Wall clock time and date at job start Tue Mar 31 2020 06:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50696 * 120.00061 * 2 1 4 4 C 1.30995 * 120.00022 * 179.97438 * 2 1 3 5 5 C 1.50705 * 120.00089 * 353.77774 * 4 2 1 6 6 C 1.52992 * 109.47265 * 233.74341 * 5 4 2 7 7 C 1.53001 * 109.47359 * 179.97438 * 6 5 4 8 8 C 1.52998 * 110.53032 * 62.17245 * 7 6 5 9 9 N 1.47310 * 110.59960 * 299.17523 * 7 6 5 10 10 C 1.34525 * 106.61927 * 241.46789 * 9 7 6 11 11 O 1.21538 * 123.76910 * 179.97438 * 10 9 7 12 12 N 1.33790 * 112.45956 * 0.02562 * 10 9 7 13 13 C 1.46499 * 124.17898 * 179.97438 * 12 10 9 14 14 C 1.53011 * 109.47102 * 270.04157 * 13 12 10 15 15 C 1.50699 * 109.46783 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00106 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99710 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46721 * 60.00071 * 19 17 15 21 21 H 1.48500 * 109.47462 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47437 * 300.00505 * 19 17 15 23 23 C 1.34766 * 111.64251 * 359.97438 * 12 10 9 24 24 O 1.21238 * 127.15739 * 180.02562 * 23 12 10 25 25 H 1.08994 * 109.47610 * 265.00556 * 1 2 3 26 26 H 1.09004 * 109.46802 * 25.00280 * 1 2 3 27 27 H 1.08997 * 109.47346 * 144.99848 * 1 2 3 28 28 H 1.09003 * 109.47095 * 269.99571 * 3 2 1 29 29 H 1.09005 * 109.47293 * 29.99535 * 3 2 1 30 30 H 1.09003 * 109.47255 * 149.99154 * 3 2 1 31 31 H 1.07999 * 120.00186 * 173.77477 * 4 2 1 32 32 H 1.09005 * 109.46949 * 113.74174 * 5 4 2 33 33 H 1.08998 * 109.47065 * 353.74459 * 5 4 2 34 34 H 1.09000 * 109.47670 * 299.99920 * 6 5 4 35 35 H 1.09005 * 109.47274 * 60.00032 * 6 5 4 36 36 H 1.08997 * 109.47645 * 60.00065 * 8 7 6 37 37 H 1.09000 * 109.47036 * 180.02562 * 8 7 6 38 38 H 1.09004 * 109.47378 * 299.99837 * 8 7 6 39 39 H 0.97005 * 126.68968 * 61.45234 * 9 7 6 40 40 H 1.08999 * 109.47048 * 30.04062 * 13 12 10 41 41 H 1.09002 * 109.47180 * 150.04413 * 13 12 10 42 42 H 1.08999 * 109.47092 * 299.99878 * 14 13 12 43 43 H 1.09002 * 109.46893 * 60.00081 * 14 13 12 44 44 H 0.96997 * 119.99801 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1619 -1.1344 0.0005 5 6 1.4151 -2.4357 0.1425 6 6 2.0081 -3.2403 1.3008 7 6 1.2495 -4.5611 1.4455 8 6 1.4028 -5.4091 0.1813 9 7 -0.1728 -4.3126 1.7374 10 6 -0.4207 -4.8630 2.9396 11 8 -1.5075 -4.8378 3.4831 12 7 0.6631 -5.4404 3.4707 13 6 0.6824 -6.1155 4.7707 14 6 1.0369 -5.1059 5.8645 15 6 1.0574 -5.8005 7.2016 16 1 0.8390 -6.8563 7.2651 17 6 1.3550 -5.0882 8.3440 18 7 1.6205 -3.8024 8.2667 19 14 1.3797 -5.9489 10.0017 20 1 2.3937 -7.0337 9.9809 21 1 1.7239 -4.9691 11.0632 22 1 0.0407 -6.5282 10.2787 23 6 1.7348 -5.3242 2.6619 24 8 2.8543 -5.7431 2.8650 25 1 -0.3634 -0.0895 1.0237 26 1 -0.3633 0.9314 -0.4344 27 1 -0.3634 -0.8418 -0.5894 28 1 2.4422 1.6197 -1.0277 29 1 1.6713 2.0648 0.5138 30 1 3.2128 1.1748 0.5140 31 1 3.2372 -1.1373 -0.1009 32 1 1.5040 -3.0083 -0.7807 33 1 0.3635 -2.2310 0.3432 34 1 3.0598 -3.4451 1.1002 35 1 1.9192 -2.6677 2.2241 36 1 2.4581 -5.6239 0.0135 37 1 0.8561 -6.3443 0.3026 38 1 1.0028 -4.8632 -0.6732 39 1 -0.8070 -3.8433 1.1730 40 1 -0.3003 -6.5410 4.9738 41 1 1.4270 -6.9114 4.7558 42 1 2.0197 -4.6803 5.6614 43 1 0.2923 -4.3100 5.8794 44 1 1.8302 -3.3013 9.0704 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153742509.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:35 Heat of formation + Delta-G solvation = -74.573939 kcal Electronic energy + Delta-G solvation = -24125.283174 eV Core-core repulsion = 20656.156055 eV Total energy + Delta-G solvation = -3469.127119 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.59862 -39.72592 -38.64427 -37.30904 -36.88241 -35.22063 -33.60715 -31.77662 -30.93497 -28.66686 -27.70986 -27.43605 -25.57853 -24.19435 -23.56299 -21.64917 -21.35774 -19.09254 -18.75181 -18.62072 -17.67517 -17.33661 -16.68273 -16.54893 -16.43491 -16.25191 -15.67096 -15.28474 -14.95984 -14.90178 -14.83087 -14.48544 -14.16541 -13.97609 -13.60735 -13.36747 -13.23943 -13.04486 -12.86911 -12.81011 -12.75298 -12.68656 -12.39432 -12.12446 -12.10503 -11.91228 -11.83028 -11.54224 -11.46327 -11.10205 -10.74322 -10.62959 -10.43743 -9.48777 -8.26864 -6.40554 0.55054 1.19751 1.33207 1.39809 1.43847 1.51641 1.96774 2.15212 2.38790 2.87793 3.07187 3.43565 3.68656 3.97300 4.03515 4.15798 4.22838 4.34331 4.39017 4.44680 4.49906 4.56674 4.63841 4.69046 4.72356 4.78667 4.81517 4.86610 4.93060 4.97243 5.05170 5.12736 5.17081 5.27838 5.29252 5.32300 5.39275 5.69148 5.80371 5.85145 6.05172 6.08993 6.11101 6.37612 6.73247 7.10947 7.29450 8.85883 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.003804 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.505064 B = 7359.229482 C = 8124.833074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C -0.120 4.120 4 C -0.175 4.175 5 C -0.083 4.083 6 C -0.103 4.103 7 C 0.135 3.865 8 C -0.141 4.141 9 N -0.696 5.696 10 C 0.697 3.303 11 O -0.582 6.582 12 N -0.581 5.581 13 C 0.133 3.867 14 C 0.026 3.974 15 C -0.548 4.548 16 H 0.072 0.928 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.282 1.282 22 H -0.264 1.264 23 C 0.516 3.484 24 O -0.496 6.496 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.450 0.550 40 H 0.086 0.914 41 H 0.090 0.910 42 H -0.011 1.011 43 H -0.013 1.013 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.276 4.430 -23.752 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C -0.177 4.177 4 C -0.193 4.193 5 C -0.120 4.120 6 C -0.142 4.142 7 C 0.045 3.955 8 C -0.198 4.198 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.459 6.459 12 N -0.325 5.325 13 C 0.012 3.988 14 C -0.012 4.012 15 C -0.586 4.586 16 H 0.090 0.910 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.207 1.207 22 H -0.189 1.189 23 C 0.305 3.695 24 O -0.367 6.367 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.065 0.935 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.298 0.702 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.007 0.993 43 H 0.006 0.994 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.187 4.307 -23.174 23.572 hybrid contribution -0.098 0.198 1.314 1.332 sum -0.285 4.505 -21.860 22.321 Atomic orbital electron populations 1.20936 0.91943 1.03255 1.01922 1.21873 0.96487 0.95539 1.00448 1.20863 0.99534 0.94782 1.02487 1.22672 0.99917 0.93761 1.02988 1.20717 0.99502 0.93918 0.97848 1.21708 1.00644 0.91615 1.00230 1.21605 0.81576 0.97650 0.94711 1.22086 1.05069 0.99134 0.93556 1.45504 1.11893 1.59936 1.18920 1.16083 0.83257 0.78463 0.82418 1.90964 1.24893 1.64110 1.65913 1.46722 1.12003 1.52756 1.21026 1.21736 1.03156 0.95409 0.78474 1.19157 0.94383 0.94192 0.93457 1.21447 1.48465 0.96467 0.92221 0.91015 1.26061 0.94148 0.95540 1.03982 1.70116 1.47754 1.08876 1.30460 0.85353 0.79308 0.78198 0.77308 1.18708 1.20694 1.18893 1.21594 0.83893 0.78553 0.85495 1.90743 1.19841 1.48870 1.77273 0.92436 0.91290 0.90245 0.90602 0.91742 0.92260 0.87008 0.87708 0.90430 0.88452 0.93459 0.88947 0.91619 0.86605 0.70170 0.89549 0.89133 0.99274 0.99426 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.90 71.23 0.63 -1.11 16 2 C -0.14 -2.30 6.05 -16.49 -0.10 -2.40 16 3 C -0.12 -1.72 10.00 71.23 0.71 -1.01 16 4 C -0.18 -2.74 9.10 25.65 0.23 -2.51 16 5 C -0.08 -1.11 4.82 29.85 0.14 -0.96 16 6 C -0.10 -2.07 4.54 30.59 0.14 -1.93 16 7 C 0.13 2.99 1.01 2.98 0.00 2.99 16 8 C -0.14 -1.93 8.68 71.98 0.62 -1.30 16 9 N -0.70 -16.40 5.52 -439.83 -2.43 -18.82 16 10 C 0.70 25.29 8.62 179.44 1.55 26.84 16 11 O -0.58 -25.71 17.48 -3.84 -0.07 -25.78 16 12 N -0.58 -22.77 2.60 -773.11 -2.01 -24.78 16 13 C 0.13 6.05 5.64 86.38 0.49 6.54 16 14 C 0.03 1.48 5.30 29.85 0.16 1.64 16 15 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 16 H 0.07 3.95 7.74 -2.91 -0.02 3.92 16 17 C 0.00 0.06 5.46 84.65 0.46 0.52 16 18 N -0.93 -58.80 13.29 21.45 0.28 -58.51 16 19 Si 0.98 45.25 29.54 68.60 2.03 47.28 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.52 17.75 6.98 87.94 0.61 18.36 16 24 O -0.50 -19.69 17.76 -2.90 -0.05 -19.74 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 0.84 8.09 -2.38 -0.02 0.82 16 27 H 0.08 0.88 6.71 -2.39 -0.02 0.86 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.90 8.12 -2.38 -0.02 0.88 16 30 H 0.06 0.88 8.06 -2.39 -0.02 0.86 16 31 H 0.11 1.68 8.05 -2.91 -0.02 1.66 16 32 H 0.10 0.83 6.57 -2.38 -0.02 0.82 16 33 H 0.08 0.98 4.83 -2.39 -0.01 0.97 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.12 0.77 6.59 -2.39 -0.02 0.75 16 39 H 0.45 7.40 8.23 -92.70 -0.76 6.64 16 40 H 0.09 3.87 7.86 -2.39 -0.02 3.85 16 41 H 0.09 3.93 8.00 -2.39 -0.02 3.91 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -78.30 364.01 3.88 -74.42 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.23 Total: 12.37 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 5.89 Total: 13.57 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.15 Total: -102.12 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -0.12 Total: -45.52 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -78.30 3.88 -74.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153742509.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.155 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds