Wall clock time and date at job start Tue Mar 31 2020 07:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47188 * 2 1 4 4 C 1.53005 * 109.46983 * 240.00035 * 2 1 3 5 5 N 1.46897 * 109.46722 * 120.00425 * 2 1 3 6 6 C 1.46891 * 111.00551 * 59.99782 * 5 2 1 7 7 C 1.50702 * 109.47528 * 179.97438 * 6 5 2 8 8 O 1.21287 * 119.99578 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00755 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00646 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47443 * 270.00265 * 10 9 7 12 12 H 1.08001 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00480 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99528 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00487 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46798 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47215 * 119.99681 * 15 13 11 18 18 H 1.48494 * 109.47431 * 240.00047 * 15 13 11 19 19 C 1.46505 * 119.99455 * 0.02562 * 9 7 6 20 20 C 1.50703 * 109.47064 * 90.00114 * 19 9 7 21 21 C 1.34515 * 125.79060 * 89.99944 * 20 19 9 22 22 C 1.41380 * 106.83832 * 179.97438 * 21 20 19 23 23 C 1.34506 * 106.84493 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.78568 * 269.69282 * 20 19 9 25 25 H 1.09000 * 109.47305 * 300.00250 * 1 2 3 26 26 H 1.09003 * 109.46707 * 60.00245 * 1 2 3 27 27 H 1.08999 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47526 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47471 * 299.99843 * 3 2 1 30 30 H 1.08998 * 109.47191 * 60.00229 * 3 2 1 31 31 H 1.09002 * 109.46850 * 299.99876 * 4 2 1 32 32 H 1.08993 * 109.47145 * 60.00005 * 4 2 1 33 33 H 1.08999 * 109.46809 * 180.02562 * 4 2 1 34 34 H 1.00909 * 110.99650 * 183.95778 * 5 2 1 35 35 H 1.09004 * 109.47465 * 60.00124 * 6 5 2 36 36 H 1.09002 * 109.47247 * 299.99803 * 6 5 2 37 37 H 1.09006 * 109.46911 * 30.00087 * 10 9 7 38 38 H 1.08996 * 109.47170 * 149.99599 * 10 9 7 39 39 H 0.97003 * 119.99687 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47068 * 210.00083 * 19 9 7 41 41 H 1.09001 * 109.47372 * 330.00170 * 19 9 7 42 42 H 1.07996 * 126.58016 * 0.03378 * 21 20 19 43 43 H 1.08006 * 126.57610 * 179.97438 * 22 21 20 44 44 H 1.08005 * 125.79499 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0196 -0.6926 1.1994 6 6 1.5486 -2.0835 1.2333 7 6 2.0701 -2.7604 2.4747 8 8 2.7654 -2.1445 3.2546 9 7 1.7632 -4.0498 2.7188 10 6 2.2706 -4.7080 3.9251 11 6 3.6038 -5.3443 3.6273 12 1 4.0303 -5.2666 2.6381 13 6 4.2792 -6.0257 4.6175 14 7 3.7601 -6.1199 5.8222 15 14 5.9314 -6.8150 4.2481 16 1 6.2926 -6.5663 2.8293 17 1 6.9695 -6.2277 5.1329 18 1 5.8460 -8.2779 4.4885 19 6 0.9229 -4.7936 1.7770 20 6 1.7946 -5.4593 0.7435 21 6 2.3240 -6.6924 0.8371 22 6 3.0657 -6.9106 -0.3466 23 6 2.9448 -5.7981 -1.0930 24 8 2.1699 -4.9242 -0.4298 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.0262 -0.6501 1.2559 35 1 1.9120 -2.6119 0.3519 36 1 0.4587 -2.0980 1.2419 37 1 2.3894 -3.9703 4.7188 38 1 1.5652 -5.4750 4.2446 39 1 4.2354 -6.5989 6.5190 40 1 0.3556 -5.5519 2.3168 41 1 0.2344 -4.1073 1.2839 42 1 2.2045 -7.3834 1.6583 43 1 3.6225 -7.7999 -0.6024 44 1 3.3917 -5.6365 -2.0628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112375807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:33 Heat of formation + Delta-G solvation = -16.373261 kcal Electronic energy + Delta-G solvation = -24941.536598 eV Core-core repulsion = 21474.933250 eV Total energy + Delta-G solvation = -3466.603348 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.13532 -39.29727 -37.72491 -35.14724 -32.75724 -32.54126 -31.67033 -30.00501 -27.96400 -27.42744 -27.33513 -25.74811 -24.94114 -22.42165 -21.31730 -20.33420 -19.19976 -18.56889 -17.19611 -16.78283 -16.36527 -15.68471 -15.43027 -15.15139 -14.84327 -14.59570 -14.25855 -14.04365 -13.74631 -13.31245 -12.92866 -12.57453 -12.45255 -12.34670 -12.26307 -12.17284 -12.13500 -11.83740 -11.71515 -11.46884 -11.31610 -11.21475 -11.04748 -10.88097 -10.70987 -10.59760 -10.19275 -9.65721 -9.40920 -8.91771 -8.42101 -8.20688 -8.12361 -7.72505 -6.02096 -4.04514 2.08208 3.04055 3.27016 3.30092 3.38316 3.42872 3.54684 3.81468 4.37906 4.49116 4.79638 4.88639 5.04217 5.12177 5.16524 5.25063 5.33846 5.44713 5.48062 5.51365 5.53824 5.64544 5.70140 5.73913 5.79400 5.80587 5.85492 5.86501 6.04228 6.20955 6.21534 6.30244 6.42884 6.47820 6.91505 6.95450 7.17807 7.42456 7.49064 7.54454 7.58086 7.95365 8.25723 8.34457 8.94323 9.09999 9.59935 11.06415 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.005412 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.443466 B = 5172.911958 C = 6112.849323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.184 4.184 5 N -0.661 5.661 6 C 0.032 3.968 7 C 0.508 3.492 8 O -0.521 6.521 9 N -0.597 5.597 10 C 0.245 3.755 11 C -0.514 4.514 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.196 3.804 20 C -0.029 4.029 21 C -0.170 4.170 22 C -0.212 4.212 23 C -0.056 4.056 24 O -0.181 6.181 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.350 0.650 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.261 0.739 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.150 0.850 43 H 0.141 0.859 44 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 5.511 -15.778 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 C -0.195 4.195 4 C -0.243 4.243 5 N -0.294 5.294 6 C -0.100 4.100 7 C 0.295 3.705 8 O -0.397 6.397 9 N -0.330 5.330 10 C 0.126 3.874 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.071 3.929 20 C -0.079 4.079 21 C -0.190 4.190 22 C -0.231 4.231 23 C -0.124 4.124 24 O -0.078 6.078 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.168 0.832 43 H 0.159 0.841 44 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.762 6.306 -14.816 17.876 hybrid contribution 1.872 -1.419 -0.929 2.526 sum -5.891 4.887 -15.746 17.507 Atomic orbital electron populations 1.21890 0.94023 1.01928 1.01905 1.20968 0.95524 0.94249 0.88000 1.21796 1.00992 0.94729 1.01968 1.22591 1.01358 1.01442 0.98879 1.60355 1.17476 1.13248 1.38319 1.22019 1.01388 0.89849 0.96722 1.20316 0.81064 0.81940 0.87207 1.90678 1.37089 1.63948 1.47947 1.48339 1.50497 1.10119 1.24060 1.19355 0.94193 0.92678 0.81137 1.21433 1.04004 1.32754 0.97097 0.92357 1.24888 0.97738 0.96509 0.94872 1.69940 1.38763 1.42744 1.02121 0.86526 0.84258 0.78791 0.78415 1.19867 1.21003 1.21045 1.19808 0.89739 0.96302 0.87007 1.23012 1.04113 0.94233 0.86589 1.21612 1.00686 0.97660 0.99041 1.21814 1.04989 1.00170 0.96149 1.23811 0.99523 0.89735 0.99298 1.83942 1.53724 1.42394 1.27734 0.91711 0.92516 0.92642 0.92739 0.92371 0.91659 0.92029 0.92286 0.92699 0.83021 0.91859 0.88756 0.93594 0.94947 0.92892 0.87412 0.90246 0.83200 0.84089 0.78935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.24 37.16 0.31 -1.14 16 2 C 0.10 1.20 0.97 -131.60 -0.13 1.07 16 3 C -0.14 -1.41 8.73 37.15 0.32 -1.09 16 4 C -0.18 -1.97 8.23 37.16 0.31 -1.66 16 5 N -0.66 -9.95 5.71 -101.22 -0.58 -10.53 16 6 C 0.03 0.51 3.93 -4.98 -0.02 0.49 16 7 C 0.51 10.66 7.71 -10.99 -0.08 10.57 16 8 O -0.52 -13.26 15.78 5.55 0.09 -13.17 16 9 N -0.60 -12.38 2.44 -176.43 -0.43 -12.81 16 10 C 0.25 6.24 5.20 -5.20 -0.03 6.22 16 11 C -0.51 -14.26 9.13 -34.44 -0.31 -14.57 16 12 H 0.06 1.67 7.64 -52.49 -0.40 1.27 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 15 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.20 3.14 5.78 -5.19 -0.03 3.11 16 20 C -0.03 -0.48 6.85 -35.62 -0.24 -0.73 16 21 C -0.17 -2.99 10.39 -39.70 -0.41 -3.40 16 22 C -0.21 -3.29 10.91 -39.71 -0.43 -3.73 16 23 C -0.06 -0.79 12.09 29.41 0.36 -0.44 16 24 O -0.18 -2.89 9.56 5.68 0.05 -2.83 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.57 6.40 -51.93 -0.33 0.24 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.35 5.69 8.42 -39.29 -0.33 5.36 16 35 H 0.06 0.97 5.09 -51.93 -0.26 0.71 16 36 H 0.09 1.30 5.56 -51.93 -0.29 1.01 16 37 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 38 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.11 1.56 7.89 -51.93 -0.41 1.15 16 41 H 0.08 1.01 6.44 -51.93 -0.33 0.68 16 42 H 0.15 2.71 8.06 -52.49 -0.42 2.29 16 43 H 0.14 1.89 8.06 -52.48 -0.42 1.47 16 44 H 0.19 1.93 8.06 -52.48 -0.42 1.50 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -33.09 359.91 -7.08 -40.17 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.85 Total: 6.02 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -0.50 Total: -3.66 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.27 Total: -49.01 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.14 Total: -16.01 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.09 -7.08 -40.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112375807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.795 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds