Wall clock time and date at job start Tue Mar 31 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50697 * 120.00229 * 2 1 4 4 C 1.31003 * 119.99754 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00087 * 354.11983 * 4 2 1 6 6 C 1.53004 * 109.46982 * 121.50287 * 5 4 2 7 7 C 1.52998 * 109.46877 * 180.02562 * 6 5 4 8 8 C 1.52999 * 110.53890 * 302.83166 * 7 6 5 9 9 N 1.47314 * 110.59740 * 65.83371 * 7 6 5 10 10 C 1.34528 * 106.61992 * 118.52686 * 9 7 6 11 11 O 1.21538 * 123.76996 * 179.97438 * 10 9 7 12 12 N 1.33792 * 112.45572 * 359.97438 * 10 9 7 13 13 C 1.46499 * 124.17129 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47048 * 270.03943 * 13 12 10 15 15 C 1.50700 * 109.47255 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00132 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00157 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46842 * 60.00293 * 19 17 15 21 21 H 1.48506 * 109.46877 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46906 * 299.99802 * 19 17 15 23 23 C 1.34761 * 111.64762 * 0.02562 * 12 10 9 24 24 O 1.21235 * 127.16016 * 180.02562 * 23 12 10 25 25 H 1.09004 * 109.47123 * 264.79530 * 1 2 3 26 26 H 1.09001 * 109.46919 * 24.79096 * 1 2 3 27 27 H 1.08995 * 109.47253 * 144.79214 * 1 2 3 28 28 H 1.09010 * 109.46848 * 269.99939 * 3 2 1 29 29 H 1.08998 * 109.47561 * 29.99569 * 3 2 1 30 30 H 1.09006 * 109.47306 * 150.00251 * 3 2 1 31 31 H 1.08002 * 120.00043 * 174.13489 * 4 2 1 32 32 H 1.09000 * 109.47279 * 1.50751 * 5 4 2 33 33 H 1.09001 * 109.47233 * 241.50639 * 5 4 2 34 34 H 1.08998 * 109.46953 * 300.00434 * 6 5 4 35 35 H 1.08999 * 109.46619 * 60.00672 * 6 5 4 36 36 H 1.09004 * 109.47020 * 60.00070 * 8 7 6 37 37 H 1.08995 * 109.47098 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.46751 * 300.00085 * 8 7 6 39 39 H 0.97003 * 126.68712 * 298.49950 * 9 7 6 40 40 H 1.08995 * 109.48047 * 30.04240 * 13 12 10 41 41 H 1.09003 * 109.47350 * 150.04445 * 13 12 10 42 42 H 1.09001 * 109.47122 * 300.00307 * 14 13 12 43 43 H 1.08993 * 109.47134 * 60.00152 * 14 13 12 44 44 H 0.96991 * 120.00459 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4144 -2.4362 0.1326 6 6 1.7033 -3.3171 -1.0846 7 6 0.9438 -4.6384 -0.9497 8 6 1.3275 -5.3478 0.3504 9 7 -0.5101 -4.4088 -1.0091 10 6 -0.9625 -5.0823 -2.0822 11 8 -2.1290 -5.1056 -2.4228 12 7 0.0151 -5.7236 -2.7325 13 6 -0.1908 -6.5349 -3.9348 14 6 -0.4799 -7.9819 -3.5303 15 6 -0.6911 -8.8167 -4.7670 16 1 -0.6253 -8.3609 -5.7439 17 6 -0.9684 -10.1623 -4.6515 18 7 -1.0482 -10.7175 -3.4619 19 14 -1.2310 -11.1969 -6.1845 20 1 -0.0083 -11.1536 -7.0262 21 1 -1.5115 -12.6014 -5.7918 22 1 -2.3811 -10.6584 -6.9540 23 6 1.2124 -5.5319 -2.1444 24 8 2.2820 -5.9802 -2.4977 25 1 -0.3633 -0.0932 1.0235 26 1 -0.3633 0.9330 -0.4309 27 1 -0.3633 -0.8396 -0.5925 28 1 2.4422 1.6197 -1.0278 29 1 1.6715 2.0648 0.5137 30 1 3.2130 1.1747 0.5138 31 1 3.2377 -1.1370 -0.0961 32 1 0.3444 -2.2365 0.1907 33 1 1.7377 -2.9500 1.0379 34 1 1.3800 -2.8032 -1.9899 35 1 2.7733 -3.5169 -1.1426 36 1 1.0806 -4.7097 1.1990 37 1 0.7776 -6.2856 0.4285 38 1 2.3979 -5.5535 0.3497 39 1 -1.0383 -3.8762 -0.3941 40 1 -1.0352 -6.1400 -4.4996 41 1 0.7065 -6.5029 -4.5529 42 1 0.3646 -8.3769 -2.9655 43 1 -1.3771 -8.0140 -2.9123 44 1 -1.2436 -11.6640 -3.3805 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153742417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:32 Heat of formation + Delta-G solvation = -51.789048 kcal Electronic energy + Delta-G solvation = -23994.613208 eV Core-core repulsion = 20526.474116 eV Total energy + Delta-G solvation = -3468.139092 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.23994 -38.28005 -37.79010 -36.25937 -35.27199 -33.34124 -32.37324 -30.07796 -29.86271 -28.13127 -26.95965 -25.67008 -24.34578 -22.87006 -21.96027 -20.49820 -19.83818 -18.14772 -17.64754 -16.72264 -16.17257 -16.04338 -15.65307 -15.41332 -14.82348 -14.76978 -14.42590 -14.31958 -14.02976 -13.82044 -13.37311 -13.14048 -12.93730 -12.72298 -12.55556 -12.35399 -12.26950 -12.20911 -11.90287 -11.81957 -11.54316 -11.11642 -10.93887 -10.92335 -10.85143 -10.45047 -10.12559 -10.06890 -9.74199 -9.38218 -9.25247 -8.92337 -8.85542 -8.37676 -6.02672 -4.06517 1.84215 1.96803 2.61879 3.31406 3.34893 3.38462 3.41311 3.43554 4.09842 4.28945 4.45643 4.57732 4.61895 4.71499 4.90739 5.08304 5.09360 5.18822 5.28182 5.33792 5.35459 5.44823 5.46318 5.51084 5.55928 5.60496 5.62125 5.69652 5.77014 5.89987 6.00348 6.07366 6.18321 6.33005 6.39955 6.64236 6.67020 6.94958 7.40944 7.58632 7.72624 7.74988 7.94254 8.29358 8.48999 8.98369 9.57367 11.09061 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032384 B = 0.003084 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.418461 B = 9076.383079 C = 9262.641695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.117 4.117 4 C -0.164 4.164 5 C -0.094 4.094 6 C -0.107 4.107 7 C 0.120 3.880 8 C -0.149 4.149 9 N -0.727 5.727 10 C 0.702 3.298 11 O -0.540 6.540 12 N -0.567 5.567 13 C 0.119 3.881 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.893 5.893 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.527 3.473 24 O -0.467 6.467 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.432 0.568 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.464 21.566 10.961 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.134 4.134 3 C -0.174 4.174 4 C -0.182 4.182 5 C -0.131 4.131 6 C -0.145 4.145 7 C 0.029 3.971 8 C -0.207 4.207 9 N -0.393 5.393 10 C 0.403 3.597 11 O -0.413 6.413 12 N -0.312 5.312 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.313 3.687 24 O -0.336 6.336 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.276 0.724 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.377 21.047 10.535 24.385 hybrid contribution -0.379 -0.471 -0.492 0.779 sum 5.998 20.577 10.042 23.669 Atomic orbital electron populations 1.20909 0.92413 1.02565 1.02041 1.21635 0.95857 0.95075 1.00852 1.20826 0.99578 0.95013 1.01990 1.22587 0.99578 0.93440 1.02583 1.20833 1.00590 0.93726 0.97990 1.21722 1.00975 0.92220 0.99603 1.21469 0.82433 0.96565 0.96654 1.22027 1.03476 1.01034 0.94134 1.45654 1.08022 1.54981 1.30604 1.15941 0.84889 0.78492 0.80424 1.90998 1.15173 1.65431 1.69722 1.46716 1.08658 1.46617 1.29224 1.22204 1.02352 0.93172 0.82300 1.19399 0.97649 0.87589 0.97851 1.20961 1.49176 0.93635 0.92322 0.92282 1.24996 0.95112 0.97947 0.96162 1.69959 1.48616 1.12148 1.22380 0.86562 0.78779 0.79107 0.83008 1.20101 1.21239 1.20079 1.20639 0.84051 0.80135 0.83870 1.90769 1.25948 1.49977 1.66921 0.91551 0.92054 0.91241 0.91641 0.91936 0.91965 0.87208 0.90799 0.90107 0.90781 0.89301 0.90401 0.91058 0.89890 0.72423 0.89713 0.89930 0.96085 0.95784 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.00 36.00 0.32 -0.50 16 2 C -0.13 -0.98 6.05 -101.07 -0.61 -1.59 16 3 C -0.12 -0.72 10.00 36.00 0.36 -0.36 16 4 C -0.16 -1.22 9.10 -36.03 -0.33 -1.55 16 5 C -0.09 -0.68 4.86 -27.88 -0.14 -0.81 16 6 C -0.11 -1.00 4.56 -26.73 -0.12 -1.12 16 7 C 0.12 1.43 1.01 -132.09 -0.13 1.29 16 8 C -0.15 -1.49 8.55 37.16 0.32 -1.17 16 9 N -0.73 -9.06 5.62 -52.93 -0.30 -9.36 16 10 C 0.70 12.60 8.62 -88.02 -0.76 11.84 16 11 O -0.54 -11.64 17.48 5.33 0.09 -11.55 16 12 N -0.57 -10.84 2.60 -120.73 -0.31 -11.16 16 13 C 0.12 2.61 5.64 -4.04 -0.02 2.58 16 14 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 15 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.53 9.02 6.98 -10.56 -0.07 8.94 16 24 O -0.47 -9.13 17.76 5.60 0.10 -9.03 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 28 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.11 0.77 8.05 -52.49 -0.42 0.35 16 32 H 0.07 0.50 4.82 -51.93 -0.25 0.25 16 33 H 0.08 0.50 6.47 -51.93 -0.34 0.17 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.55 6.49 -51.93 -0.34 0.22 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.43 4.08 8.40 -40.82 -0.34 3.73 16 40 H 0.08 1.84 7.86 -51.93 -0.41 1.43 16 41 H 0.08 1.75 8.00 -51.93 -0.42 1.33 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -34.31 363.94 -8.00 -42.30 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -7.04 Total: -1.10 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.74 Total: 4.06 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.12 Total: -47.10 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: 0.19 Total: -20.58 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.31 -8.00 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153742417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.485 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds