Wall clock time and date at job start Tue Mar 31 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 C 1.53000 * 109.47006 * 65.00560 * 3 2 1 5 5 C 1.53000 * 109.47234 * 185.67072 * 4 3 2 6 6 C 1.53006 * 109.46979 * 185.00378 * 3 2 1 7 7 N 1.46494 * 109.46856 * 65.59381 * 6 3 2 8 8 C 1.46507 * 120.00007 * 263.96242 * 7 6 3 9 9 C 1.50694 * 109.47327 * 263.85351 * 8 7 6 10 10 H 1.08003 * 120.00041 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00358 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00398 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99571 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47022 * 90.00591 * 13 11 9 15 15 H 1.48507 * 109.47214 * 210.00160 * 13 11 9 16 16 H 1.48498 * 109.47482 * 330.00006 * 13 11 9 17 17 C 1.34771 * 120.00554 * 83.97140 * 7 6 3 18 18 O 1.21500 * 119.99791 * 354.78498 * 17 7 6 19 19 C 1.48327 * 120.00690 * 174.51682 * 17 7 6 20 20 C 1.42265 * 126.94213 * 181.20950 * 19 17 7 21 21 C 1.35315 * 103.92561 * 179.97438 * 20 19 17 22 22 C 1.50697 * 126.67303 * 179.97438 * 21 20 19 23 23 O 1.34024 * 106.66694 * 359.97438 * 21 20 19 24 24 N 1.20909 * 111.84358 * 359.70797 * 23 21 20 25 25 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46768 * 299.99490 * 1 2 3 27 27 H 1.08995 * 109.47539 * 59.99395 * 1 2 3 28 28 H 1.09008 * 109.46768 * 240.00510 * 2 1 3 29 29 H 1.08995 * 109.47539 * 120.00605 * 2 1 3 30 30 H 1.09000 * 109.47397 * 305.00274 * 3 2 1 31 31 H 1.09004 * 109.47240 * 305.67211 * 4 3 2 32 32 H 1.09004 * 109.47003 * 65.66966 * 4 3 2 33 33 H 1.08996 * 109.46866 * 184.10287 * 5 4 3 34 34 H 1.09006 * 109.46894 * 304.09679 * 5 4 3 35 35 H 1.08994 * 109.47017 * 64.09872 * 5 4 3 36 36 H 1.09002 * 109.47017 * 305.59208 * 6 3 2 37 37 H 1.08999 * 109.46817 * 185.59256 * 6 3 2 38 38 H 1.09008 * 109.46663 * 23.84609 * 8 7 6 39 39 H 1.08989 * 109.47362 * 143.84646 * 8 7 6 40 40 H 0.97005 * 119.99757 * 179.97438 * 12 11 9 41 41 H 1.07996 * 128.04154 * 0.02562 * 20 19 17 42 42 H 1.08994 * 109.47009 * 89.99609 * 22 21 20 43 43 H 1.08993 * 109.47451 * 210.00202 * 22 21 20 44 44 H 1.09001 * 109.46709 * 329.99983 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6354 2.1265 1.3074 5 6 2.0204 3.6061 1.2494 6 6 3.5649 1.4443 -0.1258 7 7 3.9474 0.9109 -1.4355 8 6 4.3088 -0.5021 -1.5739 9 6 5.8073 -0.6463 -1.5059 10 1 6.4284 0.2272 -1.3733 11 6 6.3855 -1.8932 -1.6140 12 7 7.6934 -2.0191 -1.5552 13 14 5.3113 -3.4041 -1.8441 14 1 5.1043 -3.6481 -3.2943 15 1 5.9775 -4.5828 -1.2340 16 1 3.9982 -3.1826 -1.1870 17 6 3.9669 1.7200 -2.5131 18 8 3.5772 2.8670 -2.4188 19 6 4.4698 1.2123 -3.8129 20 6 4.5783 1.9397 -5.0308 21 6 5.0855 1.0389 -5.9040 22 6 5.4050 1.2758 -7.3575 23 8 5.2485 -0.1050 -5.2249 24 7 4.9103 0.0057 -4.0694 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6054 1.9816 -0.8418 31 1 0.5580 2.0366 1.4462 32 1 2.1502 1.6495 2.1415 33 1 1.7989 4.0769 2.2071 34 1 3.0860 3.6962 1.0381 35 1 1.4508 4.0991 0.4617 36 1 3.9950 0.8225 0.6594 37 1 3.9364 2.4641 -0.0262 38 1 3.8518 -1.0747 -0.7668 39 1 3.9509 -0.8764 -2.5329 40 1 8.1001 -2.8965 -1.6309 41 1 4.3175 2.9713 -5.2153 42 1 6.4346 1.6208 -7.4516 43 1 5.2810 0.3462 -7.9130 44 1 4.7303 2.0318 -7.7592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104543450.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:04 Heat of formation + Delta-G solvation = -1.923647 kcal Electronic energy + Delta-G solvation = -25056.525893 eV Core-core repulsion = 21590.549128 eV Total energy + Delta-G solvation = -3465.976766 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.95423 -41.03169 -38.36644 -36.48289 -34.96274 -34.45473 -34.03341 -32.68441 -30.49350 -28.98218 -28.56860 -26.29386 -24.95067 -24.20632 -23.54007 -23.06466 -21.03247 -19.88412 -19.20012 -18.64217 -18.30302 -17.72573 -17.26873 -16.48655 -15.90428 -15.70831 -15.29192 -15.04796 -14.98331 -14.72008 -14.47525 -14.41213 -14.17614 -14.08839 -13.89990 -13.61597 -13.08392 -12.97093 -12.93305 -12.70258 -12.63252 -12.34027 -12.24655 -12.02785 -11.92141 -11.71561 -11.53952 -11.43700 -11.37681 -11.29645 -11.11830 -10.76217 -10.23200 -9.53201 -8.29533 -6.31946 0.32100 0.78924 1.32796 1.36877 1.42539 1.93873 2.18770 2.32856 2.33904 3.05124 3.10418 3.57637 3.78581 3.88212 3.97126 4.09356 4.18422 4.34891 4.37756 4.41503 4.45095 4.57717 4.63367 4.69184 4.73237 4.79520 4.85915 4.88786 4.90243 4.93073 4.97352 5.06466 5.09617 5.23610 5.23804 5.29121 5.36918 5.44211 5.45688 5.50155 5.66064 6.10556 6.41256 6.64741 6.98275 7.30549 7.34348 8.87710 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011219 B = 0.006912 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.072441 B = 4049.869366 C = 5542.426788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C -0.092 4.092 4 C -0.109 4.109 5 C -0.152 4.152 6 C 0.119 3.881 7 N -0.577 5.577 8 C 0.220 3.780 9 C -0.511 4.511 10 H 0.020 0.980 11 C 0.031 3.969 12 N -0.944 5.944 13 Si 0.929 3.071 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.244 1.244 17 C 0.590 3.410 18 O -0.568 6.568 19 C -0.063 4.063 20 C -0.200 4.200 21 C -0.037 4.037 22 C -0.066 4.066 23 O 0.109 5.891 24 N -0.308 5.308 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.266 0.734 41 H 0.194 0.806 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 5.550 -4.753 14.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.111 4.111 4 C -0.147 4.147 5 C -0.209 4.209 6 C -0.003 4.003 7 N -0.306 5.306 8 C 0.098 3.902 9 C -0.550 4.550 10 H 0.038 0.962 11 C -0.167 4.167 12 N -0.584 5.584 13 Si 0.752 3.248 14 H -0.192 1.192 15 H -0.206 1.206 16 H -0.167 1.167 17 C 0.377 3.623 18 O -0.448 6.448 19 C -0.221 4.221 20 C -0.222 4.222 21 C -0.100 4.100 22 C -0.123 4.123 23 O 0.031 5.969 24 N -0.007 5.007 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.211 0.789 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.474 4.922 -3.854 13.953 hybrid contribution 0.402 -0.017 -0.219 0.458 sum -12.071 4.906 -4.073 13.652 Atomic orbital electron populations 1.21757 0.94120 1.01985 1.02187 1.21645 0.97338 0.95749 1.01525 1.21494 0.93538 0.96760 0.99345 1.21529 1.02292 0.95292 0.95575 1.21805 1.00897 0.96284 1.01929 1.21741 0.96051 0.99369 0.83105 1.47874 1.63549 1.11219 1.07970 1.19827 0.94668 0.77785 0.97928 1.21167 0.90949 0.93200 1.49654 0.96183 1.25514 0.95774 1.01671 0.93745 1.70038 1.11473 1.24887 1.52005 0.85991 0.80194 0.79007 0.79563 1.19156 1.20631 1.16714 1.17177 0.77832 0.84643 0.82680 1.90645 1.50705 1.18337 1.85135 1.23588 1.07807 0.92527 0.98190 1.22587 1.06944 1.03088 0.89618 1.25383 1.00547 0.84600 0.99453 1.20597 1.04677 1.05345 0.81721 1.84855 1.60980 1.35349 1.15764 1.74824 1.10827 1.20142 0.94877 0.92223 0.90826 0.93491 0.94087 0.91373 0.92512 0.89757 0.91088 0.91044 0.94003 0.93387 0.90121 0.91255 0.93550 0.93961 0.92457 0.78906 0.88095 0.88312 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.68 71.98 0.70 -2.57 16 2 C -0.13 -3.62 4.82 30.59 0.15 -3.47 16 3 C -0.09 -2.79 2.01 -10.79 -0.02 -2.82 16 4 C -0.11 -2.56 5.27 30.59 0.16 -2.40 16 5 C -0.15 -3.62 9.77 71.98 0.70 -2.91 16 6 C 0.12 4.47 4.59 86.38 0.40 4.86 16 7 N -0.58 -25.71 2.21 -829.02 -1.83 -27.54 16 8 C 0.22 10.56 2.72 85.63 0.23 10.79 16 9 C -0.51 -29.29 8.41 25.60 0.22 -29.08 16 10 H 0.02 1.32 8.06 -2.91 -0.02 1.30 16 11 C 0.03 1.81 5.47 84.65 0.46 2.28 16 12 N -0.94 -58.71 13.96 21.45 0.30 -58.41 16 13 Si 0.93 43.64 27.47 68.60 1.88 45.53 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 17 C 0.59 27.01 7.59 86.93 0.66 27.67 16 18 O -0.57 -26.35 16.50 -3.72 -0.06 -26.41 16 19 C -0.06 -2.76 6.78 42.96 0.29 -2.47 16 20 C -0.20 -6.71 10.92 22.60 0.25 -6.47 16 21 C -0.04 -1.09 7.47 25.01 0.19 -0.90 16 22 C -0.07 -1.03 10.45 71.24 0.74 -0.29 16 23 O 0.11 4.24 11.18 71.80 0.80 5.04 16 24 N -0.31 -14.12 7.77 -49.51 -0.38 -14.50 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.07 1.39 6.45 -2.38 -0.02 1.38 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 1.40 6.06 -2.38 -0.01 1.38 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.94 7.95 -2.39 -0.02 1.92 16 31 H 0.08 1.66 6.32 -2.38 -0.02 1.65 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.13 6.30 -2.38 -0.02 1.12 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 2.99 8.03 -2.39 -0.02 2.97 16 37 H 0.07 2.67 5.82 -2.39 -0.01 2.65 16 38 H 0.05 2.13 5.90 -2.38 -0.01 2.12 16 39 H 0.04 2.08 5.27 -2.39 -0.01 2.07 16 40 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 41 H 0.19 5.37 8.06 -2.91 -0.02 5.35 16 42 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -73.81 351.59 6.77 -67.05 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.93 Total: 17.01 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 5.12 Total: -7.77 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -1.92 Total: -100.45 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.74 Total: -21.37 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.53 kcal Total: -73.81 6.77 -67.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104543450.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.122 kcal (2) G-P(sol) polarization free energy of solvation -73.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds