Wall clock time and date at job start Tue Mar 31 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45201 * 109.47095 * 2 1 4 4 C 1.34227 * 116.99818 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00055 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00197 * 180.02562 * 4 3 2 7 7 C 1.50699 * 109.47365 * 179.97438 * 6 4 3 8 8 C 1.39868 * 126.03758 * 270.02131 * 7 6 4 9 9 C 1.50697 * 125.90315 * 0.02562 * 8 7 6 10 10 C 1.53000 * 109.46822 * 89.99859 * 9 8 7 11 11 N 1.30842 * 108.19983 * 179.97438 * 8 7 6 12 12 N 1.40084 * 108.20507 * 359.78347 * 11 8 7 13 13 C 1.46497 * 126.03640 * 180.23479 * 12 11 8 14 14 C 1.50697 * 109.47305 * 270.14966 * 13 12 11 15 15 H 1.08003 * 119.99630 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00258 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99951 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46890 * 90.00364 * 18 16 14 20 20 H 1.48500 * 109.47065 * 209.99909 * 18 16 14 21 21 H 1.48490 * 109.47079 * 330.00023 * 18 16 14 22 22 C 1.34944 * 107.92632 * 0.35958 * 12 11 8 23 23 C 1.50703 * 126.12731 * 179.90759 * 22 12 11 24 24 C 1.53000 * 109.46912 * 89.69312 * 23 22 12 25 25 H 1.09002 * 109.47301 * 60.00284 * 1 2 3 26 26 H 1.09003 * 109.47638 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47498 * 300.00001 * 1 2 3 28 28 H 1.08995 * 109.47194 * 239.99636 * 2 1 3 29 29 H 1.09007 * 109.46827 * 119.99767 * 2 1 3 30 30 H 1.09001 * 109.47100 * 59.99293 * 6 4 3 31 31 H 1.09005 * 109.46617 * 300.00064 * 6 4 3 32 32 H 1.08995 * 109.47284 * 210.00100 * 9 8 7 33 33 H 1.09002 * 109.46924 * 330.00159 * 9 8 7 34 34 H 1.09006 * 109.46879 * 180.02562 * 10 9 8 35 35 H 1.08995 * 109.47388 * 300.00178 * 10 9 8 36 36 H 1.09002 * 109.47126 * 60.00424 * 10 9 8 37 37 H 1.09007 * 109.47523 * 30.14954 * 13 12 11 38 38 H 1.09006 * 109.47221 * 150.14971 * 13 12 11 39 39 H 0.96998 * 120.00145 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47152 * 329.69084 * 23 22 12 41 41 H 1.09001 * 109.46980 * 209.69184 * 23 22 12 42 42 H 1.09001 * 109.47194 * 299.99742 * 24 23 22 43 43 H 1.08992 * 109.47399 * 59.99914 * 24 23 22 44 44 H 1.09004 * 109.46724 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0012 7 6 5.4257 2.8585 0.0023 8 6 6.2465 2.8148 1.1340 9 6 5.7788 2.8380 2.5663 10 6 5.5455 1.4053 3.0499 11 7 7.4906 2.7492 0.7341 12 7 7.5004 2.7441 -0.6667 13 6 8.6892 2.6750 -1.5200 14 6 9.1781 4.0697 -1.8142 15 1 8.6552 4.9224 -1.4067 16 6 10.2928 4.2573 -2.6036 17 7 10.9292 3.2191 -3.1003 18 14 10.8983 5.9863 -2.9690 19 1 11.8725 6.4000 -1.9273 20 1 11.5570 6.0093 -4.2997 21 1 9.7470 6.9241 -2.9703 22 6 6.2216 2.8168 -1.0912 23 6 5.7618 2.8406 -2.5262 24 6 5.5308 1.4082 -3.0116 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.5844 3.4693 0.8911 31 1 3.5851 3.4697 -0.8889 32 1 6.5375 3.3125 3.1886 33 1 4.8480 3.4009 2.6355 34 1 5.2068 1.4221 4.0858 35 1 4.7869 0.9308 2.4276 36 1 6.4764 0.8424 2.9807 37 1 9.4723 2.1161 -1.0076 38 1 8.4371 2.1736 -2.4545 39 1 11.7137 3.3511 -3.6554 40 1 6.5240 3.3153 -3.1441 41 1 4.8315 3.4038 -2.6003 42 1 6.4612 0.8450 -2.9375 43 1 4.7687 0.9336 -2.3938 44 1 5.1987 1.4255 -4.0497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092308133.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:02 Heat of formation + Delta-G solvation = -62.815096 kcal Electronic energy + Delta-G solvation = -24509.524995 eV Core-core repulsion = 21040.907778 eV Total energy + Delta-G solvation = -3468.617217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.37086 -41.12875 -37.56160 -36.32045 -35.22191 -34.59539 -33.00976 -32.46206 -31.55292 -29.19075 -27.81785 -25.60799 -24.64702 -24.15366 -23.56424 -22.11546 -20.22757 -20.08859 -18.85134 -18.57301 -17.63513 -17.34285 -17.02607 -16.29213 -15.96531 -15.67206 -15.32624 -14.97688 -14.86283 -14.52635 -14.39131 -14.24988 -13.89222 -13.66548 -13.47889 -13.45856 -13.24330 -13.10832 -12.79012 -12.73959 -12.66569 -12.49467 -12.41023 -12.26989 -12.10501 -11.96518 -11.87655 -11.74455 -11.41252 -11.35827 -11.17243 -10.76656 -9.89304 -9.14706 -8.35723 -6.54255 1.13492 1.35934 1.37275 1.37813 1.48467 1.59440 1.89806 2.22716 2.32988 2.93888 3.68445 3.74488 3.95903 4.06524 4.07182 4.17498 4.20309 4.25868 4.31114 4.36249 4.43146 4.48635 4.57960 4.65656 4.71141 4.77197 4.86033 4.90956 4.94124 4.97102 4.99132 5.00070 5.02311 5.22330 5.26342 5.28654 5.35029 5.49165 5.53662 5.59725 5.77824 5.99096 6.28373 6.60271 6.95692 7.08768 7.17378 8.71116 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021170 B = 0.004136 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.328728 B = 6768.457260 C = 7473.042834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.053 3.947 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.530 6.530 6 C -0.020 4.020 7 C -0.254 4.254 8 C 0.069 3.931 9 C -0.038 4.038 10 C -0.133 4.133 11 N -0.350 5.350 12 N -0.352 5.352 13 C 0.277 3.723 14 C -0.551 4.551 15 H 0.053 0.947 16 C 0.019 3.981 17 N -0.921 5.921 18 Si 0.976 3.024 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.264 1.264 22 C 0.099 3.901 23 C -0.063 4.063 24 C -0.132 4.132 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.029 0.971 37 H 0.013 0.987 38 H 0.041 0.959 39 H 0.273 0.727 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.025 0.975 43 H 0.055 0.945 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.162 -1.844 5.187 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 O -0.277 6.277 4 C 0.307 3.693 5 O -0.418 6.418 6 C -0.058 4.058 7 C -0.265 4.265 8 C -0.096 4.096 9 C -0.077 4.077 10 C -0.191 4.191 11 N -0.172 5.172 12 N -0.131 5.131 13 C 0.158 3.842 14 C -0.590 4.590 15 H 0.071 0.929 16 C -0.181 4.181 17 N -0.559 5.559 18 Si 0.799 3.201 19 H -0.201 1.201 20 H -0.195 1.195 21 H -0.189 1.189 22 C -0.032 4.032 23 C -0.102 4.102 24 C -0.190 4.190 25 H 0.089 0.911 26 H 0.113 0.887 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.093 0.907 33 H 0.128 0.872 34 H 0.107 0.893 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.031 0.969 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.045 0.955 43 H 0.074 0.926 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.417 -2.310 5.334 21.228 hybrid contribution 0.633 0.147 -0.598 0.884 sum -19.784 -2.163 4.735 20.457 Atomic orbital electron populations 1.21803 0.90298 1.04136 1.03861 1.23196 0.97069 0.79775 1.02010 1.86509 1.24037 1.33079 1.84091 1.24230 0.80256 0.93335 0.71503 1.90679 1.61168 1.44209 1.45756 1.19565 0.88187 0.90094 1.07941 1.19105 0.95246 1.21608 0.90581 1.22671 0.89967 0.99060 0.97884 1.20053 1.02175 0.98749 0.86749 1.21608 1.00689 0.95046 1.01765 1.77203 1.22273 1.27225 0.90484 1.48950 1.06575 1.53588 1.03984 1.19095 0.80071 0.97760 0.87281 1.21431 1.13349 0.91701 1.32474 0.92864 1.25829 0.95621 1.02155 0.94540 1.70028 1.20063 1.31981 1.33850 0.85289 0.78567 0.78327 0.77921 1.20071 1.19534 1.18868 1.21367 0.84635 0.99289 0.97880 1.20321 1.02698 0.99133 0.88022 1.21602 1.00685 0.94657 1.02031 0.91147 0.88659 0.90982 0.92108 0.91888 0.84584 0.85256 0.90705 0.87248 0.89307 0.93550 0.95143 0.96899 0.94122 0.91756 0.91453 0.86570 0.95536 0.92639 0.89439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 10.29 71.98 0.74 -0.86 16 2 C 0.05 0.97 6.19 71.98 0.45 1.42 16 3 O -0.36 -7.86 10.22 -51.39 -0.53 -8.39 16 4 C 0.46 12.32 7.79 71.24 0.55 12.87 16 5 O -0.53 -18.33 14.25 21.96 0.31 -18.02 16 6 C -0.02 -0.48 5.89 29.10 0.17 -0.31 16 7 C -0.25 -9.00 4.59 -20.14 -0.09 -9.09 16 8 C 0.07 2.71 6.47 43.10 0.28 2.98 16 9 C -0.04 -1.08 6.31 29.85 0.19 -0.89 16 10 C -0.13 -3.57 9.89 71.98 0.71 -2.86 16 11 N -0.35 -17.16 12.58 -47.39 -0.60 -17.75 16 12 N -0.35 -17.67 3.60 -338.40 -1.22 -18.89 16 13 C 0.28 15.52 5.82 85.63 0.50 16.01 16 14 C -0.55 -31.79 9.39 25.60 0.24 -31.55 16 15 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 16 C 0.02 1.08 5.46 84.65 0.46 1.54 16 17 N -0.92 -53.78 13.29 21.45 0.28 -53.50 16 18 Si 0.98 43.68 29.54 68.60 2.03 45.71 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 22 C 0.10 4.08 6.18 41.41 0.26 4.33 16 23 C -0.06 -2.14 5.73 29.85 0.17 -1.97 16 24 C -0.13 -4.19 9.89 71.98 0.71 -3.48 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 29 H 0.06 1.20 8.13 -2.38 -0.02 1.18 16 30 H 0.14 2.41 7.26 -2.39 -0.02 2.39 16 31 H 0.13 2.45 7.15 -2.38 -0.02 2.43 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 33 H 0.11 2.27 7.25 -2.39 -0.02 2.25 16 34 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.05 1.33 7.39 -2.39 -0.02 1.31 16 36 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.01 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.04 2.30 7.66 -2.38 -0.02 2.28 16 39 H 0.27 14.85 8.31 -92.71 -0.77 14.07 16 40 H 0.07 2.58 7.74 -2.39 -0.02 2.56 16 41 H 0.12 2.96 7.15 -2.39 -0.02 2.95 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 1.75 7.16 -2.39 -0.02 1.74 16 44 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.01 369.11 6.60 -67.42 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.97 Total: 15.27 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 5.34 Total: -11.85 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -1.53 Total: -90.14 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.21 Total: -26.41 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -74.01 6.60 -67.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092308133.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.600 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds