61882 6.83544 7.03316 7.11018 7.48229 7.65980 7.88465 8.03078 8.04997 8.66481 8.75445 9.32567 10.81531 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.004136 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.328728 B = 6768.457260 C = 7473.042834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.367 6.367 4 C 0.455 3.545 5 O -0.490 6.490 6 C -0.019 4.019 7 C -0.262 4.262 8 C 0.068 3.932 9 C -0.038 4.038 10 C -0.141 4.141 11 N -0.293 5.293 12 N -0.320 5.320 13 C 0.257 3.743 14 C -0.536 4.536 15 H 0.064 0.936 16 C 0.066 3.934 17 N -0.891 5.891 18 Si 0.906 3.094 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.116 3.884 23 C -0.065 4.065 24 C -0.142 4.142 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.268 0.732 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.084 -3.334 4.858 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.285 6.285 4 C 0.297 3.703 5 O -0.375 6.375 6 C -0.058 4.058 7 C -0.274 4.274 8 C -0.097 4.097 9 C -0.077 4.077 10 C -0.200 4.200 11 N -0.115 5.115 12 N -0.098 5.098 13 C 0.139 3.861 14 C -0.575 4.575 15 H 0.083 0.917 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.733 3.267 19 H -0.203 1.203 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.016 4.016 23 C -0.104 4.104 24 C -0.200 4.200 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.290 -3.798 5.002 18.396 hybrid contribution -0.209 0.698 -0.569 0.925 sum -17.499 -3.100 4.433 18.316 Atomic orbital electron populations 1.21793 0.92989 1.02687 1.03376 1.22924 0.95020 0.80960 1.02400 1.86519 1.25486 1.31756 1.84730 1.24219 0.79807 0.93668 0.72599 1.90669 1.60154 1.42939 1.43731 1.19401 0.91642 0.89819 1.04939 1.18648 0.92844 1.23916 0.92012 1.21803 0.90867 1.01644 0.95373 1.19808 1.00579 0.97665 0.89633 1.21681 1.02272 0.96205 0.99809 1.77282 1.19475 1.24418 0.90372 1.49207 1.06187 1.50645 1.03788 1.19675 0.79670 0.98914 0.87828 1.21307 1.12698 0.91550 1.31944 0.91741 1.24934 0.95824 0.97879 0.95143 1.69925 1.19660 1.29753 1.33521 0.86354 0.79070 0.83535 0.77720 1.20316 1.20891 1.19643 1.20640 0.85632 0.99668 0.95705 1.20196 1.01797 0.98193 0.90179 1.21679 1.02253 0.95841 1.00189 0.91567 0.90558 0.91589 0.91500 0.91529 0.87904 0.88014 0.90854 0.90995 0.92881 0.92611 0.92515 0.93053 0.93028 0.92249 0.89266 0.90453 0.92481 0.92649 0.92472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.15 0.38 -0.68 16 2 C 0.06 0.62 6.19 37.15 0.23 0.85 16 3 O -0.37 -4.54 10.22 -39.25 -0.40 -4.94 16 4 C 0.46 6.59 7.79 36.01 0.28 6.87 16 5 O -0.49 -8.66 14.25 -18.75 -0.27 -8.93 16 6 C -0.02 -0.26 5.89 -29.04 -0.17 -0.44 16 7 C -0.26 -4.79 4.59 -105.05 -0.48 -5.27 16 8 C 0.07 1.33 6.47 -82.41 -0.53 0.80 16 9 C -0.04 -0.57 6.31 -27.88 -0.18 -0.74 16 10 C -0.14 -2.00 9.89 37.16 0.37 -1.64 16 11 N -0.29 -6.89 12.58 33.67 0.42 -6.47 16 12 N -0.32 -7.64 3.60 -58.31 -0.21 -7.85 16 13 C 0.26 6.71 5.82 -5.20 -0.03 6.68 16 14 C -0.54 -14.83 9.39 -34.44 -0.32 -15.15 16 15 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 18 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.12 2.36 6.18 -82.26 -0.51 1.85 16 23 C -0.06 -1.11 5.73 -27.88 -0.16 -1.27 16 24 C -0.14 -2.26 9.89 37.16 0.37 -1.89 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.10 1.16 7.26 -51.93 -0.38 0.79 16 31 H 0.10 1.19 7.15 -51.93 -0.37 0.82 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.89 7.25 -51.93 -0.38 0.51 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.84 7.39 -51.93 -0.38 0.46 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.05 1.35 7.66 -51.93 -0.40 0.95 16 39 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.09 1.67 7.74 -51.93 -0.40 1.27 16 41 H 0.08 1.09 7.15 -51.93 -0.37 0.72 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.05 0.89 7.16 -51.93 -0.37 0.52 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -31.97 369.11 -7.28 -39.24 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.25 Total: 0.13 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -0.85 Total: -8.34 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.95 Total: -38.84 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.67 Total: -13.86 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.97 -7.28 -39.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092308133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.492 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds