Wall clock time and date at job start Tue Mar 31 2020 07:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47188 * 2 1 4 4 C 1.53005 * 109.46983 * 240.00035 * 2 1 3 5 5 N 1.46897 * 109.46722 * 120.00425 * 2 1 3 6 6 C 1.46891 * 111.00551 * 59.99782 * 5 2 1 7 7 C 1.50702 * 109.47528 * 179.97438 * 6 5 2 8 8 O 1.21287 * 119.99578 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00755 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00646 * 179.97438 * 9 7 6 11 11 C 1.50695 * 109.47443 * 270.00265 * 10 9 7 12 12 H 1.08001 * 120.00056 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00480 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99528 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00487 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46798 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47215 * 119.99681 * 15 13 11 18 18 H 1.48494 * 109.47431 * 240.00047 * 15 13 11 19 19 C 1.46505 * 119.99455 * 0.02562 * 9 7 6 20 20 C 1.50703 * 109.47064 * 90.00114 * 19 9 7 21 21 C 1.34515 * 125.79060 * 89.99944 * 20 19 9 22 22 C 1.41380 * 106.83832 * 179.97438 * 21 20 19 23 23 C 1.34506 * 106.84493 * 359.97438 * 22 21 20 24 24 O 1.34306 * 125.78568 * 269.69282 * 20 19 9 25 25 H 1.09000 * 109.47305 * 300.00250 * 1 2 3 26 26 H 1.09003 * 109.46707 * 60.00245 * 1 2 3 27 27 H 1.08999 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47526 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47471 * 299.99843 * 3 2 1 30 30 H 1.08998 * 109.47191 * 60.00229 * 3 2 1 31 31 H 1.09002 * 109.46850 * 299.99876 * 4 2 1 32 32 H 1.08993 * 109.47145 * 60.00005 * 4 2 1 33 33 H 1.08999 * 109.46809 * 180.02562 * 4 2 1 34 34 H 1.00909 * 110.99650 * 183.95778 * 5 2 1 35 35 H 1.09004 * 109.47465 * 60.00124 * 6 5 2 36 36 H 1.09002 * 109.47247 * 299.99803 * 6 5 2 37 37 H 1.09006 * 109.46911 * 30.00087 * 10 9 7 38 38 H 1.08996 * 109.47170 * 149.99599 * 10 9 7 39 39 H 0.97003 * 119.99687 * 180.02562 * 14 13 11 40 40 H 1.09002 * 109.47068 * 210.00083 * 19 9 7 41 41 H 1.09001 * 109.47372 * 330.00170 * 19 9 7 42 42 H 1.07996 * 126.58016 * 0.03378 * 21 20 19 43 43 H 1.08006 * 126.57610 * 179.97438 * 22 21 20 44 44 H 1.08005 * 125.79499 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0196 -0.6926 1.1994 6 6 1.5486 -2.0835 1.2333 7 6 2.0701 -2.7604 2.4747 8 8 2.7654 -2.1445 3.2546 9 7 1.7632 -4.0498 2.7188 10 6 2.2706 -4.7080 3.9251 11 6 3.6038 -5.3443 3.6273 12 1 4.0303 -5.2666 2.6381 13 6 4.2792 -6.0257 4.6175 14 7 3.7601 -6.1199 5.8222 15 14 5.9314 -6.8150 4.2481 16 1 6.2926 -6.5663 2.8293 17 1 6.9695 -6.2277 5.1329 18 1 5.8460 -8.2779 4.4885 19 6 0.9229 -4.7936 1.7770 20 6 1.7946 -5.4593 0.7435 21 6 2.3240 -6.6924 0.8371 22 6 3.0657 -6.9106 -0.3466 23 6 2.9448 -5.7981 -1.0930 24 8 2.1699 -4.9242 -0.4298 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 3.0262 -0.6501 1.2559 35 1 1.9120 -2.6119 0.3519 36 1 0.4587 -2.0980 1.2419 37 1 2.3894 -3.9703 4.7188 38 1 1.5652 -5.4750 4.2446 39 1 4.2354 -6.5989 6.5190 40 1 0.3556 -5.5519 2.3168 41 1 0.2344 -4.1073 1.2839 42 1 2.2045 -7.3834 1.6583 43 1 3.6225 -7.7999 -0.6024 44 1 3.3917 -5.6365 -2.0628 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112375807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:32 Heat of formation + Delta-G solvation = -38.378989 kcal Electronic energy + Delta-G solvation = -24942.490838 eV Core-core repulsion = 21474.933250 eV Total energy + Delta-G solvation = -3467.557588 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.35867 -40.81619 -38.86544 -36.84776 -34.82844 -33.78436 -32.89059 -31.44169 -29.67726 -28.37364 -28.14943 -27.08065 -26.50667 -24.29517 -22.55604 -21.62375 -20.18441 -20.06423 -18.77611 -18.39116 -17.91321 -17.29021 -16.67316 -16.55772 -16.40061 -15.95151 -15.54352 -15.24981 -14.94701 -14.60173 -14.17887 -14.11823 -13.97152 -13.68532 -13.65313 -13.50136 -13.27824 -12.96297 -12.89867 -12.73154 -12.71599 -12.61845 -12.50975 -12.35320 -12.24053 -11.92505 -11.70936 -11.57172 -10.71178 -10.61565 -10.60806 -9.66721 -9.33587 -9.25303 -8.20059 -6.29970 0.84162 1.32353 1.35109 1.46001 1.71178 1.84651 2.22055 2.30193 2.43894 3.10849 3.22136 3.71628 3.87013 3.92694 4.06930 4.09113 4.24040 4.28689 4.35801 4.39675 4.48123 4.55891 4.73039 4.78386 4.91681 4.92791 5.00637 5.02288 5.04551 5.04689 5.15105 5.22874 5.25677 5.30778 5.38421 5.47571 5.56295 5.69606 5.81760 6.06901 6.10362 6.30188 6.36147 6.68482 6.78470 7.31637 7.47141 8.87864 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.014839 B = 0.005412 C = 0.004579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.443466 B = 5172.911958 C = 6112.849323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.100 3.900 3 C -0.135 4.135 4 C -0.178 4.178 5 N -0.677 5.677 6 C 0.053 3.947 7 C 0.498 3.502 8 O -0.578 6.578 9 N -0.599 5.599 10 C 0.260 3.740 11 C -0.515 4.515 12 H 0.047 0.953 13 C 0.012 3.988 14 N -0.928 5.928 15 Si 0.954 3.046 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.192 3.808 20 C -0.041 4.041 21 C -0.193 4.193 22 C -0.234 4.234 23 C -0.040 4.040 24 O -0.183 6.183 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.339 0.661 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.000 1.000 38 H 0.030 0.970 39 H 0.265 0.735 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.134 0.866 43 H 0.158 0.842 44 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.952 5.671 -18.910 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 C -0.193 4.193 4 C -0.237 4.237 5 N -0.309 5.309 6 C -0.079 4.079 7 C 0.287 3.713 8 O -0.457 6.457 9 N -0.331 5.331 10 C 0.139 3.861 11 C -0.554 4.554 12 H 0.065 0.935 13 C -0.187 4.187 14 N -0.569 5.569 15 Si 0.780 3.220 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.195 1.195 19 C 0.069 3.931 20 C -0.092 4.092 21 C -0.214 4.214 22 C -0.253 4.253 23 C -0.107 4.107 24 O -0.079 6.079 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.018 0.982 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.176 0.824 44 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.176 6.451 -17.994 20.790 hybrid contribution 1.970 -1.453 0.000 2.448 sum -6.207 4.998 -17.993 19.679 Atomic orbital electron populations 1.21903 0.92820 1.02304 1.02633 1.21149 0.96415 0.94466 0.86974 1.21795 1.00727 0.94109 1.02643 1.22527 1.00843 1.01219 0.99132 1.60410 1.16809 1.12873 1.40846 1.21884 1.02408 0.89963 0.93632 1.21334 0.80071 0.81668 0.88185 1.90643 1.39684 1.65211 1.50155 1.48280 1.50690 1.10548 1.23562 1.18828 0.93754 0.91221 0.82268 1.21541 1.04852 1.32581 0.96444 0.93513 1.25668 1.01138 0.97155 0.94736 1.70042 1.40255 1.43607 1.02953 0.85566 0.79943 0.78536 0.78005 1.19744 1.21050 1.19503 1.20126 0.89437 0.97213 0.86348 1.22952 1.04785 0.94161 0.87327 1.21739 1.01801 0.98115 0.99705 1.22102 1.05683 1.01760 0.95784 1.24666 0.97464 0.88500 1.00070 1.83943 1.53963 1.42680 1.27338 0.92649 0.90197 0.92408 0.93230 0.90008 0.92636 0.92483 0.90134 0.93503 0.84259 0.90827 0.86234 0.98163 0.95233 0.92641 0.86310 0.86289 0.84791 0.82383 0.74543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.24 71.98 0.59 -1.87 16 2 C 0.10 2.09 0.97 3.53 0.00 2.09 16 3 C -0.14 -2.52 8.73 71.98 0.63 -1.89 16 4 C -0.18 -3.29 8.23 71.98 0.59 -2.70 16 5 N -0.68 -19.84 5.71 -474.17 -2.71 -22.55 16 6 C 0.05 1.59 3.93 85.56 0.34 1.92 16 7 C 0.50 21.17 7.71 87.66 0.68 21.84 16 8 O -0.58 -30.63 15.78 -3.05 -0.05 -30.68 16 9 N -0.60 -25.18 2.44 -830.50 -2.03 -27.21 16 10 C 0.26 13.81 5.20 85.63 0.45 14.26 16 11 C -0.52 -29.36 9.13 25.60 0.23 -29.12 16 12 H 0.05 2.73 7.64 -2.91 -0.02 2.71 16 13 C 0.01 0.67 5.46 84.65 0.46 1.13 16 14 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 15 Si 0.95 45.80 29.54 68.60 2.03 47.83 16 16 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.19 5.93 5.78 85.63 0.50 6.43 16 20 C -0.04 -1.36 6.85 24.83 0.17 -1.19 16 21 C -0.19 -6.72 10.39 22.19 0.23 -6.49 16 22 C -0.23 -6.85 10.91 22.19 0.24 -6.61 16 23 C -0.04 -1.00 12.09 66.97 0.81 -0.19 16 24 O -0.18 -5.34 9.56 -2.58 -0.02 -5.36 16 25 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 0.99 6.40 -2.39 -0.02 0.97 16 28 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.11 6.40 -2.39 -0.02 1.09 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.34 11.09 8.42 -89.69 -0.76 10.34 16 35 H 0.07 2.09 5.09 -2.38 -0.01 2.08 16 36 H 0.12 2.97 5.56 -2.39 -0.01 2.96 16 37 H 0.00 0.02 7.42 -2.38 -0.02 0.00 16 38 H 0.03 1.57 7.89 -2.39 -0.02 1.55 16 39 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 40 H 0.12 3.37 7.89 -2.39 -0.02 3.35 16 41 H 0.12 2.71 6.44 -2.39 -0.02 2.69 16 42 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 43 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 44 H 0.24 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -74.69 359.91 3.66 -71.03 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.24 Total: 25.05 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.92 Total: -2.39 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.45 Total: -105.48 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -0.07 Total: -36.04 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -74.69 3.66 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112375807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.649 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds