Wall clock time and date at job start Tue Mar 31 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 C 1.53000 * 109.47006 * 65.00560 * 3 2 1 5 5 C 1.53000 * 109.47234 * 185.67072 * 4 3 2 6 6 C 1.53006 * 109.46979 * 185.00378 * 3 2 1 7 7 N 1.46494 * 109.46856 * 65.59381 * 6 3 2 8 8 C 1.46507 * 120.00007 * 263.96242 * 7 6 3 9 9 C 1.50694 * 109.47327 * 263.85351 * 8 7 6 10 10 H 1.08003 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00358 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00398 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99571 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47022 * 90.00591 * 13 11 9 15 15 H 1.48507 * 109.47214 * 210.00160 * 13 11 9 16 16 H 1.48498 * 109.47482 * 330.00006 * 13 11 9 17 17 C 1.34771 * 120.00554 * 83.97140 * 7 6 3 18 18 O 1.21500 * 119.99791 * 354.78498 * 17 7 6 19 19 C 1.48327 * 120.00690 * 174.51682 * 17 7 6 20 20 C 1.42265 * 126.94213 * 181.20950 * 19 17 7 21 21 C 1.35315 * 103.92561 * 179.97438 * 20 19 17 22 22 C 1.50697 * 126.67303 * 179.97438 * 21 20 19 23 23 O 1.34024 * 106.66694 * 359.97438 * 21 20 19 24 24 N 1.20909 * 111.84358 * 359.70797 * 23 21 20 25 25 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46768 * 299.99490 * 1 2 3 27 27 H 1.08995 * 109.47539 * 59.99395 * 1 2 3 28 28 H 1.09008 * 109.46768 * 240.00510 * 2 1 3 29 29 H 1.08995 * 109.47539 * 120.00605 * 2 1 3 30 30 H 1.09000 * 109.47397 * 305.00274 * 3 2 1 31 31 H 1.09004 * 109.47240 * 305.67211 * 4 3 2 32 32 H 1.09004 * 109.47003 * 65.66966 * 4 3 2 33 33 H 1.08996 * 109.46866 * 184.10287 * 5 4 3 34 34 H 1.09006 * 109.46894 * 304.09679 * 5 4 3 35 35 H 1.08994 * 109.47017 * 64.09872 * 5 4 3 36 36 H 1.09002 * 109.47017 * 305.59208 * 6 3 2 37 37 H 1.08999 * 109.46817 * 185.59256 * 6 3 2 38 38 H 1.09008 * 109.46663 * 23.84609 * 8 7 6 39 39 H 1.08989 * 109.47362 * 143.84646 * 8 7 6 40 40 H 0.97005 * 119.99757 * 179.97438 * 12 11 9 41 41 H 1.07996 * 128.04154 * 0.02562 * 20 19 17 42 42 H 1.08994 * 109.47009 * 89.99609 * 22 21 20 43 43 H 1.08993 * 109.47451 * 210.00202 * 22 21 20 44 44 H 1.09001 * 109.46709 * 329.99983 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.0204 3.6061 1.2494 6 6 3.5649 1.4443 -0.1258 7 7 3.9474 0.9109 -1.4355 8 6 4.3088 -0.5021 -1.5739 9 6 5.8073 -0.6463 -1.5059 10 1 6.4284 0.2272 -1.3733 11 6 6.3855 -1.8932 -1.6140 12 7 7.6934 -2.0191 -1.5552 13 14 5.3113 -3.4041 -1.8441 14 1 5.1043 -3.6481 -3.2943 15 1 5.9775 -4.5828 -1.2340 16 1 3.9982 -3.1826 -1.1870 17 6 3.9669 1.7200 -2.5131 18 8 3.5772 2.8670 -2.4188 19 6 4.4698 1.2123 -3.8129 20 6 4.5783 1.9397 -5.0308 21 6 5.0855 1.0389 -5.9040 22 6 5.4050 1.2758 -7.3575 23 8 5.2485 -0.1050 -5.2249 24 7 4.9103 0.0057 -4.0694 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6054 1.9816 -0.8418 31 1 0.5580 2.0366 1.4462 32 1 2.1502 1.6495 2.1415 33 1 1.7989 4.0769 2.2071 34 1 3.0860 3.6962 1.0381 35 1 1.4508 4.0991 0.4617 36 1 3.9950 0.8225 0.6594 37 1 3.9364 2.4641 -0.0262 38 1 3.8518 -1.0747 -0.7668 39 1 3.9509 -0.8764 -2.5329 40 1 8.1001 -2.8965 -1.6309 41 1 4.3175 2.9713 -5.2153 42 1 6.4346 1.6208 -7.4516 43 1 5.2810 0.3462 -7.9130 44 1 4.7303 2.0318 -7.7592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104543450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:05 Heat of formation + Delta-G solvation = 17.033462 kcal Electronic energy + Delta-G solvation = -25055.703851 eV Core-core repulsion = 21590.549128 eV Total energy + Delta-G solvation = -3465.154724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.43388 -39.38007 -36.98122 -34.77471 -33.59550 -32.68385 -32.35220 -31.61619 -28.80814 -27.45322 -27.32465 -24.92300 -23.21398 -22.72135 -22.27693 -21.54004 -19.75398 -18.35545 -17.31494 -16.85621 -16.74607 -16.11480 -15.71270 -14.80152 -14.43979 -14.11378 -13.92655 -13.85255 -13.57653 -13.40266 -13.21011 -13.07199 -12.94937 -12.60185 -12.42227 -12.20371 -11.87810 -11.81531 -11.56813 -11.20364 -11.12014 -10.96718 -10.75805 -10.48422 -10.33918 -10.22757 -10.15832 -9.97920 -9.81875 -9.58663 -9.42572 -8.93773 -8.56144 -7.78243 -6.10043 -4.07674 1.85306 2.16410 3.27590 3.32330 3.35073 3.45226 3.65264 3.88672 4.38759 4.64407 4.86812 4.99222 5.06150 5.16511 5.23769 5.31412 5.40529 5.47587 5.50764 5.55031 5.59352 5.61521 5.75097 5.85855 5.88244 5.91820 5.98116 6.03109 6.08536 6.14866 6.22074 6.30026 6.32151 6.35756 6.45277 6.54152 6.61305 6.69317 6.84213 7.33355 7.55585 8.04241 8.43734 8.64543 8.86382 8.92822 9.50763 11.03251 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.006912 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.072441 B = 4049.869366 C = 5542.426788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.103 4.103 4 C -0.115 4.115 5 C -0.153 4.153 6 C 0.125 3.875 7 N -0.573 5.573 8 C 0.203 3.797 9 C -0.518 4.518 10 H 0.072 0.928 11 C 0.083 3.917 12 N -0.895 5.895 13 Si 0.868 3.132 14 H -0.270 1.270 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.598 3.402 18 O -0.556 6.556 19 C -0.034 4.034 20 C -0.188 4.188 21 C -0.062 4.062 22 C -0.068 4.068 23 O 0.118 5.882 24 N -0.264 5.264 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.043 0.957 40 H 0.264 0.736 41 H 0.171 0.829 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 5.760 -4.019 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.122 4.122 4 C -0.153 4.153 5 C -0.210 4.210 6 C 0.002 3.998 7 N -0.302 5.302 8 C 0.082 3.918 9 C -0.557 4.557 10 H 0.090 0.910 11 C -0.120 4.120 12 N -0.534 5.534 13 Si 0.695 3.305 14 H -0.196 1.196 15 H -0.212 1.212 16 H -0.192 1.192 17 C 0.385 3.615 18 O -0.435 6.435 19 C -0.193 4.193 20 C -0.211 4.211 21 C -0.124 4.124 22 C -0.125 4.125 23 O 0.039 5.961 24 N 0.038 4.962 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.188 0.812 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.327 5.117 -3.137 11.945 hybrid contribution -0.351 -0.218 -0.351 0.542 sum -10.678 4.899 -3.488 12.255 Atomic orbital electron populations 1.21805 0.96390 1.01055 1.01423 1.21655 0.95323 0.96619 1.02580 1.21605 0.96256 0.96069 0.98319 1.21540 1.00937 0.95643 0.97197 1.21821 1.02213 0.96112 1.00895 1.21526 0.93637 1.00058 0.84545 1.47817 1.63649 1.11900 1.06843 1.20135 0.97533 0.76375 0.97747 1.21154 0.89300 0.94934 1.50283 0.91033 1.24725 0.94638 0.98465 0.94142 1.69893 1.09378 1.23961 1.50120 0.86969 0.81072 0.83137 0.79285 1.19577 1.21224 1.19160 1.16890 0.77968 0.84641 0.82046 1.90679 1.50037 1.18095 1.84736 1.23327 1.06999 0.91640 0.97299 1.22263 1.06055 1.01818 0.90928 1.24365 1.03650 0.86781 0.97611 1.20234 1.03019 1.03362 0.85891 1.84936 1.61286 1.33585 1.16289 1.74869 1.08937 1.19091 0.93280 0.93190 0.92756 0.93117 0.91424 0.91979 0.90703 0.91882 0.92027 0.93306 0.92193 0.92816 0.90003 0.90563 0.94628 0.93935 0.92606 0.81186 0.89782 0.90121 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.68 37.16 0.36 -1.52 16 2 C -0.12 -1.87 4.82 -26.73 -0.13 -2.00 16 3 C -0.10 -1.59 2.01 -90.62 -0.18 -1.77 16 4 C -0.12 -1.46 5.27 -26.73 -0.14 -1.60 16 5 C -0.15 -1.91 9.77 37.16 0.36 -1.55 16 6 C 0.13 2.29 4.59 -4.04 -0.02 2.27 16 7 N -0.57 -12.35 2.21 -175.99 -0.39 -12.74 16 8 C 0.20 4.78 2.72 -5.19 -0.01 4.77 16 9 C -0.52 -14.30 8.41 -34.44 -0.29 -14.59 16 10 H 0.07 2.23 8.06 -52.48 -0.42 1.81 16 11 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 12 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 13 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 16 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 17 C 0.60 13.26 7.59 -12.11 -0.09 13.16 16 18 O -0.56 -12.57 16.50 5.37 0.09 -12.48 16 19 C -0.03 -0.72 6.78 -82.53 -0.56 -1.28 16 20 C -0.19 -3.22 10.92 -39.08 -0.43 -3.65 16 21 C -0.06 -0.95 7.47 -35.35 -0.26 -1.21 16 22 C -0.07 -0.64 10.45 36.00 0.38 -0.27 16 23 O 0.12 2.30 11.18 17.22 0.19 2.49 16 24 N -0.26 -5.92 7.77 33.29 0.26 -5.67 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.61 6.45 -51.92 -0.33 0.27 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.17 6.06 -51.92 -0.31 0.86 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 31 H 0.06 0.72 6.32 -51.93 -0.33 0.40 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.81 6.30 -51.93 -0.33 0.49 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 37 H 0.08 1.41 5.82 -51.93 -0.30 1.11 16 38 H 0.04 0.82 5.90 -51.92 -0.31 0.51 16 39 H 0.04 1.04 5.27 -51.94 -0.27 0.76 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 41 H 0.17 2.49 8.06 -52.49 -0.42 2.06 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -32.23 351.59 -6.39 -38.62 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.83 Total: 1.19 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -1.11 Total: -6.98 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.64 Total: -44.61 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.28 Total: -10.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.23 -6.39 -38.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104543450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.658 kcal (2) G-P(sol) polarization free energy of solvation -32.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds