Wall clock time and date at job start Tue Mar 31 2020 07:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46617 * 2 1 4 4 C 1.53004 * 109.46647 * 174.48980 * 3 2 1 5 5 C 1.52997 * 109.46944 * 197.40383 * 4 3 2 6 6 C 1.52996 * 109.47141 * 294.48568 * 3 2 1 7 7 N 1.46498 * 109.46813 * 173.29446 * 6 3 2 8 8 C 1.46497 * 120.00534 * 284.86246 * 7 6 3 9 9 C 1.50700 * 109.47031 * 274.23118 * 8 7 6 10 10 H 1.08001 * 120.00394 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99979 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00030 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00221 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47067 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47597 * 119.99689 * 13 11 9 16 16 H 1.48502 * 109.47043 * 240.00138 * 13 11 9 17 17 C 1.34779 * 119.99669 * 104.59223 * 7 6 3 18 18 O 1.21583 * 120.00246 * 174.71858 * 17 7 6 19 19 C 1.47512 * 119.99881 * 354.71455 * 17 7 6 20 20 C 1.36827 * 126.94312 * 177.69992 * 19 17 7 21 21 C 1.41264 * 103.84690 * 179.90757 * 20 19 17 22 22 C 1.50697 * 126.70377 * 180.12737 * 21 20 19 23 23 N 1.30126 * 106.58784 * 0.36037 * 21 20 19 24 24 O 1.20885 * 111.98709 * 359.76377 * 23 21 20 25 25 H 1.09001 * 109.46726 * 185.95159 * 1 2 3 26 26 H 1.09005 * 109.47007 * 305.94847 * 1 2 3 27 27 H 1.08993 * 109.47580 * 65.94851 * 1 2 3 28 28 H 1.08998 * 109.47086 * 240.00285 * 2 1 3 29 29 H 1.08997 * 109.47242 * 119.99491 * 2 1 3 30 30 H 1.08996 * 109.47345 * 54.49130 * 3 2 1 31 31 H 1.09001 * 109.47495 * 317.40184 * 4 3 2 32 32 H 1.08999 * 109.47222 * 77.40247 * 4 3 2 33 33 H 1.08997 * 109.47567 * 173.95124 * 5 4 3 34 34 H 1.09006 * 109.47006 * 293.94967 * 5 4 3 35 35 H 1.08997 * 109.47291 * 53.94580 * 5 4 3 36 36 H 1.09009 * 109.46888 * 53.29844 * 6 3 2 37 37 H 1.09001 * 109.47523 * 293.30077 * 6 3 2 38 38 H 1.09000 * 109.46778 * 34.22814 * 8 7 6 39 39 H 1.09000 * 109.47501 * 154.22867 * 8 7 6 40 40 H 0.97000 * 120.00190 * 179.97438 * 12 11 9 41 41 H 1.08000 * 128.07281 * 0.02562 * 20 19 17 42 42 H 1.08995 * 109.47292 * 270.25351 * 22 21 20 43 43 H 1.08998 * 109.47244 * 30.25781 * 22 21 20 44 44 H 1.09004 * 109.47287 * 150.25324 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5637 1.4448 0.1385 5 6 4.0345 2.8351 0.5701 6 6 1.6462 2.1227 -1.3127 7 7 1.9919 3.5448 -1.2487 8 6 1.1721 4.4630 -0.4542 9 6 0.0120 4.9476 -1.2850 10 1 -0.1030 4.6062 -2.3032 11 6 -0.9028 5.8268 -0.7453 12 7 -0.7631 6.2422 0.4947 13 14 -2.3404 6.4282 -1.7753 14 1 -2.2706 5.8172 -3.1271 15 1 -3.6153 6.0389 -1.1210 16 1 -2.2778 7.9068 -1.8971 17 6 3.0673 4.0076 -1.9164 18 8 3.2996 5.2008 -1.9424 19 6 3.9626 3.0665 -2.6155 20 6 5.0613 3.3815 -3.3676 21 6 5.5473 2.1269 -3.7980 22 6 6.7555 1.8777 -4.6636 23 7 4.7450 1.2287 -3.3052 24 8 3.8603 1.7243 -2.6472 25 1 -0.3633 -1.0222 0.1066 26 1 -0.3633 0.6033 0.8320 27 1 -0.3634 0.4188 -0.9384 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.5983 1.9841 0.8365 31 1 3.8615 0.7115 0.8880 32 1 4.0160 1.1892 -0.8197 33 1 5.1051 2.8096 0.7727 34 1 3.8325 3.5508 -0.2270 35 1 3.5011 3.1357 1.4719 36 1 0.5727 2.0164 -1.4693 37 1 2.1819 1.6553 -2.1390 38 1 0.7959 3.9439 0.4274 39 1 1.7774 5.3146 -0.1436 40 1 -1.4064 6.8610 0.8743 41 1 5.4641 4.3607 -3.5807 42 1 6.4584 1.8819 -5.7122 43 1 7.4934 2.6615 -4.4918 44 1 7.1889 0.9096 -4.4126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104544282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:01 Heat of formation + Delta-G solvation = 26.371649 kcal Electronic energy + Delta-G solvation = -25509.343142 eV Core-core repulsion = 22044.593352 eV Total energy + Delta-G solvation = -3464.749790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.89996 -39.58877 -37.12868 -34.84449 -34.15363 -32.68177 -31.81982 -31.60813 -28.82138 -28.04552 -27.26245 -24.54021 -24.09074 -22.76971 -21.87265 -21.60109 -19.83491 -19.35603 -17.86268 -17.17574 -16.51029 -16.02131 -15.72006 -15.08783 -14.46293 -14.22104 -13.96262 -13.79800 -13.51128 -13.39872 -13.21894 -13.06409 -12.92430 -12.55550 -12.46883 -12.25705 -11.98036 -11.39393 -11.35716 -11.26433 -11.21359 -10.91489 -10.70431 -10.58249 -10.46942 -10.33629 -10.13881 -10.08343 -9.90202 -9.62064 -9.47867 -9.46045 -8.47828 -7.73240 -6.08934 -4.13838 1.08612 2.14807 2.92374 3.27979 3.35784 3.39333 3.53573 3.73204 4.11222 4.40855 4.55490 4.98593 4.99965 5.07258 5.16410 5.25926 5.30426 5.33056 5.38700 5.49423 5.55582 5.67012 5.68306 5.73954 5.78110 5.86984 6.04367 6.06109 6.13994 6.18653 6.27263 6.32492 6.33857 6.43567 6.58663 6.63648 6.77034 6.95891 7.30301 7.39082 7.85744 8.09274 8.15859 8.26860 8.65461 8.91556 9.51237 10.99086 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.005788 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.240153 B = 4836.642156 C = 5845.635244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.104 4.104 4 C -0.124 4.124 5 C -0.163 4.163 6 C 0.103 3.897 7 N -0.574 5.574 8 C 0.247 3.753 9 C -0.529 4.529 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.590 3.410 18 O -0.515 6.515 19 C -0.060 4.060 20 C -0.172 4.172 21 C 0.010 3.990 22 C -0.073 4.073 23 N -0.363 5.363 24 O 0.117 5.883 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.039 0.961 39 H 0.047 0.953 40 H 0.263 0.737 41 H 0.179 0.821 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.261 -11.916 -4.167 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.123 4.123 4 C -0.161 4.161 5 C -0.220 4.220 6 C -0.021 4.021 7 N -0.304 5.304 8 C 0.129 3.871 9 C -0.567 4.567 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.209 1.209 17 C 0.374 3.626 18 O -0.392 6.392 19 C -0.126 4.126 20 C -0.195 4.195 21 C -0.148 4.148 22 C -0.131 4.131 23 N -0.069 5.069 24 O 0.050 5.950 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.197 0.803 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.208 -12.458 -4.091 16.618 hybrid contribution -0.676 1.169 -0.526 1.449 sum 9.533 -11.289 -4.617 15.480 Atomic orbital electron populations 1.21843 0.95738 1.01016 1.02685 1.21493 0.95977 0.95911 1.01706 1.21632 0.95612 0.95914 0.99191 1.21765 0.95460 0.97280 1.01591 1.22156 0.99782 0.97616 1.02491 1.22039 1.02127 0.80686 0.97272 1.48267 1.25787 1.09457 1.46880 1.19400 0.89392 0.88212 0.90078 1.21432 1.08678 1.27263 0.99365 0.92227 1.24907 0.98086 0.95845 0.95043 1.69934 1.36625 1.33050 1.13515 0.86450 0.81941 0.78730 0.80367 1.19767 1.20927 1.20864 1.16547 0.80682 0.85861 0.79519 1.90865 1.73131 1.13695 1.61502 1.24882 1.00329 0.84097 1.03295 1.22806 0.96318 1.00269 1.00072 1.23536 0.99894 0.89342 1.02034 1.20156 0.91976 1.03359 0.97558 1.73651 1.00427 1.23803 1.09059 1.85227 1.38938 1.18917 1.51929 0.93303 0.92342 0.92215 0.92009 0.92163 0.90020 0.92499 0.91493 0.93892 0.91606 0.92394 0.89502 0.89944 0.94299 0.93464 0.92698 0.80347 0.90166 0.89945 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.54 37.16 0.35 -1.57 16 2 C -0.11 -1.39 5.36 -26.73 -0.14 -1.54 16 3 C -0.10 -1.55 2.04 -90.62 -0.18 -1.73 16 4 C -0.12 -1.79 4.99 -26.73 -0.13 -1.92 16 5 C -0.16 -2.64 9.14 37.16 0.34 -2.30 16 6 C 0.10 1.74 4.76 -4.04 -0.02 1.72 16 7 N -0.57 -11.87 1.39 -176.30 -0.24 -12.11 16 8 C 0.25 6.16 5.12 -5.20 -0.03 6.14 16 9 C -0.53 -14.47 9.39 -34.44 -0.32 -14.79 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 13 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.59 12.24 4.75 -12.48 -0.06 12.18 16 18 O -0.51 -12.47 16.48 5.29 0.09 -12.38 16 19 C -0.06 -1.03 5.82 -36.31 -0.21 -1.24 16 20 C -0.17 -2.54 10.92 -38.94 -0.43 -2.96 16 21 C 0.01 0.13 7.31 -82.17 -0.60 -0.47 16 22 C -0.07 -0.64 10.47 36.00 0.38 -0.26 16 23 N -0.36 -5.43 12.04 33.52 0.40 -5.03 16 24 O 0.12 1.85 4.91 15.54 0.08 1.92 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.77 6.73 -51.93 -0.35 0.42 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 30 H 0.08 1.35 7.05 -51.93 -0.37 0.98 16 31 H 0.06 0.74 7.95 -51.93 -0.41 0.32 16 32 H 0.07 0.99 4.74 -51.93 -0.25 0.75 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.22 3.08 -51.93 -0.16 1.06 16 35 H 0.06 0.95 8.03 -51.93 -0.42 0.54 16 36 H 0.09 1.51 6.43 -51.92 -0.33 1.18 16 37 H 0.08 1.32 4.39 -52.58 -0.23 1.09 16 38 H 0.04 0.98 7.23 -51.93 -0.38 0.60 16 39 H 0.05 1.32 7.37 -51.93 -0.38 0.94 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.18 2.33 8.06 -52.49 -0.42 1.91 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -30.56 346.23 -6.52 -37.07 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.62 Total: 0.97 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.15 Total: -7.07 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.90 Total: -42.13 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.16 Total: -10.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.56 -6.52 -37.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104544282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.443 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds