Wall clock time and date at job start Tue Mar 31 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30623 * 125.41670 * 2 1 4 4 C 1.33692 * 108.98884 * 180.02562 * 3 2 1 5 5 C 1.50709 * 126.26911 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45942 * 0.02562 * 4 3 2 7 7 C 1.46724 * 126.64785 * 179.97438 * 6 4 3 8 8 O 1.21680 * 119.99639 * 352.71251 * 7 6 4 9 9 N 1.34775 * 119.99755 * 172.70846 * 7 6 4 10 10 C 1.46499 * 119.99396 * 183.76243 * 9 7 6 11 11 C 1.50698 * 109.47081 * 269.72298 * 10 9 7 12 12 H 1.08000 * 119.99916 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00059 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99873 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47001 * 59.99997 * 15 13 11 17 17 H 1.48497 * 109.46937 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46914 * 299.99965 * 15 13 11 19 19 C 1.46493 * 120.00487 * 3.48733 * 9 7 6 20 20 C 1.53004 * 109.47168 * 268.06647 * 19 9 7 21 21 C 1.53001 * 109.47426 * 58.95986 * 20 19 9 22 22 C 1.53006 * 109.46835 * 178.95936 * 20 19 9 23 23 C 1.53001 * 109.46804 * 298.95868 * 20 19 9 24 24 O 1.33662 * 125.42686 * 180.29663 * 2 1 3 25 25 H 1.08998 * 109.47599 * 90.02499 * 1 2 3 26 26 H 1.09007 * 109.46869 * 210.01980 * 1 2 3 27 27 H 1.08997 * 109.47594 * 330.01319 * 1 2 3 28 28 H 1.08997 * 109.47470 * 269.97816 * 5 4 3 29 29 H 1.08999 * 109.47177 * 29.98349 * 5 4 3 30 30 H 1.09003 * 109.46850 * 149.98093 * 5 4 3 31 31 H 1.09000 * 109.47523 * 29.72734 * 10 9 7 32 32 H 1.09006 * 109.47300 * 149.72549 * 10 9 7 33 33 H 0.96999 * 119.99493 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47007 * 28.06503 * 19 9 7 35 35 H 1.09000 * 109.47673 * 148.05999 * 19 9 7 36 36 H 1.09001 * 109.47135 * 68.38798 * 21 20 19 37 37 H 1.08995 * 109.47192 * 188.39188 * 21 20 19 38 38 H 1.09004 * 109.46441 * 308.39142 * 21 20 19 39 39 H 1.08998 * 109.46803 * 60.00066 * 22 20 19 40 40 H 1.09005 * 109.46630 * 179.97438 * 22 20 19 41 41 H 1.08992 * 109.47211 * 299.99634 * 22 20 19 42 42 H 1.08993 * 109.47176 * 59.99886 * 23 20 19 43 43 H 1.08996 * 109.46976 * 180.02562 * 23 20 19 44 44 H 1.09004 * 109.47230 * 299.99739 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5463 0.6864 -0.0006 5 6 4.7451 1.5998 -0.0002 6 6 3.5708 -0.6767 -0.0015 7 6 4.7636 -1.5312 -0.0029 8 8 5.8668 -1.0356 -0.1370 9 7 4.6372 -2.8649 0.1444 10 6 5.8317 -3.7092 0.2258 11 6 6.2241 -4.1590 -1.1580 12 1 5.6422 -3.8468 -2.0125 13 6 7.3261 -4.9690 -1.3330 14 7 8.0344 -5.3496 -0.2922 15 14 7.8129 -5.5260 -3.0483 16 1 8.1036 -4.3381 -3.8905 17 1 9.0229 -6.3829 -2.9656 18 1 6.6988 -6.3004 -3.6521 19 6 3.3057 -3.4697 0.2292 20 6 2.8826 -3.5679 1.6964 21 6 2.8719 -2.1702 2.3188 22 6 1.4812 -4.1756 1.7834 23 6 3.8717 -4.4560 2.4539 24 8 2.2818 -1.0891 -0.0056 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8899 0.5142 27 1 -0.3634 0.8900 0.5136 28 1 5.0341 1.8204 -1.0278 29 1 4.4948 2.5276 0.5140 30 1 5.5735 1.1118 0.5134 31 1 6.6494 -3.1403 0.6684 32 1 5.6191 -4.5810 0.8445 33 1 8.8094 -5.9198 -0.4154 34 1 2.5908 -2.8520 -0.3145 35 1 3.3310 -4.4673 -0.2092 36 1 2.0654 -1.5831 1.8796 37 1 2.7173 -2.2527 3.3945 38 1 3.8257 -1.6792 2.1254 39 1 1.4888 -5.1713 1.3400 40 1 1.1800 -4.2460 2.8286 41 1 0.7766 -3.5430 1.2437 42 1 4.8700 -4.0231 2.3918 43 1 3.5701 -4.5263 3.4989 44 1 3.8793 -5.4518 2.0105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174232084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:32 Heat of formation + Delta-G solvation = -16.396062 kcal Electronic energy + Delta-G solvation = -25707.684397 eV Core-core repulsion = 22241.080060 eV Total energy + Delta-G solvation = -3466.604337 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.34985 -39.32622 -37.21565 -35.09496 -33.96291 -32.71202 -32.32877 -29.29102 -28.53322 -27.24285 -26.84623 -26.68538 -25.40856 -23.13454 -21.70022 -21.18738 -19.58185 -18.82618 -17.11587 -16.68353 -16.37605 -15.75998 -15.56425 -14.79800 -14.41268 -14.26399 -13.99039 -13.79138 -13.54586 -13.23108 -13.04869 -12.91765 -12.69026 -12.62187 -12.35739 -12.14024 -11.95336 -11.89316 -11.42324 -11.36740 -11.19795 -11.02112 -10.84067 -10.76020 -10.60883 -10.58967 -10.37026 -10.21447 -10.05532 -9.63690 -9.32006 -8.54512 -8.44342 -7.71441 -6.07261 -4.11827 1.13977 2.57486 2.64802 3.30795 3.35173 3.38431 3.68513 3.76561 4.03736 4.42970 4.82844 4.92082 5.02693 5.04469 5.17464 5.19812 5.26219 5.27254 5.36159 5.60526 5.71084 5.72270 5.78603 5.82003 5.87911 5.95297 5.98295 6.05384 6.09849 6.12281 6.21144 6.22394 6.40886 6.46511 6.53958 6.58085 6.72067 7.00350 7.33306 7.43824 7.74993 7.88377 8.18488 8.25336 8.74812 8.94302 9.52818 11.00591 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.005808 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.872135 B = 4819.886608 C = 5702.789402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.187 3.813 3 N -0.488 5.488 4 C 0.056 3.944 5 C -0.074 4.074 6 C -0.087 4.087 7 C 0.590 3.410 8 O -0.513 6.513 9 N -0.577 5.577 10 C 0.242 3.758 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.064 3.936 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.112 3.888 20 C -0.082 4.082 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.144 4.144 24 O -0.175 6.175 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.999 6.521 4.245 17.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.219 5.219 4 C -0.068 4.068 5 C -0.132 4.132 6 C -0.142 4.142 7 C 0.375 3.625 8 O -0.391 6.391 9 N -0.306 5.306 10 C 0.124 3.876 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.203 1.203 19 C -0.012 4.012 20 C -0.084 4.084 21 C -0.200 4.200 22 C -0.192 4.192 23 C -0.201 4.201 24 O -0.062 6.062 25 H 0.111 0.889 26 H 0.107 0.893 27 H 0.118 0.882 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.476 7.163 4.228 17.569 hybrid contribution 0.458 -1.103 -0.976 1.542 sum -15.018 6.061 3.252 16.518 Atomic orbital electron populations 1.20280 0.81567 1.05046 1.04651 1.26419 0.96635 0.79720 0.99006 1.70247 1.01734 1.30179 1.19718 1.21928 0.93197 0.91465 1.00162 1.20286 0.92408 0.96993 1.03470 1.23461 0.82460 0.95264 1.12967 1.16506 0.85022 0.82066 0.78879 1.90840 1.24060 1.73400 1.50843 1.48135 1.08761 1.05412 1.68315 1.19547 0.80952 0.89368 0.97738 1.21379 1.12110 1.30283 0.92935 0.92512 1.24901 0.95873 0.95971 0.97125 1.69915 1.18166 1.35748 1.29434 0.86565 0.77884 0.78608 0.84422 1.20159 1.21139 1.20272 1.21858 0.84213 0.99928 0.95159 1.20906 0.95593 0.95696 0.96155 1.22132 1.01701 0.96399 0.99802 1.21772 0.95455 1.00582 1.01376 1.22011 0.99938 0.99514 0.98632 1.84830 1.16536 1.35725 1.69110 0.88926 0.89282 0.88247 0.90340 0.91109 0.88891 0.93855 0.93481 0.92617 0.90050 0.89697 0.92630 0.93239 0.92774 0.92484 0.92795 0.92930 0.91211 0.93556 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.19 2.49 7.80 -12.79 -0.10 2.39 16 3 N -0.49 -7.60 11.26 -7.07 -0.08 -7.68 16 4 C 0.06 0.96 7.16 -82.46 -0.59 0.37 16 5 C -0.07 -1.14 9.80 36.01 0.35 -0.79 16 6 C -0.09 -1.57 5.03 -36.84 -0.19 -1.75 16 7 C 0.59 12.76 6.27 -12.83 -0.08 12.68 16 8 O -0.51 -12.67 14.51 5.21 0.08 -12.59 16 9 N -0.58 -12.29 1.99 -176.59 -0.35 -12.64 16 10 C 0.24 6.14 4.07 -5.19 -0.02 6.12 16 11 C -0.53 -14.76 9.39 -34.44 -0.32 -15.09 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.11 1.93 4.47 -4.04 -0.02 1.91 16 20 C -0.08 -1.20 0.84 -154.50 -0.13 -1.33 16 21 C -0.14 -2.10 6.88 37.16 0.26 -1.85 16 22 C -0.13 -1.53 8.47 37.16 0.31 -1.22 16 23 C -0.14 -2.26 7.21 37.16 0.27 -1.99 16 24 O -0.17 -2.66 4.84 4.43 0.02 -2.64 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.55 6.65 -51.93 -0.35 1.20 16 31 H 0.04 1.24 7.47 -51.93 -0.39 0.85 16 32 H 0.05 1.18 5.78 -51.93 -0.30 0.88 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.08 1.32 4.90 -51.93 -0.25 1.07 16 35 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 36 H 0.05 0.77 5.30 -51.93 -0.28 0.49 16 37 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.05 0.94 5.34 -51.93 -0.28 0.66 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.29 5.80 -51.93 -0.30 0.99 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 LS Contribution 345.04 15.07 5.20 5.20 Total: -1.00 -32.09 345.04 -6.15 -38.24 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.75 Total: -0.38 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 0.02 Total: 1.08 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.31 Total: -45.60 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.10 Total: -15.24 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.09 -6.15 -38.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174232084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.843 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds