Wall clock time and date at job start Tue Mar 31 2020 06:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 110.66321 * 2 1 4 4 C 1.54229 * 110.60272 * 237.06397 * 2 1 3 5 5 C 1.51318 * 103.55720 * 241.25896 * 4 2 1 6 6 O 1.21228 * 125.39689 * 180.25188 * 5 4 2 7 7 N 1.33876 * 109.20232 * 0.39156 * 5 4 2 8 8 C 1.46504 * 122.76190 * 179.84029 * 7 5 4 9 9 N 1.46500 * 109.47285 * 269.71078 * 8 7 5 10 10 C 1.36933 * 119.99916 * 270.00338 * 9 8 7 11 11 H 1.08001 * 120.00758 * 141.58583 * 10 9 8 12 12 C 1.38815 * 119.99968 * 321.57848 * 10 9 8 13 13 N 1.31616 * 120.00195 * 157.25087 * 12 10 9 14 14 Si 1.86807 * 119.99940 * 337.25732 * 12 10 9 15 15 H 1.48492 * 109.47424 * 95.27711 * 14 12 10 16 16 H 1.48497 * 109.47066 * 215.28286 * 14 12 10 17 17 H 1.48507 * 109.46745 * 335.27576 * 14 12 10 18 18 C 1.46504 * 119.99910 * 89.99407 * 9 8 7 19 19 C 1.54971 * 110.91839 * 130.72604 * 18 9 8 20 20 C 1.54264 * 104.15774 * 156.29500 * 19 18 9 21 21 C 1.53877 * 106.64177 * 336.44790 * 20 19 18 22 22 C 1.54265 * 106.59736 * 359.97224 * 21 20 19 23 23 C 1.33876 * 114.47792 * 359.57285 * 7 5 4 24 24 O 1.21223 * 125.39633 * 180.29316 * 23 7 5 25 25 H 1.09002 * 109.47157 * 298.51927 * 1 2 3 26 26 H 1.08998 * 109.47392 * 58.52243 * 1 2 3 27 27 H 1.09001 * 109.47575 * 178.52477 * 1 2 3 28 28 H 1.09010 * 109.47098 * 181.48033 * 3 2 1 29 29 H 1.09001 * 109.47379 * 301.47611 * 3 2 1 30 30 H 1.08996 * 109.47321 * 61.47664 * 3 2 1 31 31 H 1.08998 * 110.61037 * 0.02562 * 4 2 1 32 32 H 1.09007 * 110.60366 * 122.96633 * 4 2 1 33 33 H 1.09002 * 109.47148 * 149.70992 * 8 7 5 34 34 H 1.09004 * 109.46590 * 29.70648 * 8 7 5 35 35 H 0.96999 * 119.99683 * 180.02562 * 13 12 10 36 36 H 1.08993 * 110.67298 * 7.42022 * 18 9 8 37 37 H 1.09002 * 110.47570 * 37.64352 * 19 18 9 38 38 H 1.09000 * 110.52859 * 274.97341 * 19 18 9 39 39 H 1.08995 * 110.03729 * 217.13388 * 20 19 18 40 40 H 1.09005 * 110.03262 * 95.75417 * 20 19 18 41 41 H 1.09001 * 110.03461 * 119.25967 * 21 20 19 42 42 H 1.08998 * 110.02752 * 240.64062 * 21 20 19 43 43 H 1.09001 * 110.48650 * 142.29448 * 22 21 20 44 44 H 1.08997 * 110.48544 * 264.79951 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4315 0.0000 4 6 2.0727 -0.7849 -1.2116 5 6 2.8596 -1.9126 -0.5801 6 8 3.4621 -2.7732 -1.1851 7 7 2.7824 -1.8110 0.7525 8 6 3.4371 -2.7576 1.6590 9 7 2.5193 -3.8588 1.9612 10 6 1.6730 -3.7699 3.0340 11 1 0.6664 -4.1546 2.9612 12 6 2.1088 -3.1855 4.2153 13 7 1.2349 -2.6923 5.0670 14 14 3.9356 -3.0989 4.5961 15 1 4.4683 -1.7803 4.1691 16 1 4.1453 -3.2683 6.0564 17 1 4.6452 -4.1797 3.8655 18 6 2.5069 -5.0550 1.1155 19 6 2.5866 -6.3416 1.9756 20 6 1.9664 -7.4336 1.0797 21 6 1.0488 -6.7122 0.0770 22 6 1.1423 -5.2063 0.3985 23 6 2.0625 -0.7700 1.1887 24 8 1.8683 -0.4886 2.3518 25 1 -0.3633 0.4907 0.9030 26 1 -0.3634 0.5366 -0.8764 27 1 -0.3634 -1.0273 -0.0265 28 1 3.1594 1.4089 -0.0266 29 1 1.6960 1.9609 -0.8764 30 1 1.7389 1.9446 0.9029 31 1 1.2527 -1.1750 -1.8146 32 1 2.7274 -0.1554 -1.8144 33 1 3.7088 -2.2472 2.5830 34 1 4.3352 -3.1530 1.1846 35 1 1.5395 -2.2836 5.8923 36 1 3.3218 -5.0235 0.3923 37 1 2.0069 -6.2247 2.8913 38 1 3.6240 -6.5825 2.2079 39 1 1.3845 -8.1279 1.6857 40 1 2.7517 -7.9706 0.5476 41 1 1.3892 -6.8983 -0.9416 42 1 0.0217 -7.0570 0.1960 43 1 1.1263 -4.6185 -0.5193 44 1 0.3276 -4.9056 1.0572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153416482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:15 Heat of formation + Delta-G solvation = -69.754171 kcal Electronic energy + Delta-G solvation = -26086.337670 eV Core-core repulsion = 22617.419552 eV Total energy + Delta-G solvation = -3468.918118 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.85368 -39.54765 -39.35959 -37.03769 -36.79567 -35.06750 -33.37715 -29.92108 -29.46453 -28.56880 -28.31973 -27.46562 -25.08625 -24.40159 -21.97767 -21.12931 -20.94991 -20.29170 -18.92976 -18.03203 -17.46615 -17.25603 -16.85353 -16.72840 -16.14634 -15.95310 -15.15018 -15.08650 -14.94819 -14.82001 -14.56270 -14.37375 -14.30305 -14.14411 -13.34329 -13.31135 -13.14467 -13.02069 -12.75032 -12.60997 -12.39008 -12.27796 -12.18478 -12.02037 -12.00364 -11.88112 -11.78589 -11.39833 -11.26301 -11.18468 -10.76556 -10.71359 -10.57553 -8.96034 -8.22871 -5.65187 0.70437 1.19369 1.29453 1.38048 1.71802 1.99201 2.35595 2.99014 3.14108 3.23781 3.34233 3.55084 3.88005 3.90183 3.92312 3.99683 4.14610 4.17276 4.28366 4.52226 4.63515 4.64819 4.68387 4.75117 4.77145 4.77757 4.82745 4.83765 4.92839 4.93901 5.04107 5.04344 5.16091 5.22984 5.24105 5.31313 5.43719 5.47848 5.59798 5.90498 6.06225 6.20384 6.56505 6.85983 7.01112 7.53728 7.93357 8.95773 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.008513 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.381087 B = 3288.242259 C = 4489.579027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.092 4.092 3 C -0.126 4.126 4 C -0.135 4.135 5 C 0.521 3.479 6 O -0.522 6.522 7 N -0.586 5.586 8 C 0.324 3.676 9 N -0.586 5.586 10 C -0.252 4.252 11 H 0.042 0.958 12 C 0.015 3.985 13 N -0.925 5.925 14 Si 0.910 3.090 15 H -0.287 1.287 16 H -0.301 1.301 17 H -0.249 1.249 18 C 0.161 3.839 19 C -0.130 4.130 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.125 4.125 23 C 0.511 3.489 24 O -0.504 6.504 25 H 0.050 0.950 26 H 0.115 0.885 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 3.134 -16.341 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.096 4.096 3 C -0.183 4.183 4 C -0.174 4.174 5 C 0.312 3.688 6 O -0.398 6.398 7 N -0.333 5.333 8 C 0.116 3.884 9 N -0.307 5.307 10 C -0.381 4.381 11 H 0.060 0.940 12 C -0.184 4.184 13 N -0.566 5.566 14 Si 0.739 3.261 15 H -0.215 1.215 16 H -0.229 1.229 17 H -0.173 1.173 18 C 0.055 3.945 19 C -0.169 4.169 20 C -0.150 4.150 21 C -0.150 4.150 22 C -0.164 4.164 23 C 0.300 3.700 24 O -0.375 6.375 25 H 0.069 0.931 26 H 0.133 0.867 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.952 2.825 -15.802 16.170 hybrid contribution 0.675 0.061 1.448 1.598 sum 2.626 2.886 -14.354 14.875 Atomic orbital electron populations 1.21723 0.90007 1.02370 1.04201 1.21612 0.99215 0.97949 0.90790 1.21770 1.01167 0.90903 1.04496 1.22803 1.02126 0.94759 0.97701 1.21553 0.79170 0.86375 0.81714 1.90674 1.43443 1.38563 1.67096 1.48525 1.47355 1.27275 1.10163 1.21767 0.90767 0.84147 0.91683 1.44663 1.43720 1.12779 1.29588 1.18158 0.92617 1.38108 0.89216 0.94003 1.25779 0.99491 0.97259 0.95862 1.69954 1.35401 1.39029 1.12245 0.86349 0.84954 0.78049 0.76791 1.21502 1.22901 1.17285 1.21739 0.96087 0.85287 0.91340 1.22611 1.00060 0.95125 0.99106 1.22025 0.98982 0.96973 0.97066 1.22012 0.99933 0.93544 0.99517 1.22568 0.98353 0.96942 0.98542 1.21752 0.76523 0.80553 0.91143 1.90808 1.55870 1.69355 1.21505 0.93091 0.86695 0.93701 0.91955 0.86857 0.92731 0.84182 0.82977 0.92147 0.89369 0.93082 0.91108 0.92960 0.92548 0.91590 0.90374 0.90519 0.91651 0.93276 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.45 71.98 0.61 -2.31 16 2 C -0.09 -2.31 1.05 -52.32 -0.06 -2.36 16 3 C -0.13 -2.37 8.45 71.98 0.61 -1.77 16 4 C -0.13 -2.74 6.32 30.46 0.19 -2.55 16 5 C 0.52 16.84 8.08 87.99 0.71 17.55 16 6 O -0.52 -18.92 17.47 -2.87 -0.05 -18.97 16 7 N -0.59 -23.13 2.79 -767.64 -2.14 -25.27 16 8 C 0.32 14.64 4.93 170.96 0.84 15.48 16 9 N -0.59 -27.98 2.36 -682.35 -1.61 -29.59 16 10 C -0.25 -14.20 8.12 84.03 0.68 -13.52 16 11 H 0.04 2.66 7.11 -2.91 -0.02 2.64 16 12 C 0.02 0.91 5.29 84.86 0.45 1.36 16 13 N -0.92 -59.10 13.97 21.65 0.30 -58.80 16 14 Si 0.91 47.05 25.12 68.60 1.72 48.77 16 15 H -0.29 -14.84 6.66 99.48 0.66 -14.18 16 16 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 17 H -0.25 -12.01 7.11 99.48 0.71 -11.31 16 18 C 0.16 6.53 3.43 46.31 0.16 6.69 16 19 C -0.13 -4.94 6.32 31.70 0.20 -4.74 16 20 C -0.11 -3.30 6.80 31.32 0.21 -3.08 16 21 C -0.11 -3.28 6.80 31.32 0.21 -3.06 16 22 C -0.12 -4.66 6.41 31.67 0.20 -4.45 16 23 C 0.51 20.30 6.74 87.99 0.59 20.90 16 24 O -0.50 -25.62 17.48 -2.85 -0.05 -25.67 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.14 2.22 7.74 -2.39 -0.02 2.20 16 32 H 0.15 1.96 7.74 -2.38 -0.02 1.94 16 33 H 0.06 3.06 3.10 -2.39 -0.01 3.05 16 34 H 0.09 3.65 7.58 -2.39 -0.02 3.64 16 35 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 36 H 0.07 2.79 7.84 -2.39 -0.02 2.77 16 37 H 0.05 2.33 6.98 -2.39 -0.02 2.31 16 38 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.04 1.69 6.86 -2.39 -0.02 1.67 16 Total: -1.00 -76.29 348.22 4.73 -71.56 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.94 Total: 13.84 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 5.62 Total: 24.13 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.45 Total: -113.66 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.10 Total: -44.64 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.72 Total: 48.77 kcal Total: -76.29 4.73 -71.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153416482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.807 kcal (2) G-P(sol) polarization free energy of solvation -76.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds