Wall clock time and date at job start Tue Mar 31 2020 06:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00061 * 2 1 4 4 C 1.30995 * 120.00022 * 179.97438 * 2 1 3 5 5 C 1.50705 * 120.00089 * 353.77774 * 4 2 1 6 6 C 1.52992 * 109.47265 * 233.74341 * 5 4 2 7 7 C 1.53001 * 109.47359 * 179.97438 * 6 5 4 8 8 C 1.52998 * 110.53032 * 62.17245 * 7 6 5 9 9 N 1.47310 * 110.59960 * 299.17523 * 7 6 5 10 10 C 1.34525 * 106.61927 * 241.46789 * 9 7 6 11 11 O 1.21538 * 123.76910 * 179.97438 * 10 9 7 12 12 N 1.33790 * 112.45956 * 0.02562 * 10 9 7 13 13 C 1.46499 * 124.17898 * 179.97438 * 12 10 9 14 14 C 1.53011 * 109.47102 * 270.04157 * 13 12 10 15 15 C 1.50699 * 109.46783 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99710 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46721 * 60.00071 * 19 17 15 21 21 H 1.48500 * 109.47462 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47437 * 300.00505 * 19 17 15 23 23 C 1.34766 * 111.64251 * 359.97438 * 12 10 9 24 24 O 1.21238 * 127.15739 * 180.02562 * 23 12 10 25 25 H 1.08994 * 109.47610 * 265.00556 * 1 2 3 26 26 H 1.09004 * 109.46802 * 25.00280 * 1 2 3 27 27 H 1.08997 * 109.47346 * 144.99848 * 1 2 3 28 28 H 1.09003 * 109.47095 * 269.99571 * 3 2 1 29 29 H 1.09005 * 109.47293 * 29.99535 * 3 2 1 30 30 H 1.09003 * 109.47255 * 149.99154 * 3 2 1 31 31 H 1.07999 * 120.00186 * 173.77477 * 4 2 1 32 32 H 1.09005 * 109.46949 * 113.74174 * 5 4 2 33 33 H 1.08998 * 109.47065 * 353.74459 * 5 4 2 34 34 H 1.09000 * 109.47670 * 299.99920 * 6 5 4 35 35 H 1.09005 * 109.47274 * 60.00032 * 6 5 4 36 36 H 1.08997 * 109.47645 * 60.00065 * 8 7 6 37 37 H 1.09000 * 109.47036 * 180.02562 * 8 7 6 38 38 H 1.09004 * 109.47378 * 299.99837 * 8 7 6 39 39 H 0.97005 * 126.68968 * 61.45234 * 9 7 6 40 40 H 1.08999 * 109.47048 * 30.04062 * 13 12 10 41 41 H 1.09002 * 109.47180 * 150.04413 * 13 12 10 42 42 H 1.08999 * 109.47092 * 299.99878 * 14 13 12 43 43 H 1.09002 * 109.46893 * 60.00081 * 14 13 12 44 44 H 0.96997 * 119.99801 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1344 0.0005 5 6 1.4151 -2.4357 0.1425 6 6 2.0081 -3.2403 1.3008 7 6 1.2495 -4.5611 1.4455 8 6 1.4028 -5.4091 0.1813 9 7 -0.1728 -4.3126 1.7374 10 6 -0.4207 -4.8630 2.9396 11 8 -1.5075 -4.8378 3.4831 12 7 0.6631 -5.4404 3.4707 13 6 0.6824 -6.1155 4.7707 14 6 1.0369 -5.1059 5.8645 15 6 1.0574 -5.8005 7.2016 16 1 0.8390 -6.8563 7.2651 17 6 1.3550 -5.0882 8.3440 18 7 1.6205 -3.8024 8.2667 19 14 1.3797 -5.9489 10.0017 20 1 2.3937 -7.0337 9.9809 21 1 1.7239 -4.9691 11.0632 22 1 0.0407 -6.5282 10.2787 23 6 1.7348 -5.3242 2.6619 24 8 2.8543 -5.7431 2.8650 25 1 -0.3634 -0.0895 1.0237 26 1 -0.3633 0.9314 -0.4344 27 1 -0.3634 -0.8418 -0.5894 28 1 2.4422 1.6197 -1.0277 29 1 1.6713 2.0648 0.5138 30 1 3.2128 1.1748 0.5140 31 1 3.2372 -1.1373 -0.1009 32 1 1.5040 -3.0083 -0.7807 33 1 0.3635 -2.2310 0.3432 34 1 3.0598 -3.4451 1.1002 35 1 1.9192 -2.6677 2.2241 36 1 2.4581 -5.6239 0.0135 37 1 0.8561 -6.3443 0.3026 38 1 1.0028 -4.8632 -0.6732 39 1 -0.8070 -3.8433 1.1730 40 1 -0.3003 -6.5410 4.9738 41 1 1.4270 -6.9114 4.7558 42 1 2.0197 -4.6803 5.6614 43 1 0.2923 -4.3100 5.8794 44 1 1.8302 -3.3013 9.0704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153742509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:35 Heat of formation + Delta-G solvation = -52.293693 kcal Electronic energy + Delta-G solvation = -24124.317030 eV Core-core repulsion = 20656.156055 eV Total energy + Delta-G solvation = -3468.160975 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.23781 -38.26593 -37.70622 -36.23464 -35.26686 -33.31953 -32.32622 -30.10969 -29.86671 -28.05617 -26.89660 -25.66183 -24.29606 -22.86338 -21.88916 -20.52628 -19.85778 -18.06648 -17.63880 -16.68509 -16.15182 -16.02435 -15.50075 -15.42159 -14.82378 -14.73379 -14.44504 -14.24414 -14.01672 -13.79470 -13.35587 -13.10273 -12.94011 -12.63522 -12.59219 -12.36821 -12.25331 -12.07127 -11.91946 -11.72347 -11.54539 -11.07297 -10.93346 -10.86600 -10.84974 -10.44442 -10.12156 -10.06453 -9.72696 -9.37237 -9.24713 -8.85763 -8.82395 -8.37289 -6.02304 -4.06196 1.88856 2.01717 2.62200 3.31614 3.35060 3.38719 3.41587 3.43950 4.10106 4.34486 4.46001 4.58791 4.70343 4.79242 4.95859 5.15081 5.16266 5.26964 5.31927 5.34176 5.37723 5.46631 5.52209 5.53977 5.61282 5.65688 5.69698 5.76701 5.79492 5.95362 6.03428 6.07350 6.18558 6.33115 6.49165 6.67234 6.74048 6.95171 7.41163 7.59001 7.72872 7.75150 7.94557 8.29654 8.49195 8.98666 9.57694 11.09367 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.003804 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.505064 B = 7359.229482 C = 8124.833074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.133 4.133 3 C -0.118 4.118 4 C -0.165 4.165 5 C -0.091 4.091 6 C -0.108 4.108 7 C 0.120 3.880 8 C -0.145 4.145 9 N -0.727 5.727 10 C 0.702 3.298 11 O -0.540 6.540 12 N -0.568 5.568 13 C 0.119 3.881 14 C 0.013 3.987 15 C -0.523 4.523 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.898 3.102 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.527 3.473 24 O -0.466 6.466 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.432 0.568 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 5.023 -21.926 22.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.133 4.133 3 C -0.174 4.174 4 C -0.183 4.183 5 C -0.128 4.128 6 C -0.146 4.146 7 C 0.029 3.971 8 C -0.204 4.204 9 N -0.392 5.392 10 C 0.402 3.598 11 O -0.413 6.413 12 N -0.312 5.312 13 C 0.000 4.000 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.313 3.687 24 O -0.336 6.336 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.276 0.724 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.089 4.880 -21.270 21.823 hybrid contribution -0.181 -0.058 0.780 0.803 sum -0.270 4.823 -20.489 21.051 Atomic orbital electron populations 1.20898 0.92475 1.02137 1.02365 1.21628 0.95839 0.95113 1.00676 1.20828 0.99828 0.95039 1.01747 1.22562 0.99610 0.93473 1.02701 1.20735 0.99725 0.94294 0.98048 1.21709 1.00008 0.92589 1.00307 1.21459 0.82689 0.97151 0.95797 1.21996 1.04020 0.99477 0.94863 1.45655 1.11152 1.61542 1.20885 1.15942 0.84206 0.78344 0.81259 1.90997 1.23491 1.62368 1.64476 1.46717 1.10532 1.52353 1.21614 1.22208 1.03058 0.96654 0.78108 1.19399 0.97383 0.94145 0.91536 1.20963 1.48320 0.95626 0.91238 0.92282 1.24992 0.94996 0.94841 0.99347 1.69965 1.46978 1.07038 1.29079 0.86565 0.78608 0.79233 0.83063 1.20100 1.21229 1.20090 1.20637 0.84757 0.78914 0.84386 1.90770 1.18907 1.47599 1.76330 0.91234 0.92093 0.91597 0.91804 0.91803 0.91833 0.87206 0.90658 0.90874 0.89296 0.90352 0.89905 0.91515 0.90429 0.72400 0.89714 0.89925 0.96090 0.95801 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 8.90 36.00 0.32 -0.64 16 2 C -0.13 -1.16 6.05 -101.07 -0.61 -1.77 16 3 C -0.12 -0.91 10.00 36.00 0.36 -0.55 16 4 C -0.17 -1.46 9.10 -36.02 -0.33 -1.78 16 5 C -0.09 -0.74 4.82 -27.88 -0.13 -0.88 16 6 C -0.11 -1.16 4.54 -26.73 -0.12 -1.28 16 7 C 0.12 1.43 1.01 -132.09 -0.13 1.30 16 8 C -0.15 -1.26 8.68 37.16 0.32 -0.94 16 9 N -0.73 -9.10 5.52 -52.94 -0.29 -9.39 16 10 C 0.70 12.62 8.62 -88.02 -0.76 11.86 16 11 O -0.54 -11.66 17.48 5.33 0.09 -11.57 16 12 N -0.57 -10.86 2.60 -120.72 -0.31 -11.17 16 13 C 0.12 2.61 5.64 -4.04 -0.02 2.58 16 14 C 0.01 0.35 5.30 -27.88 -0.15 0.21 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -27.32 13.29 55.43 0.74 -26.59 16 19 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.53 9.03 6.98 -10.56 -0.07 8.95 16 24 O -0.47 -9.13 17.76 5.59 0.10 -9.03 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.46 6.71 -51.93 -0.35 0.11 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.11 0.92 8.05 -52.49 -0.42 0.50 16 32 H 0.08 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.07 0.58 4.83 -51.93 -0.25 0.33 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.48 6.59 -51.93 -0.34 0.13 16 39 H 0.43 4.11 8.23 -40.82 -0.34 3.77 16 40 H 0.08 1.84 7.86 -51.93 -0.41 1.43 16 41 H 0.08 1.75 8.00 -51.93 -0.42 1.33 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.38 364.01 -8.00 -42.38 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -7.05 Total: -0.41 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.74 Total: 3.35 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.13 Total: -47.15 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.19 Total: -20.60 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.38 -8.00 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153742509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.914 kcal (2) G-P(sol) polarization free energy of solvation -34.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds