Wall clock time and date at job start Tue Mar 31 2020 07:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 C 1.52999 * 109.46887 * 239.99989 * 2 1 3 5 5 C 1.50695 * 109.47353 * 60.00180 * 4 2 1 6 6 H 1.08002 * 119.99824 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00127 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99846 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99843 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46976 * 90.00661 * 9 7 5 11 11 H 1.48498 * 109.46905 * 210.00134 * 9 7 5 12 12 H 1.48501 * 109.47413 * 330.00151 * 9 7 5 13 13 C 1.53001 * 109.47113 * 119.99999 * 2 1 3 14 14 N 1.46898 * 109.47126 * 299.99607 * 13 2 1 15 15 C 1.46901 * 110.99958 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47324 * 180.02562 * 15 14 13 17 17 N 1.46493 * 109.47245 * 180.02562 * 16 15 14 18 18 C 1.34778 * 119.99793 * 179.97438 * 17 16 15 19 19 O 1.21695 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.46661 * 119.99796 * 179.97438 * 18 17 16 21 21 C 1.36547 * 125.98711 * 179.97438 * 20 18 17 22 22 C 1.40360 * 106.70833 * 180.02562 * 21 20 18 23 23 C 1.35131 * 107.11647 * 359.97438 * 22 21 20 24 24 O 1.33934 * 108.76477 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.46736 * 300.00076 * 1 2 3 26 26 H 1.08995 * 109.47415 * 60.00173 * 1 2 3 27 27 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47390 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47208 * 299.99740 * 3 2 1 30 30 H 1.08999 * 109.47380 * 60.00319 * 3 2 1 31 31 H 1.09010 * 109.47214 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47264 * 299.99377 * 4 2 1 33 33 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46847 * 180.02562 * 13 2 1 35 35 H 1.09003 * 109.47572 * 60.00296 * 13 2 1 36 36 H 1.00900 * 111.00437 * 303.95627 * 14 13 2 37 37 H 1.08997 * 109.47544 * 59.99985 * 15 14 13 38 38 H 1.09001 * 109.47083 * 300.00286 * 15 14 13 39 39 H 1.08997 * 109.47315 * 59.99241 * 16 15 14 40 40 H 1.09001 * 109.46782 * 299.99867 * 16 15 14 41 41 H 0.96998 * 120.00266 * 359.97438 * 17 16 15 42 42 H 1.08005 * 126.64485 * 0.02562 * 21 20 18 43 43 H 1.08003 * 126.44294 * 180.02562 * 22 21 20 44 44 H 1.07997 * 125.61851 * 180.26772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 1.4315 0.1374 -4.8058 9 14 2.9441 -2.0011 -3.9033 10 1 2.0855 -3.2119 -3.9483 11 1 3.7356 -1.9089 -5.1564 12 1 3.8650 -2.0900 -2.7417 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.4925 0.0533 4.8956 17 7 1.9632 -0.6102 6.1138 18 6 1.6191 -0.1231 7.3224 19 8 0.9177 0.8683 7.4017 20 6 2.0899 -0.7878 8.5421 21 6 1.8174 -0.4009 9.8229 22 6 2.4655 -1.3158 10.6673 23 6 3.0968 -2.2100 9.8750 24 8 2.8682 -1.8884 8.5951 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7209 -1.2495 32 1 1.6767 -1.7490 -1.2492 33 1 1.6658 -0.1940 -5.6868 34 1 3.1300 -0.7208 1.2494 35 1 1.6767 -1.7490 1.2493 36 1 1.8198 0.9436 2.4402 37 1 3.1118 -0.6940 3.6869 38 1 1.6588 -1.7221 3.6873 39 1 0.4026 0.0526 4.8788 40 1 1.8553 1.0811 4.8787 41 1 2.5225 -1.4002 6.0506 42 1 1.2190 0.4451 10.1273 43 1 2.4600 -1.3072 11.7473 44 1 3.6851 -3.0485 10.2173 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174253693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:29 Heat of formation + Delta-G solvation = -32.881517 kcal Electronic energy + Delta-G solvation = -22701.260976 eV Core-core repulsion = 19233.941776 eV Total energy + Delta-G solvation = -3467.319200 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.10425 -39.77958 -37.93621 -35.91654 -34.01450 -33.43966 -32.17779 -30.66451 -28.75794 -27.45817 -26.38919 -25.16031 -23.63423 -22.38941 -22.06506 -21.79943 -20.65365 -18.96617 -17.87764 -16.84646 -16.79856 -16.72123 -16.26901 -16.05168 -15.07907 -14.72909 -14.49891 -14.19299 -13.76894 -13.67127 -13.45849 -13.42171 -13.14364 -12.94242 -12.68664 -12.39923 -12.13508 -11.75291 -11.62562 -11.07288 -10.95617 -10.86847 -10.69213 -10.51888 -10.51426 -10.38150 -9.80880 -9.70340 -9.53571 -9.32159 -9.09898 -8.91884 -8.50357 -8.30089 -6.00354 -3.96619 0.64004 1.91353 2.23378 2.80212 2.82166 3.31380 3.39088 3.41797 4.20217 4.38522 4.45153 4.47495 4.55611 4.76460 4.94075 5.17476 5.29371 5.31905 5.32460 5.43436 5.50990 5.59078 5.70704 5.77504 5.84858 5.85800 5.97074 6.10229 6.21266 6.36427 6.38583 6.58228 6.66562 6.78959 7.01993 7.07126 7.10702 7.16389 7.23392 7.31261 7.41937 7.52658 7.71035 7.84571 8.59276 9.05630 9.62509 11.12701 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036805 B = 0.002190 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.584393 B =12783.972879 C =13335.567665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.049 4.049 3 C -0.132 4.132 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 C 0.069 3.931 14 N -0.682 5.682 15 C 0.047 3.953 16 C 0.119 3.881 17 N -0.717 5.717 18 C 0.602 3.398 19 O -0.517 6.517 20 C -0.079 4.079 21 C -0.120 4.120 22 C -0.226 4.226 23 C -0.007 4.007 24 O -0.165 6.165 25 H 0.045 0.955 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.040 0.960 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.012 0.988 32 H 0.010 0.990 33 H 0.261 0.739 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.343 0.657 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.405 0.595 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.433 -4.839 29.530 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.189 4.189 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.060 4.060 14 N -0.314 5.314 15 C -0.083 4.083 16 C -0.004 4.004 17 N -0.368 5.368 18 C 0.388 3.612 19 O -0.395 6.395 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.245 4.245 23 C -0.076 4.076 24 O -0.060 6.060 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.162 0.838 37 H 0.051 0.949 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.240 0.760 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.424 -4.588 29.071 29.629 hybrid contribution 1.865 -1.060 -0.021 2.146 sum 5.289 -5.648 29.050 30.063 Atomic orbital electron populations 1.21627 0.94427 1.00723 1.00845 1.20432 0.96305 0.95105 0.93148 1.21793 0.99612 0.96407 1.01098 1.19629 0.95803 0.95463 0.93305 1.21135 1.31465 1.13262 0.88663 0.90387 1.25029 0.95837 0.96765 0.96049 1.69909 1.46091 1.40619 0.97822 0.86839 0.81260 0.84048 0.77437 1.20446 1.21585 1.19231 1.22157 0.96382 0.98168 0.89248 1.60435 1.63639 1.06681 1.00680 1.22064 0.97342 0.99125 0.89767 1.21402 1.00839 0.96436 0.81757 1.45816 1.53285 1.32208 1.05536 1.16508 0.80183 0.83288 0.81203 1.90912 1.37625 1.24928 1.86022 1.22115 1.02937 0.91769 0.96309 1.22017 1.00525 1.00852 0.90673 1.21895 1.03479 0.97648 1.01432 1.24449 1.01924 1.01269 0.80002 1.84063 1.54295 1.38133 1.29510 0.93579 0.92047 0.94195 0.94119 0.91052 0.94486 0.96948 0.97141 0.92886 0.95687 0.91411 0.83756 0.94902 0.90460 0.89846 0.91078 0.75995 0.82130 0.82499 0.77250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.24 8.06 37.16 0.30 -1.94 16 2 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 3 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 4 C 0.00 -0.10 3.11 -27.89 -0.09 -0.18 16 5 C -0.51 -13.89 8.20 -34.44 -0.28 -14.17 16 6 H 0.08 2.28 5.92 -52.49 -0.31 1.97 16 7 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 8 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 9 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.07 1.07 4.65 -3.82 -0.02 1.05 16 14 N -0.68 -8.83 5.71 -113.78 -0.65 -9.48 16 15 C 0.05 0.48 5.80 -3.82 -0.02 0.46 16 16 C 0.12 1.21 5.93 -4.05 -0.02 1.18 16 17 N -0.72 -6.71 5.55 -61.63 -0.34 -7.05 16 18 C 0.60 6.84 7.79 -12.86 -0.10 6.74 16 19 O -0.52 -7.55 16.86 5.19 0.09 -7.46 16 20 C -0.08 -0.77 7.13 -36.79 -0.26 -1.03 16 21 C -0.12 -1.03 10.62 -39.39 -0.42 -1.44 16 22 C -0.23 -1.37 10.87 -39.89 -0.43 -1.80 16 23 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 24 O -0.16 -1.31 10.40 5.00 0.05 -1.26 16 25 H 0.05 0.78 7.60 -51.93 -0.39 0.39 16 26 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 30 H 0.04 0.56 6.57 -51.93 -0.34 0.22 16 31 H 0.01 0.29 7.20 -51.92 -0.37 -0.08 16 32 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.34 4.29 6.77 -39.29 -0.27 4.03 16 37 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.41 2.94 8.23 -40.82 -0.34 2.61 16 42 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.16 0.56 8.06 -52.48 -0.42 0.14 16 44 H 0.21 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -32.53 359.64 -7.14 -39.66 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.92 Total: 2.25 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.89 Total: -12.18 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.22 Total: -43.39 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.14 Total: -8.72 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.53 -7.14 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174253693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.782 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds