Wall clock time and date at job start Tue Mar 31 2020 06:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30623 * 125.41670 * 2 1 4 4 C 1.33692 * 108.98884 * 180.02562 * 3 2 1 5 5 C 1.50709 * 126.26911 * 180.02562 * 4 3 2 6 6 C 1.36340 * 107.45942 * 0.02562 * 4 3 2 7 7 C 1.46724 * 126.64785 * 179.97438 * 6 4 3 8 8 O 1.21680 * 119.99639 * 352.71251 * 7 6 4 9 9 N 1.34775 * 119.99755 * 172.70846 * 7 6 4 10 10 C 1.46499 * 119.99396 * 183.76243 * 9 7 6 11 11 C 1.50698 * 109.47081 * 269.72298 * 10 9 7 12 12 H 1.08000 * 119.99916 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00059 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99873 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00079 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47001 * 59.99997 * 15 13 11 17 17 H 1.48497 * 109.46937 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46914 * 299.99965 * 15 13 11 19 19 C 1.46493 * 120.00487 * 3.48733 * 9 7 6 20 20 C 1.53004 * 109.47168 * 268.06647 * 19 9 7 21 21 C 1.53001 * 109.47426 * 58.95986 * 20 19 9 22 22 C 1.53006 * 109.46835 * 178.95936 * 20 19 9 23 23 C 1.53001 * 109.46804 * 298.95868 * 20 19 9 24 24 O 1.33662 * 125.42686 * 180.29663 * 2 1 3 25 25 H 1.08998 * 109.47599 * 90.02499 * 1 2 3 26 26 H 1.09007 * 109.46869 * 210.01980 * 1 2 3 27 27 H 1.08997 * 109.47594 * 330.01319 * 1 2 3 28 28 H 1.08997 * 109.47470 * 269.97816 * 5 4 3 29 29 H 1.08999 * 109.47177 * 29.98349 * 5 4 3 30 30 H 1.09003 * 109.46850 * 149.98093 * 5 4 3 31 31 H 1.09000 * 109.47523 * 29.72734 * 10 9 7 32 32 H 1.09006 * 109.47300 * 149.72549 * 10 9 7 33 33 H 0.96999 * 119.99493 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47007 * 28.06503 * 19 9 7 35 35 H 1.09000 * 109.47673 * 148.05999 * 19 9 7 36 36 H 1.09001 * 109.47135 * 68.38798 * 21 20 19 37 37 H 1.08995 * 109.47192 * 188.39188 * 21 20 19 38 38 H 1.09004 * 109.46441 * 308.39142 * 21 20 19 39 39 H 1.08998 * 109.46803 * 60.00066 * 22 20 19 40 40 H 1.09005 * 109.46630 * 179.97438 * 22 20 19 41 41 H 1.08992 * 109.47211 * 299.99634 * 22 20 19 42 42 H 1.08993 * 109.47176 * 59.99886 * 23 20 19 43 43 H 1.08996 * 109.46976 * 180.02562 * 23 20 19 44 44 H 1.09004 * 109.47230 * 299.99739 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2640 1.0645 0.0000 4 6 3.5463 0.6864 -0.0006 5 6 4.7451 1.5998 -0.0002 6 6 3.5708 -0.6767 -0.0015 7 6 4.7636 -1.5312 -0.0029 8 8 5.8668 -1.0356 -0.1370 9 7 4.6372 -2.8649 0.1444 10 6 5.8317 -3.7092 0.2258 11 6 6.2241 -4.1590 -1.1580 12 1 5.6422 -3.8468 -2.0125 13 6 7.3261 -4.9690 -1.3330 14 7 8.0344 -5.3496 -0.2922 15 14 7.8129 -5.5260 -3.0483 16 1 8.1036 -4.3381 -3.8905 17 1 9.0229 -6.3829 -2.9656 18 1 6.6988 -6.3004 -3.6521 19 6 3.3057 -3.4697 0.2292 20 6 2.8826 -3.5679 1.6964 21 6 2.8719 -2.1702 2.3188 22 6 1.4812 -4.1756 1.7834 23 6 3.8717 -4.4560 2.4539 24 8 2.2818 -1.0891 -0.0056 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8899 0.5142 27 1 -0.3634 0.8900 0.5136 28 1 5.0341 1.8204 -1.0278 29 1 4.4948 2.5276 0.5140 30 1 5.5735 1.1118 0.5134 31 1 6.6494 -3.1403 0.6684 32 1 5.6191 -4.5810 0.8445 33 1 8.8094 -5.9198 -0.4154 34 1 2.5908 -2.8520 -0.3145 35 1 3.3310 -4.4673 -0.2092 36 1 2.0654 -1.5831 1.8796 37 1 2.7173 -2.2527 3.3945 38 1 3.8257 -1.6792 2.1254 39 1 1.4888 -5.1713 1.3400 40 1 1.1800 -4.2460 2.8286 41 1 0.7766 -3.5430 1.2437 42 1 4.8700 -4.0231 2.3918 43 1 3.5701 -4.5263 3.4989 44 1 3.8793 -5.4518 2.0105 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174232084.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:31 Heat of formation + Delta-G solvation = -37.966505 kcal Electronic energy + Delta-G solvation = -25708.619762 eV Core-core repulsion = 22241.080060 eV Total energy + Delta-G solvation = -3467.539701 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.57791 -40.91614 -38.66312 -36.31918 -35.74638 -34.39529 -33.68464 -30.38605 -30.17686 -28.57835 -28.12364 -27.90709 -26.95456 -24.96957 -22.82558 -22.59761 -21.07897 -20.09573 -18.80273 -18.26763 -17.96177 -17.32992 -16.97050 -16.48274 -16.10469 -15.42320 -15.25495 -15.11890 -14.85126 -14.41605 -14.35503 -14.21470 -13.96270 -13.80911 -13.58607 -13.43465 -13.26208 -13.09388 -13.01984 -12.85532 -12.63809 -12.54540 -12.51556 -12.18412 -12.11575 -11.91601 -11.80573 -11.74327 -11.56783 -11.36235 -11.01694 -10.62715 -9.89075 -9.41590 -8.23359 -6.37701 -0.16672 1.33532 1.36182 1.39425 1.41975 1.47092 2.09292 2.22352 2.41748 2.95349 3.06307 3.55068 3.68628 3.82402 3.84461 4.04496 4.24865 4.39237 4.47436 4.53961 4.63526 4.64581 4.68721 4.69229 4.73789 4.81156 4.87384 4.88498 4.94469 5.00441 5.02741 5.06147 5.14368 5.17614 5.21041 5.31192 5.37782 5.40473 5.51681 5.55365 5.77907 6.04235 6.44735 6.64469 6.68896 7.11060 7.33561 8.83205 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.005808 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.872135 B = 4819.886608 C = 5702.789402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.215 3.785 3 N -0.509 5.509 4 C 0.063 3.937 5 C -0.074 4.074 6 C -0.115 4.115 7 C 0.586 3.414 8 O -0.562 6.562 9 N -0.581 5.581 10 C 0.263 3.737 11 C -0.547 4.547 12 H 0.048 0.952 13 C 0.014 3.986 14 N -0.924 5.924 15 Si 0.964 3.036 16 H -0.279 1.279 17 H -0.276 1.276 18 H -0.262 1.262 19 C 0.109 3.891 20 C -0.077 4.077 21 C -0.135 4.135 22 C -0.127 4.127 23 C -0.141 4.141 24 O -0.174 6.174 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.071 0.929 31 H -0.002 1.002 32 H 0.045 0.955 33 H 0.268 0.732 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.018 0.982 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.069 0.931 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.639 6.622 3.844 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.010 3.990 3 N -0.239 5.239 4 C -0.061 4.061 5 C -0.131 4.131 6 C -0.170 4.170 7 C 0.374 3.626 8 O -0.444 6.444 9 N -0.309 5.309 10 C 0.142 3.858 11 C -0.585 4.585 12 H 0.066 0.934 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.788 3.212 16 H -0.205 1.205 17 H -0.201 1.201 18 H -0.186 1.186 19 C -0.013 4.013 20 C -0.078 4.078 21 C -0.192 4.192 22 C -0.185 4.185 23 C -0.198 4.198 24 O -0.063 6.063 25 H 0.134 0.866 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.016 0.984 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.088 0.912 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.164 7.260 3.836 20.849 hybrid contribution 1.471 -1.053 -0.807 1.981 sum -17.693 6.207 3.030 18.994 Atomic orbital electron populations 1.20753 0.76981 1.07295 1.06748 1.27779 0.98465 0.78451 0.94305 1.70343 1.00931 1.30985 1.21674 1.22202 0.94394 0.91235 0.98268 1.20293 0.91478 0.97592 1.03755 1.22542 0.82594 0.94771 1.17055 1.16863 0.85832 0.82165 0.77746 1.90791 1.26318 1.74308 1.52972 1.48055 1.09166 1.05388 1.68332 1.18997 0.81561 0.88915 0.96291 1.21646 1.12621 1.30652 0.93628 0.93351 1.25762 0.95664 0.95905 1.01210 1.70029 1.18546 1.36183 1.31556 0.85531 0.78194 0.78116 0.79361 1.20515 1.20085 1.18636 1.22108 0.82326 0.99333 0.97532 1.20893 0.97370 0.95800 0.93739 1.22050 1.00230 0.96065 1.00869 1.21730 0.92970 1.00799 1.02975 1.21962 0.98388 0.99119 1.00369 1.84770 1.15439 1.36439 1.69629 0.86619 0.86575 0.86402 0.89914 0.88630 0.91012 0.98380 0.93699 0.92312 0.88548 0.90561 0.91360 0.91686 0.96260 0.92158 0.91043 0.90940 0.95071 0.91235 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 10.51 71.23 0.75 0.14 16 2 C 0.21 5.00 7.80 88.29 0.69 5.68 16 3 N -0.51 -14.76 11.26 -291.05 -3.28 -18.04 16 4 C 0.06 2.12 7.16 41.84 0.30 2.42 16 5 C -0.07 -2.31 9.80 71.24 0.70 -1.61 16 6 C -0.11 -4.20 5.03 24.05 0.12 -4.08 16 7 C 0.59 26.79 6.27 86.46 0.54 27.33 16 8 O -0.56 -29.94 14.51 -4.29 -0.06 -30.01 16 9 N -0.58 -26.07 1.99 -830.84 -1.65 -27.73 16 10 C 0.26 14.24 4.07 85.63 0.35 14.58 16 11 C -0.55 -31.91 9.39 25.60 0.24 -31.66 16 12 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 13 C 0.01 0.82 5.46 84.66 0.46 1.28 16 14 N -0.92 -55.56 13.29 21.45 0.28 -55.27 16 15 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 19 C 0.11 3.77 4.47 86.38 0.39 4.15 16 20 C -0.08 -2.16 0.84 -52.18 -0.04 -2.20 16 21 C -0.14 -3.80 6.88 71.98 0.50 -3.30 16 22 C -0.13 -2.46 8.47 71.98 0.61 -1.85 16 23 C -0.14 -4.48 7.21 71.98 0.52 -3.96 16 24 O -0.17 -4.98 4.84 -7.08 -0.03 -5.02 16 25 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.12 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.56 6.65 -2.39 -0.02 2.54 16 31 H 0.00 -0.12 7.47 -2.39 -0.02 -0.14 16 32 H 0.05 2.42 5.78 -2.38 -0.01 2.41 16 33 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.10 3.02 4.90 -2.42 -0.01 3.01 16 35 H 0.08 2.73 8.09 -2.39 -0.02 2.71 16 36 H 0.07 1.71 5.30 -2.39 -0.01 1.69 16 37 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 38 H 0.02 0.67 5.34 -2.39 -0.01 0.65 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.03 1.21 5.80 -2.39 -0.01 1.20 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.05 1.69 8.10 -2.38 -0.02 1.67 16 Total: -1.00 -74.56 345.04 4.40 -70.16 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.00 Total: 11.76 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.12 Total: 6.91 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.64 Total: -101.04 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.10 Total: -35.02 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -74.56 4.40 -70.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174232084.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.193 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds