Wall clock time and date at job start Tue Mar 31 2020 07:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46617 * 2 1 4 4 C 1.53004 * 109.46647 * 174.48980 * 3 2 1 5 5 C 1.52997 * 109.46944 * 197.40383 * 4 3 2 6 6 C 1.52996 * 109.47141 * 294.48568 * 3 2 1 7 7 N 1.46498 * 109.46813 * 173.29446 * 6 3 2 8 8 C 1.46497 * 120.00534 * 284.86246 * 7 6 3 9 9 C 1.50700 * 109.47031 * 274.23118 * 8 7 6 10 10 H 1.08001 * 120.00394 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99979 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00030 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00221 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47067 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47597 * 119.99689 * 13 11 9 16 16 H 1.48502 * 109.47043 * 240.00138 * 13 11 9 17 17 C 1.34779 * 119.99669 * 104.59223 * 7 6 3 18 18 O 1.21583 * 120.00246 * 174.71858 * 17 7 6 19 19 C 1.47512 * 119.99881 * 354.71455 * 17 7 6 20 20 C 1.36827 * 126.94312 * 177.69992 * 19 17 7 21 21 C 1.41264 * 103.84690 * 179.90757 * 20 19 17 22 22 C 1.50697 * 126.70377 * 180.12737 * 21 20 19 23 23 N 1.30126 * 106.58784 * 0.36037 * 21 20 19 24 24 O 1.20885 * 111.98709 * 359.76377 * 23 21 20 25 25 H 1.09001 * 109.46726 * 185.95159 * 1 2 3 26 26 H 1.09005 * 109.47007 * 305.94847 * 1 2 3 27 27 H 1.08993 * 109.47580 * 65.94851 * 1 2 3 28 28 H 1.08998 * 109.47086 * 240.00285 * 2 1 3 29 29 H 1.08997 * 109.47242 * 119.99491 * 2 1 3 30 30 H 1.08996 * 109.47345 * 54.49130 * 3 2 1 31 31 H 1.09001 * 109.47495 * 317.40184 * 4 3 2 32 32 H 1.08999 * 109.47222 * 77.40247 * 4 3 2 33 33 H 1.08997 * 109.47567 * 173.95124 * 5 4 3 34 34 H 1.09006 * 109.47006 * 293.94967 * 5 4 3 35 35 H 1.08997 * 109.47291 * 53.94580 * 5 4 3 36 36 H 1.09009 * 109.46888 * 53.29844 * 6 3 2 37 37 H 1.09001 * 109.47523 * 293.30077 * 6 3 2 38 38 H 1.09000 * 109.46778 * 34.22814 * 8 7 6 39 39 H 1.09000 * 109.47501 * 154.22867 * 8 7 6 40 40 H 0.97000 * 120.00190 * 179.97438 * 12 11 9 41 41 H 1.08000 * 128.07281 * 0.02562 * 20 19 17 42 42 H 1.08995 * 109.47292 * 270.25351 * 22 21 20 43 43 H 1.08998 * 109.47244 * 30.25781 * 22 21 20 44 44 H 1.09004 * 109.47287 * 150.25324 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5637 1.4448 0.1385 5 6 4.0345 2.8351 0.5701 6 6 1.6462 2.1227 -1.3127 7 7 1.9919 3.5448 -1.2487 8 6 1.1721 4.4630 -0.4542 9 6 0.0120 4.9476 -1.2850 10 1 -0.1030 4.6062 -2.3032 11 6 -0.9028 5.8268 -0.7453 12 7 -0.7631 6.2422 0.4947 13 14 -2.3404 6.4282 -1.7753 14 1 -2.2706 5.8172 -3.1271 15 1 -3.6153 6.0389 -1.1210 16 1 -2.2778 7.9068 -1.8971 17 6 3.0673 4.0076 -1.9164 18 8 3.2996 5.2008 -1.9424 19 6 3.9626 3.0665 -2.6155 20 6 5.0613 3.3815 -3.3676 21 6 5.5473 2.1269 -3.7980 22 6 6.7555 1.8777 -4.6636 23 7 4.7450 1.2287 -3.3052 24 8 3.8603 1.7243 -2.6472 25 1 -0.3633 -1.0222 0.1066 26 1 -0.3633 0.6033 0.8320 27 1 -0.3634 0.4188 -0.9384 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.5983 1.9841 0.8365 31 1 3.8615 0.7115 0.8880 32 1 4.0160 1.1892 -0.8197 33 1 5.1051 2.8096 0.7727 34 1 3.8325 3.5508 -0.2270 35 1 3.5011 3.1357 1.4719 36 1 0.5727 2.0164 -1.4693 37 1 2.1819 1.6553 -2.1390 38 1 0.7959 3.9439 0.4274 39 1 1.7774 5.3146 -0.1436 40 1 -1.4064 6.8610 0.8743 41 1 5.4641 4.3607 -3.5807 42 1 6.4584 1.8819 -5.7122 43 1 7.4934 2.6615 -4.4918 44 1 7.1889 0.9096 -4.4126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104544282.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:00 Heat of formation + Delta-G solvation = 9.571498 kcal Electronic energy + Delta-G solvation = -25510.071651 eV Core-core repulsion = 22044.593352 eV Total energy + Delta-G solvation = -3465.478299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.07037 -41.18487 -38.54938 -36.00231 -35.77796 -34.54756 -33.19416 -32.80885 -29.97019 -29.48555 -28.78197 -25.94384 -25.78972 -24.05913 -23.30619 -22.80916 -21.09297 -20.72158 -19.11530 -18.68621 -18.43379 -17.46283 -17.28186 -16.70411 -16.18164 -15.61978 -15.28972 -14.96859 -14.72378 -14.43935 -14.37320 -14.27537 -14.15511 -14.01595 -13.64755 -13.58290 -13.36969 -13.17386 -12.98704 -12.65498 -12.50693 -12.40139 -12.33994 -12.23654 -11.93850 -11.72603 -11.48447 -11.40520 -11.35266 -11.11369 -10.99516 -10.75884 -10.63611 -9.45168 -8.22361 -6.36528 -0.24514 1.05071 1.37741 1.39607 1.50087 1.55092 1.97194 2.22023 2.41484 3.07887 3.10290 3.32305 3.74650 3.82980 3.87978 4.00763 4.11397 4.32393 4.38371 4.43189 4.52592 4.58659 4.63189 4.73520 4.76906 4.77718 4.85914 4.90459 4.99418 5.07056 5.09015 5.15832 5.19453 5.22018 5.23745 5.26088 5.37792 5.49473 5.51171 5.60215 5.75305 6.03532 6.46145 6.70015 6.94122 7.11459 7.34245 8.84952 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014324 B = 0.005788 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.240153 B = 4836.642156 C = 5845.635244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.099 4.099 4 C -0.116 4.116 5 C -0.162 4.162 6 C 0.101 3.899 7 N -0.577 5.577 8 C 0.269 3.731 9 C -0.545 4.545 10 H 0.053 0.947 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.964 3.036 14 H -0.268 1.268 15 H -0.270 1.270 16 H -0.281 1.281 17 C 0.591 3.409 18 O -0.563 6.563 19 C -0.082 4.082 20 C -0.160 4.160 21 C 0.025 3.975 22 C -0.074 4.074 23 N -0.369 5.369 24 O 0.110 5.890 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.045 0.955 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.007 0.993 40 H 0.268 0.732 41 H 0.193 0.807 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.216 -13.937 -5.696 18.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C -0.118 4.118 4 C -0.153 4.153 5 C -0.220 4.220 6 C -0.021 4.021 7 N -0.306 5.306 8 C 0.148 3.852 9 C -0.583 4.583 10 H 0.071 0.929 11 C -0.185 4.185 12 N -0.564 5.564 13 Si 0.789 3.211 14 H -0.193 1.193 15 H -0.195 1.195 16 H -0.207 1.207 17 C 0.378 3.622 18 O -0.444 6.444 19 C -0.147 4.147 20 C -0.182 4.182 21 C -0.134 4.134 22 C -0.131 4.131 23 N -0.077 5.077 24 O 0.045 5.955 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.047 0.953 39 H 0.025 0.975 40 H 0.076 0.924 41 H 0.211 0.789 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.155 -14.523 -5.616 19.155 hybrid contribution -0.865 1.773 -0.077 1.974 sum 10.290 -12.750 -5.693 17.346 Atomic orbital electron populations 1.21840 0.95905 1.02007 1.01541 1.21461 0.95766 0.93887 1.03187 1.21576 0.96112 0.97282 0.96876 1.21720 0.94778 0.96502 1.02297 1.22130 1.00627 0.98242 1.00986 1.22243 1.01909 0.78729 0.99218 1.48155 1.25602 1.10403 1.46411 1.18804 0.88581 0.87625 0.90150 1.21685 1.09618 1.27733 0.99277 0.92856 1.25759 1.00766 0.95840 0.96173 1.70043 1.37726 1.33563 1.15025 0.85419 0.78855 0.77986 0.78873 1.19278 1.19530 1.20669 1.16846 0.80588 0.85938 0.78833 1.90818 1.74342 1.15902 1.63288 1.24182 1.00953 0.84590 1.04998 1.23171 0.94992 1.01728 0.98324 1.24177 1.00251 0.87918 1.01034 1.20414 0.90409 1.04828 0.97466 1.73649 1.00689 1.24018 1.09385 1.85190 1.39698 1.17899 1.52720 0.91095 0.93832 0.93176 0.90698 0.90362 0.92306 0.90184 0.91263 0.92476 0.94158 0.93619 0.90294 0.88462 0.95257 0.97479 0.92351 0.78939 0.88428 0.87759 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.54 71.98 0.69 -3.01 16 2 C -0.11 -2.41 5.36 30.60 0.16 -2.25 16 3 C -0.10 -2.94 2.04 -10.79 -0.02 -2.96 16 4 C -0.12 -3.24 4.99 30.59 0.15 -3.09 16 5 C -0.16 -5.36 9.14 71.98 0.66 -4.70 16 6 C 0.10 3.51 4.76 86.38 0.41 3.92 16 7 N -0.58 -25.01 1.39 -829.96 -1.15 -26.16 16 8 C 0.27 14.23 5.12 85.63 0.44 14.67 16 9 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 10 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.80 5.46 84.66 0.46 1.27 16 12 N -0.92 -54.86 13.29 21.45 0.28 -54.58 16 13 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 14 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 17 C 0.59 25.53 4.75 86.69 0.41 25.94 16 18 O -0.56 -28.74 16.48 -3.98 -0.07 -28.81 16 19 C -0.08 -2.79 5.82 24.39 0.14 -2.65 16 20 C -0.16 -4.46 10.92 22.68 0.25 -4.22 16 21 C 0.02 0.58 7.31 43.55 0.32 0.90 16 22 C -0.07 -0.99 10.47 71.23 0.75 -0.24 16 23 N -0.37 -10.16 12.04 -48.86 -0.59 -10.74 16 24 O 0.11 3.34 4.91 65.80 0.32 3.66 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.05 1.27 6.73 -2.39 -0.02 1.25 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.55 8.04 -2.39 -0.02 1.53 16 30 H 0.06 2.02 7.05 -2.39 -0.02 2.01 16 31 H 0.08 1.89 7.95 -2.39 -0.02 1.87 16 32 H 0.07 1.95 4.74 -2.39 -0.01 1.94 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.04 1.55 3.08 -2.38 -0.01 1.55 16 35 H 0.04 1.57 8.03 -2.39 -0.02 1.55 16 36 H 0.08 2.83 6.43 -2.38 -0.02 2.82 16 37 H 0.10 3.10 4.39 -12.73 -0.06 3.04 16 38 H 0.03 1.59 7.23 -2.39 -0.02 1.57 16 39 H 0.01 0.43 7.37 -2.39 -0.02 0.41 16 40 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 41 H 0.19 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -68.73 346.23 6.84 -61.89 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.95 Total: 15.37 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 5.06 Total: -7.13 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -1.46 Total: -91.49 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: 0.26 Total: -25.15 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.73 6.84 -61.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104544282.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.461 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds