Wall clock time and date at job start Tue Mar 31 2020 06:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30620 * 125.42250 * 2 1 4 4 C 1.33687 * 108.99788 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.27479 * 180.02562 * 4 3 2 6 6 C 1.36343 * 107.45250 * 359.97438 * 4 3 2 7 7 C 1.46723 * 126.64437 * 179.97438 * 6 4 3 8 8 O 1.21681 * 120.00294 * 5.77671 * 7 6 4 9 9 N 1.34775 * 119.99747 * 185.77502 * 7 6 4 10 10 C 1.46499 * 120.00495 * 5.22861 * 9 7 6 11 11 C 1.50699 * 109.47140 * 275.23132 * 10 9 7 12 12 H 1.07997 * 119.99737 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99820 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00275 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99782 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46955 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47049 * 119.99845 * 15 13 11 18 18 H 1.48502 * 109.46772 * 239.99698 * 15 13 11 19 19 C 1.46504 * 120.00043 * 184.95239 * 9 7 6 20 20 C 1.52998 * 109.47303 * 270.27751 * 19 9 7 21 21 C 1.53003 * 109.46844 * 179.97438 * 20 19 9 22 22 C 1.52993 * 109.47236 * 65.00261 * 21 20 19 23 23 C 1.53005 * 109.46429 * 184.99878 * 21 20 19 24 24 O 1.33668 * 125.42392 * 180.27999 * 2 1 3 25 25 H 1.09007 * 109.46712 * 90.02952 * 1 2 3 26 26 H 1.09007 * 109.47328 * 210.02383 * 1 2 3 27 27 H 1.08996 * 109.47471 * 330.03204 * 1 2 3 28 28 H 1.08998 * 109.46676 * 269.97001 * 5 4 3 29 29 H 1.08992 * 109.47161 * 29.97156 * 5 4 3 30 30 H 1.09002 * 109.47085 * 149.97828 * 5 4 3 31 31 H 1.09005 * 109.47092 * 35.23045 * 10 9 7 32 32 H 1.08995 * 109.47433 * 155.22807 * 10 9 7 33 33 H 0.97000 * 120.00232 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.46596 * 30.27512 * 19 9 7 35 35 H 1.09001 * 109.47030 * 150.27157 * 19 9 7 36 36 H 1.09002 * 109.47099 * 299.99452 * 20 19 9 37 37 H 1.08997 * 109.47078 * 59.99854 * 20 19 9 38 38 H 1.08995 * 109.47179 * 304.99446 * 21 20 19 39 39 H 1.09008 * 109.47001 * 299.99936 * 22 21 20 40 40 H 1.09003 * 109.47065 * 59.99530 * 22 21 20 41 41 H 1.09003 * 109.47281 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47212 * 60.00743 * 23 21 20 43 43 H 1.09003 * 109.46500 * 180.02562 * 23 21 20 44 44 H 1.09001 * 109.47518 * 299.99654 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0644 0.0000 4 6 3.5464 0.6864 0.0006 5 6 4.7451 1.5996 0.0013 6 6 3.5708 -0.6768 0.0015 7 6 4.7636 -1.5312 0.0019 8 8 5.8688 -1.0332 0.1073 9 7 4.6350 -2.8678 -0.1146 10 6 3.3165 -3.4587 -0.3564 11 6 2.6009 -3.6445 0.9568 12 1 3.0805 -3.3521 1.8792 13 6 1.3339 -4.1878 0.9806 14 7 0.7496 -4.5433 -0.1427 15 14 0.4465 -4.4174 2.6083 16 1 1.3134 -3.9412 3.7161 17 1 -0.8171 -3.6375 2.5976 18 1 0.1383 -5.8567 2.8052 19 6 5.8149 -3.7294 -0.0056 20 6 6.4373 -3.9197 -1.3902 21 6 7.6698 -4.8190 -1.2761 22 6 7.2407 -6.2180 -0.8296 23 6 8.3635 -4.9084 -2.6369 24 8 2.2817 -1.0892 -0.0053 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5133 28 1 5.0349 1.8195 -1.0262 29 1 4.4944 2.5278 0.5147 30 1 5.5731 1.1119 0.5158 31 1 2.7337 -2.7969 -0.9973 32 1 3.4356 -4.4255 -0.8452 33 1 -0.1419 -4.9252 -0.1260 34 1 6.5432 -3.2655 0.6596 35 1 5.5209 -4.6988 0.3970 36 1 5.7089 -4.3836 -2.0553 37 1 6.7313 -2.9503 -1.7927 38 1 8.3593 -4.3993 -0.5436 39 1 6.7464 -6.1543 0.1399 40 1 6.5512 -6.6377 -1.5621 41 1 8.1188 -6.8589 -0.7487 42 1 8.6693 -3.9117 -2.9550 43 1 9.2414 -5.5495 -2.5557 44 1 7.6741 -5.3281 -3.3694 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172772015.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:28 Heat of formation + Delta-G solvation = -53.121974 kcal Electronic energy + Delta-G solvation = -24900.862412 eV Core-core repulsion = 21432.665520 eV Total energy + Delta-G solvation = -3468.196892 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.31726 -40.73960 -37.96421 -36.74537 -35.84239 -34.50544 -33.66370 -30.94388 -30.18664 -29.15188 -28.03379 -27.87478 -25.04311 -24.71400 -22.70513 -22.40853 -20.91060 -20.69126 -18.76818 -18.30894 -17.74620 -17.32717 -16.82868 -16.41875 -16.15519 -15.71424 -15.23417 -15.08469 -14.69022 -14.39401 -14.31418 -14.16246 -14.04369 -13.83534 -13.66814 -13.46602 -13.35737 -13.15654 -13.04479 -12.90382 -12.71494 -12.66449 -12.31238 -12.13432 -11.90611 -11.89824 -11.75345 -11.63209 -11.56075 -11.42117 -11.03959 -10.57837 -9.87813 -9.43704 -8.18353 -6.30239 -0.09590 1.35820 1.39077 1.41259 1.49902 1.63126 2.08741 2.23245 2.42719 2.99370 3.12325 3.61383 3.77865 3.91157 3.96144 4.06853 4.25670 4.39120 4.48919 4.54311 4.59193 4.64209 4.68492 4.71482 4.75493 4.79869 4.83134 4.84457 4.92976 4.98663 5.04097 5.07871 5.12667 5.14499 5.22907 5.31712 5.42016 5.47524 5.51928 5.62056 5.76072 6.04256 6.33562 6.62910 6.77692 7.06438 7.38302 8.88600 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.006696 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.964652 B = 4180.863838 C = 6117.463831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.199 3.801 3 N -0.510 5.510 4 C 0.058 3.942 5 C -0.068 4.068 6 C -0.134 4.134 7 C 0.598 3.402 8 O -0.557 6.557 9 N -0.589 5.589 10 C 0.257 3.743 11 C -0.530 4.530 12 H 0.040 0.960 13 C 0.034 3.966 14 N -0.913 5.913 15 Si 0.943 3.057 16 H -0.280 1.280 17 H -0.268 1.268 18 H -0.277 1.277 19 C 0.119 3.881 20 C -0.117 4.117 21 C -0.089 4.089 22 C -0.148 4.148 23 C -0.142 4.142 24 O -0.152 6.152 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.024 0.976 32 H 0.026 0.974 33 H 0.268 0.732 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.720 3.197 -2.288 6.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.005 4.005 3 N -0.242 5.242 4 C -0.068 4.068 5 C -0.125 4.125 6 C -0.190 4.190 7 C 0.386 3.614 8 O -0.440 6.440 9 N -0.317 5.317 10 C 0.136 3.864 11 C -0.568 4.568 12 H 0.058 0.942 13 C -0.166 4.166 14 N -0.552 5.552 15 Si 0.769 3.231 16 H -0.206 1.206 17 H -0.193 1.193 18 H -0.202 1.202 19 C -0.003 4.003 20 C -0.156 4.156 21 C -0.108 4.108 22 C -0.205 4.205 23 C -0.199 4.199 24 O -0.036 6.036 25 H 0.131 0.869 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.831 3.833 -2.315 7.352 hybrid contribution -0.636 -1.058 0.768 1.454 sum 5.195 2.775 -1.548 6.090 Atomic orbital electron populations 1.20529 0.78717 1.05931 1.06189 1.27497 0.98467 0.78971 0.95605 1.70295 1.01383 1.30335 1.22154 1.22471 0.94486 0.91207 0.98586 1.20339 0.90979 0.97151 1.04052 1.22963 0.83621 0.95172 1.17215 1.16583 0.85473 0.82105 0.77246 1.90696 1.24562 1.74347 1.54385 1.48219 1.10904 1.05080 1.67544 1.19155 0.77720 0.93174 0.96335 1.21392 1.01129 1.41782 0.92520 0.94151 1.25418 0.97404 0.94731 0.99088 1.70004 1.15426 1.42539 1.27207 0.85742 0.78907 0.78187 0.80288 1.20554 1.19308 1.20239 1.21627 0.86167 0.94200 0.98318 1.21902 0.97717 0.99804 0.96175 1.21031 0.95513 0.95487 0.98744 1.21894 1.01622 0.95958 1.01074 1.21795 1.00474 1.01874 0.95753 1.85094 1.15669 1.35747 1.67094 0.86909 0.89565 0.85781 0.89322 0.89020 0.89737 0.95858 0.95595 0.92284 0.90821 0.89963 0.92746 0.92909 0.90704 0.93118 0.93107 0.91064 0.92887 0.91095 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.56 10.51 71.23 0.75 -0.81 16 2 C 0.20 7.66 8.32 88.29 0.73 8.40 16 3 N -0.51 -19.59 11.26 -291.06 -3.28 -22.86 16 4 C 0.06 2.28 7.16 41.83 0.30 2.58 16 5 C -0.07 -2.14 9.94 71.24 0.71 -1.43 16 6 C -0.13 -6.00 6.67 24.05 0.16 -5.84 16 7 C 0.60 26.98 7.59 86.46 0.66 27.64 16 8 O -0.56 -24.77 14.41 -4.29 -0.06 -24.83 16 9 N -0.59 -26.15 2.47 -830.82 -2.05 -28.20 16 10 C 0.26 12.76 4.75 85.63 0.41 13.17 16 11 C -0.53 -28.04 7.81 25.60 0.20 -27.84 16 12 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16 13 C 0.03 1.79 5.46 84.66 0.46 2.25 16 14 N -0.91 -49.05 13.29 21.45 0.28 -48.76 16 15 Si 0.94 41.39 29.54 68.60 2.03 43.41 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 C 0.12 4.38 5.09 86.38 0.44 4.82 16 20 C -0.12 -3.71 5.01 30.59 0.15 -3.56 16 21 C -0.09 -2.17 2.92 -10.79 -0.03 -2.20 16 22 C -0.15 -3.44 8.95 71.98 0.64 -2.80 16 23 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 24 O -0.15 -6.97 6.59 -7.16 -0.05 -7.01 16 25 H 0.11 2.63 8.14 -2.38 -0.02 2.61 16 26 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 27 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.08 2.82 6.37 -2.39 -0.02 2.80 16 31 H 0.02 1.26 5.95 -2.38 -0.01 1.25 16 32 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 33 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.07 2.68 7.50 -2.39 -0.02 2.67 16 35 H 0.08 3.00 6.50 -2.39 -0.02 2.98 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.26 6.57 -2.38 -0.02 1.25 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -62.60 361.11 4.09 -58.51 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.98 Total: 17.66 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.24 Total: 12.10 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -5.04 Total: -99.83 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.11 Total: -31.85 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -62.60 4.09 -58.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172772015.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.384 kcal (2) G-P(sol) polarization free energy of solvation -62.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds