Wall clock time and date at job start Tue Mar 31 2020 06:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50697 * 120.00229 * 2 1 4 4 C 1.31003 * 119.99754 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00087 * 354.11983 * 4 2 1 6 6 C 1.53004 * 109.46982 * 121.50287 * 5 4 2 7 7 C 1.52998 * 109.46877 * 180.02562 * 6 5 4 8 8 C 1.52999 * 110.53890 * 302.83166 * 7 6 5 9 9 N 1.47314 * 110.59740 * 65.83371 * 7 6 5 10 10 C 1.34528 * 106.61992 * 118.52686 * 9 7 6 11 11 O 1.21538 * 123.76996 * 179.97438 * 10 9 7 12 12 N 1.33792 * 112.45572 * 359.97438 * 10 9 7 13 13 C 1.46499 * 124.17129 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47048 * 270.03943 * 13 12 10 15 15 C 1.50700 * 109.47255 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00016 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00132 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00157 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46842 * 60.00293 * 19 17 15 21 21 H 1.48506 * 109.46877 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46906 * 299.99802 * 19 17 15 23 23 C 1.34761 * 111.64762 * 0.02562 * 12 10 9 24 24 O 1.21235 * 127.16016 * 180.02562 * 23 12 10 25 25 H 1.09004 * 109.47123 * 264.79530 * 1 2 3 26 26 H 1.09001 * 109.46919 * 24.79096 * 1 2 3 27 27 H 1.08995 * 109.47253 * 144.79214 * 1 2 3 28 28 H 1.09010 * 109.46848 * 269.99939 * 3 2 1 29 29 H 1.08998 * 109.47561 * 29.99569 * 3 2 1 30 30 H 1.09006 * 109.47306 * 150.00251 * 3 2 1 31 31 H 1.08002 * 120.00043 * 174.13489 * 4 2 1 32 32 H 1.09000 * 109.47279 * 1.50751 * 5 4 2 33 33 H 1.09001 * 109.47233 * 241.50639 * 5 4 2 34 34 H 1.08998 * 109.46953 * 300.00434 * 6 5 4 35 35 H 1.08999 * 109.46619 * 60.00672 * 6 5 4 36 36 H 1.09004 * 109.47020 * 60.00070 * 8 7 6 37 37 H 1.08995 * 109.47098 * 180.02562 * 8 7 6 38 38 H 1.09003 * 109.46751 * 300.00085 * 8 7 6 39 39 H 0.97003 * 126.68712 * 298.49950 * 9 7 6 40 40 H 1.08995 * 109.48047 * 30.04240 * 13 12 10 41 41 H 1.09003 * 109.47350 * 150.04445 * 13 12 10 42 42 H 1.09001 * 109.47122 * 300.00307 * 14 13 12 43 43 H 1.08993 * 109.47134 * 60.00152 * 14 13 12 44 44 H 0.96991 * 120.00459 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1619 -1.1345 -0.0005 5 6 1.4144 -2.4362 0.1326 6 6 1.7033 -3.3171 -1.0846 7 6 0.9438 -4.6384 -0.9497 8 6 1.3275 -5.3478 0.3504 9 7 -0.5101 -4.4088 -1.0091 10 6 -0.9625 -5.0823 -2.0822 11 8 -2.1290 -5.1056 -2.4228 12 7 0.0151 -5.7236 -2.7325 13 6 -0.1908 -6.5349 -3.9348 14 6 -0.4799 -7.9819 -3.5303 15 6 -0.6911 -8.8167 -4.7670 16 1 -0.6253 -8.3609 -5.7439 17 6 -0.9684 -10.1623 -4.6515 18 7 -1.0482 -10.7175 -3.4619 19 14 -1.2310 -11.1969 -6.1845 20 1 -0.0083 -11.1536 -7.0262 21 1 -1.5115 -12.6014 -5.7918 22 1 -2.3811 -10.6584 -6.9540 23 6 1.2124 -5.5319 -2.1444 24 8 2.2820 -5.9802 -2.4977 25 1 -0.3633 -0.0932 1.0235 26 1 -0.3633 0.9330 -0.4309 27 1 -0.3633 -0.8396 -0.5925 28 1 2.4422 1.6197 -1.0278 29 1 1.6715 2.0648 0.5137 30 1 3.2130 1.1747 0.5138 31 1 3.2377 -1.1370 -0.0961 32 1 0.3444 -2.2365 0.1907 33 1 1.7377 -2.9500 1.0379 34 1 1.3800 -2.8032 -1.9899 35 1 2.7733 -3.5169 -1.1426 36 1 1.0806 -4.7097 1.1990 37 1 0.7776 -6.2856 0.4285 38 1 2.3979 -5.5535 0.3497 39 1 -1.0383 -3.8762 -0.3941 40 1 -1.0352 -6.1400 -4.4996 41 1 0.7065 -6.5029 -4.5529 42 1 0.3646 -8.3769 -2.9655 43 1 -1.3771 -8.0140 -2.9123 44 1 -1.2436 -11.6640 -3.3805 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153742417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:30 Heat of formation + Delta-G solvation = -73.915230 kcal Electronic energy + Delta-G solvation = -23995.572671 eV Core-core repulsion = 20526.474116 eV Total energy + Delta-G solvation = -3469.098555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -43.59953 -39.73001 -38.65412 -37.29878 -36.87823 -35.21545 -33.60980 -31.78452 -30.88739 -28.62159 -27.72570 -27.44066 -25.59201 -24.15492 -23.63123 -21.58225 -21.34456 -19.09352 -18.75119 -18.60176 -17.67884 -17.33662 -16.69792 -16.56907 -16.42251 -16.29711 -15.61989 -15.28986 -14.96176 -14.87213 -14.81820 -14.47238 -14.17725 -13.88887 -13.64227 -13.38942 -13.19039 -13.10258 -12.86902 -12.78249 -12.74528 -12.69905 -12.36363 -12.12179 -12.10925 -11.91323 -11.75931 -11.50092 -11.45551 -11.11589 -10.74541 -10.62695 -10.44183 -9.47389 -8.26680 -6.40110 0.55196 1.20871 1.35110 1.39889 1.43906 1.51633 1.96390 2.14816 2.38887 2.87492 3.07330 3.43714 3.67880 3.98145 4.04695 4.18583 4.25828 4.36760 4.39340 4.43984 4.50056 4.57012 4.63943 4.69090 4.73306 4.77467 4.80623 4.89194 4.92071 5.00924 5.05559 5.14175 5.21087 5.28590 5.31862 5.32783 5.39955 5.69576 5.80250 5.88211 6.05627 6.10917 6.11781 6.37488 6.73594 7.10817 7.29699 8.86107 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032384 B = 0.003084 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.418461 B = 9076.383079 C = 9262.641695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 C -0.119 4.119 4 C -0.172 4.172 5 C -0.088 4.088 6 C -0.098 4.098 7 C 0.134 3.866 8 C -0.147 4.147 9 N -0.697 5.697 10 C 0.697 3.303 11 O -0.582 6.582 12 N -0.581 5.581 13 C 0.133 3.867 14 C 0.026 3.974 15 C -0.547 4.547 16 H 0.071 0.929 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.975 3.025 20 H -0.263 1.263 21 H -0.282 1.282 22 H -0.264 1.264 23 C 0.516 3.484 24 O -0.496 6.496 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.450 0.550 40 H 0.085 0.915 41 H 0.090 0.910 42 H -0.010 1.010 43 H -0.011 1.011 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.023 22.925 11.478 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 C -0.176 4.176 4 C -0.190 4.190 5 C -0.125 4.125 6 C -0.137 4.137 7 C 0.044 3.956 8 C -0.205 4.205 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.458 6.458 12 N -0.325 5.325 13 C 0.012 3.988 14 C -0.012 4.012 15 C -0.585 4.585 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.189 1.189 23 C 0.305 3.695 24 O -0.367 6.367 25 H 0.094 0.906 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.298 0.702 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.009 0.991 43 H 0.007 0.993 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.959 22.463 11.105 26.007 hybrid contribution -0.513 -0.855 -0.599 1.163 sum 6.446 21.609 10.507 24.877 Atomic orbital electron populations 1.20944 0.92145 1.02530 1.02551 1.21855 0.96283 0.95562 1.00384 1.20859 0.99834 0.94743 1.02146 1.22640 0.99860 0.93451 1.03094 1.20829 1.01116 0.93276 0.97293 1.21716 1.00735 0.90573 1.00632 1.21605 0.81907 0.97052 0.95009 1.22119 1.03811 1.00634 0.93956 1.45497 1.08501 1.53448 1.28830 1.16076 0.84050 0.78731 0.81338 1.90965 1.16712 1.67068 1.71100 1.46720 1.10135 1.46666 1.28969 1.21733 1.02635 0.90740 0.83673 1.19159 0.94622 0.90767 0.96663 1.21438 1.49318 0.94496 0.93271 0.91090 1.26058 0.94424 0.99447 0.99854 1.70104 1.49375 1.12685 1.25024 0.85358 0.79337 0.77002 0.78508 1.18747 1.20691 1.18906 1.21585 0.82935 0.80163 0.84835 1.90742 1.26714 1.51271 1.67990 0.90643 0.91871 0.91656 0.91671 0.91307 0.91508 0.86883 0.90131 0.88329 0.91594 0.88659 0.86354 0.93155 0.88943 0.70194 0.89611 0.89217 0.99140 0.99293 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.00 71.23 0.64 -0.76 16 2 C -0.14 -1.74 6.05 -16.49 -0.10 -1.84 16 3 C -0.12 -1.23 10.00 71.23 0.71 -0.51 16 4 C -0.17 -2.10 9.10 25.64 0.23 -1.87 16 5 C -0.09 -0.97 4.86 29.85 0.15 -0.83 16 6 C -0.10 -1.61 4.56 30.60 0.14 -1.47 16 7 C 0.13 2.99 1.01 2.98 0.00 2.99 16 8 C -0.15 -2.61 8.55 71.98 0.62 -1.99 16 9 N -0.70 -16.40 5.62 -439.81 -2.47 -18.87 16 10 C 0.70 25.25 8.62 179.44 1.55 26.80 16 11 O -0.58 -25.64 17.48 -3.83 -0.07 -25.71 16 12 N -0.58 -22.72 2.60 -773.13 -2.01 -24.74 16 13 C 0.13 6.04 5.64 86.38 0.49 6.53 16 14 C 0.03 1.46 5.30 29.85 0.16 1.62 16 15 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 16 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 17 C 0.00 0.03 5.46 84.65 0.46 0.49 16 18 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 19 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.52 17.74 6.98 87.94 0.61 18.36 16 24 O -0.50 -19.67 17.76 -2.89 -0.05 -19.72 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.68 8.09 -2.39 -0.02 0.66 16 27 H 0.06 0.78 6.54 -2.39 -0.02 0.77 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 29 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 30 H 0.07 0.62 8.07 -2.38 -0.02 0.60 16 31 H 0.11 1.30 8.05 -2.91 -0.02 1.28 16 32 H 0.08 0.80 4.82 -2.39 -0.01 0.79 16 33 H 0.10 0.78 6.47 -2.39 -0.02 0.76 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 1.17 6.49 -2.38 -0.02 1.16 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.45 7.41 8.40 -92.71 -0.78 6.63 16 40 H 0.09 3.85 7.86 -2.39 -0.02 3.83 16 41 H 0.09 3.90 8.00 -2.39 -0.02 3.88 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -77.28 363.94 3.82 -73.46 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.22 Total: 11.06 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 5.89 Total: 15.56 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -4.20 Total: -101.85 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.12 Total: -45.43 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -77.28 3.82 -73.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153742417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.452 kcal (2) G-P(sol) polarization free energy of solvation -77.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds