Wall clock time and date at job start Tue Mar 31 2020 06:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 110.66321 * 2 1 4 4 C 1.54229 * 110.60272 * 237.06397 * 2 1 3 5 5 C 1.51318 * 103.55720 * 241.25896 * 4 2 1 6 6 O 1.21228 * 125.39689 * 180.25188 * 5 4 2 7 7 N 1.33876 * 109.20232 * 0.39156 * 5 4 2 8 8 C 1.46504 * 122.76190 * 179.84029 * 7 5 4 9 9 N 1.46500 * 109.47285 * 269.71078 * 8 7 5 10 10 C 1.36933 * 119.99916 * 270.00338 * 9 8 7 11 11 H 1.08001 * 120.00758 * 141.58583 * 10 9 8 12 12 C 1.38815 * 119.99968 * 321.57848 * 10 9 8 13 13 N 1.31616 * 120.00195 * 157.25087 * 12 10 9 14 14 Si 1.86807 * 119.99940 * 337.25732 * 12 10 9 15 15 H 1.48492 * 109.47424 * 95.27711 * 14 12 10 16 16 H 1.48497 * 109.47066 * 215.28286 * 14 12 10 17 17 H 1.48507 * 109.46745 * 335.27576 * 14 12 10 18 18 C 1.46504 * 119.99910 * 89.99407 * 9 8 7 19 19 C 1.54971 * 110.91839 * 130.72604 * 18 9 8 20 20 C 1.54264 * 104.15774 * 156.29500 * 19 18 9 21 21 C 1.53877 * 106.64177 * 336.44790 * 20 19 18 22 22 C 1.54265 * 106.59736 * 359.97224 * 21 20 19 23 23 C 1.33876 * 114.47792 * 359.57285 * 7 5 4 24 24 O 1.21223 * 125.39633 * 180.29316 * 23 7 5 25 25 H 1.09002 * 109.47157 * 298.51927 * 1 2 3 26 26 H 1.08998 * 109.47392 * 58.52243 * 1 2 3 27 27 H 1.09001 * 109.47575 * 178.52477 * 1 2 3 28 28 H 1.09010 * 109.47098 * 181.48033 * 3 2 1 29 29 H 1.09001 * 109.47379 * 301.47611 * 3 2 1 30 30 H 1.08996 * 109.47321 * 61.47664 * 3 2 1 31 31 H 1.08998 * 110.61037 * 0.02562 * 4 2 1 32 32 H 1.09007 * 110.60366 * 122.96633 * 4 2 1 33 33 H 1.09002 * 109.47148 * 149.70992 * 8 7 5 34 34 H 1.09004 * 109.46590 * 29.70648 * 8 7 5 35 35 H 0.96999 * 119.99683 * 180.02562 * 13 12 10 36 36 H 1.08993 * 110.67298 * 7.42022 * 18 9 8 37 37 H 1.09002 * 110.47570 * 37.64352 * 19 18 9 38 38 H 1.09000 * 110.52859 * 274.97341 * 19 18 9 39 39 H 1.08995 * 110.03729 * 217.13388 * 20 19 18 40 40 H 1.09005 * 110.03262 * 95.75417 * 20 19 18 41 41 H 1.09001 * 110.03461 * 119.25967 * 21 20 19 42 42 H 1.08998 * 110.02752 * 240.64062 * 21 20 19 43 43 H 1.09001 * 110.48650 * 142.29448 * 22 21 20 44 44 H 1.08997 * 110.48544 * 264.79951 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4315 0.0000 4 6 2.0727 -0.7849 -1.2116 5 6 2.8596 -1.9126 -0.5801 6 8 3.4621 -2.7732 -1.1851 7 7 2.7824 -1.8110 0.7525 8 6 3.4371 -2.7576 1.6590 9 7 2.5193 -3.8588 1.9612 10 6 1.6730 -3.7699 3.0340 11 1 0.6664 -4.1546 2.9612 12 6 2.1088 -3.1855 4.2153 13 7 1.2349 -2.6923 5.0670 14 14 3.9356 -3.0989 4.5961 15 1 4.4683 -1.7803 4.1691 16 1 4.1453 -3.2683 6.0564 17 1 4.6452 -4.1797 3.8655 18 6 2.5069 -5.0550 1.1155 19 6 2.5866 -6.3416 1.9756 20 6 1.9664 -7.4336 1.0797 21 6 1.0488 -6.7122 0.0770 22 6 1.1423 -5.2063 0.3985 23 6 2.0625 -0.7700 1.1887 24 8 1.8683 -0.4886 2.3518 25 1 -0.3633 0.4907 0.9030 26 1 -0.3634 0.5366 -0.8764 27 1 -0.3634 -1.0273 -0.0265 28 1 3.1594 1.4089 -0.0266 29 1 1.6960 1.9609 -0.8764 30 1 1.7389 1.9446 0.9029 31 1 1.2527 -1.1750 -1.8146 32 1 2.7274 -0.1554 -1.8144 33 1 3.7088 -2.2472 2.5830 34 1 4.3352 -3.1530 1.1846 35 1 1.5395 -2.2836 5.8923 36 1 3.3218 -5.0235 0.3923 37 1 2.0069 -6.2247 2.8913 38 1 3.6240 -6.5825 2.2079 39 1 1.3845 -8.1279 1.6857 40 1 2.7517 -7.9706 0.5476 41 1 1.3892 -6.8983 -0.9416 42 1 0.0217 -7.0570 0.1960 43 1 1.1263 -4.6185 -0.5193 44 1 0.3276 -4.9056 1.0572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153416482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:16 Heat of formation + Delta-G solvation = -49.308309 kcal Electronic energy + Delta-G solvation = -26085.451071 eV Core-core repulsion = 22617.419552 eV Total energy + Delta-G solvation = -3468.031519 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.40741 -37.99339 -37.77744 -35.65783 -35.16073 -33.40629 -31.37819 -28.62794 -27.97737 -27.37380 -27.04183 -25.67743 -23.55084 -22.68802 -20.59377 -19.64597 -19.30846 -18.86638 -17.14700 -16.41412 -15.84707 -15.67245 -15.29122 -15.02420 -14.62543 -14.43933 -13.96593 -13.60994 -13.48211 -13.41886 -13.08440 -12.67314 -12.61979 -12.44188 -12.18818 -12.06600 -11.67476 -11.55241 -11.45322 -11.10508 -10.98478 -10.90845 -10.66573 -10.50509 -10.42402 -10.22981 -9.90862 -9.84007 -9.78900 -9.68137 -9.20484 -8.99863 -8.50472 -7.02356 -6.02796 -3.48718 2.14846 3.18594 3.27194 3.40095 3.43812 3.47722 4.32546 4.47976 4.58678 4.68565 4.79300 4.95560 5.22833 5.23967 5.33415 5.38459 5.53275 5.56416 5.57545 5.66670 5.77605 5.79768 5.87006 5.95795 6.06659 6.09485 6.11063 6.14273 6.20232 6.26784 6.30400 6.38225 6.42096 6.48074 6.56715 6.66136 6.96294 7.01957 7.17993 7.58256 7.97341 8.00275 8.35570 8.53704 8.88470 9.65250 9.99438 11.11656 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.008513 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.381087 B = 3288.242259 C = 4489.579027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.104 4.104 3 C -0.129 4.129 4 C -0.155 4.155 5 C 0.526 3.474 6 O -0.503 6.503 7 N -0.574 5.574 8 C 0.324 3.676 9 N -0.574 5.574 10 C -0.282 4.282 11 H 0.081 0.919 12 C 0.064 3.936 13 N -0.875 5.875 14 Si 0.856 3.144 15 H -0.283 1.283 16 H -0.295 1.295 17 H -0.265 1.265 18 C 0.167 3.833 19 C -0.130 4.130 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.132 4.132 23 C 0.525 3.475 24 O -0.444 6.444 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.264 0.736 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.991 3.029 -12.342 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.108 4.108 3 C -0.187 4.187 4 C -0.195 4.195 5 C 0.314 3.686 6 O -0.378 6.378 7 N -0.322 5.322 8 C 0.118 3.882 9 N -0.294 5.294 10 C -0.411 4.411 11 H 0.098 0.902 12 C -0.140 4.140 13 N -0.513 5.513 14 Si 0.686 3.314 15 H -0.211 1.211 16 H -0.223 1.223 17 H -0.190 1.190 18 C 0.060 3.940 19 C -0.168 4.168 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.171 4.171 23 C 0.311 3.689 24 O -0.312 6.312 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.185 2.726 -11.724 12.095 hybrid contribution 0.925 0.090 0.317 0.982 sum 2.110 2.816 -11.408 11.938 Atomic orbital electron populations 1.21680 0.90924 1.03037 1.02901 1.21520 0.98698 0.96989 0.93586 1.21709 1.00874 0.92931 1.03174 1.22699 1.01557 0.96850 0.98388 1.20765 0.79426 0.85488 0.82908 1.90684 1.42556 1.37387 1.67159 1.48723 1.47056 1.27393 1.08990 1.22104 0.90338 0.84034 0.91772 1.44652 1.43986 1.11017 1.29704 1.18498 0.93879 1.40354 0.88320 0.90166 1.25319 0.96374 0.96626 0.95690 1.69837 1.33758 1.36241 1.11458 0.87214 0.88855 0.77926 0.77454 1.21112 1.22290 1.18985 1.21548 0.95068 0.85969 0.91371 1.22658 0.99979 0.94233 0.99980 1.22053 0.98339 0.97959 0.97509 1.22032 0.99006 0.96409 0.98306 1.22699 1.00570 0.94255 0.99570 1.20587 0.77615 0.80591 0.90149 1.90836 1.53866 1.67854 1.18604 0.91079 0.91531 0.91839 0.92318 0.91274 0.91128 0.87008 0.87217 0.89520 0.90868 0.92560 0.91829 0.89575 0.93060 0.92602 0.92922 0.92868 0.92743 0.93442 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.45 37.16 0.31 -1.32 16 2 C -0.10 -1.44 1.05 -154.72 -0.16 -1.60 16 3 C -0.13 -1.44 8.45 37.15 0.31 -1.13 16 4 C -0.15 -1.93 6.32 -26.94 -0.17 -2.10 16 5 C 0.53 9.12 8.08 -11.08 -0.09 9.03 16 6 O -0.50 -9.76 17.47 5.60 0.10 -9.66 16 7 N -0.57 -11.41 2.79 -118.81 -0.33 -11.74 16 8 C 0.32 7.24 4.93 -63.75 -0.31 6.93 16 9 N -0.57 -13.39 2.36 -167.03 -0.39 -13.78 16 10 C -0.28 -7.57 8.12 -15.06 -0.12 -7.69 16 11 H 0.08 2.36 7.11 -52.49 -0.37 1.99 16 12 C 0.06 1.80 5.29 -17.43 -0.09 1.70 16 13 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 14 Si 0.86 21.77 25.12 -169.99 -4.27 17.50 16 15 H -0.28 -7.19 6.66 56.52 0.38 -6.81 16 16 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.17 3.41 3.43 -65.89 -0.23 3.19 16 19 C -0.13 -2.49 6.32 -25.03 -0.16 -2.65 16 20 C -0.12 -1.91 6.80 -25.61 -0.17 -2.09 16 21 C -0.12 -1.89 6.80 -25.61 -0.17 -2.07 16 22 C -0.13 -2.49 6.41 -25.07 -0.16 -2.65 16 23 C 0.53 10.35 6.74 -11.09 -0.07 10.27 16 24 O -0.44 -10.75 17.48 5.61 0.10 -10.66 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 1.21 7.74 -51.93 -0.40 0.81 16 32 H 0.11 1.07 7.74 -51.92 -0.40 0.67 16 33 H 0.09 2.14 3.10 -51.93 -0.16 1.97 16 34 H 0.07 1.53 7.58 -51.93 -0.39 1.14 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 1.30 7.84 -51.93 -0.41 0.89 16 37 H 0.09 1.87 6.98 -51.93 -0.36 1.50 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.52 6.86 -51.93 -0.36 1.17 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -31.82 348.22 -7.16 -38.98 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.09 Total: 1.84 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -1.29 Total: 7.83 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.05 Total: -51.08 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.20 Total: -20.32 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.27 Total: 17.50 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.82 -7.16 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153416482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.326 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds