Wall clock time and date at job start Tue Mar 31 2020 07:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47115 * 2 1 4 4 C 1.52999 * 109.46887 * 239.99989 * 2 1 3 5 5 C 1.50695 * 109.47353 * 60.00180 * 4 2 1 6 6 H 1.08002 * 119.99824 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00127 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99846 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99843 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46976 * 90.00661 * 9 7 5 11 11 H 1.48498 * 109.46905 * 210.00134 * 9 7 5 12 12 H 1.48501 * 109.47413 * 330.00151 * 9 7 5 13 13 C 1.53001 * 109.47113 * 119.99999 * 2 1 3 14 14 N 1.46898 * 109.47126 * 299.99607 * 13 2 1 15 15 C 1.46901 * 110.99958 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.47324 * 180.02562 * 15 14 13 17 17 N 1.46493 * 109.47245 * 180.02562 * 16 15 14 18 18 C 1.34778 * 119.99793 * 179.97438 * 17 16 15 19 19 O 1.21695 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.46661 * 119.99796 * 179.97438 * 18 17 16 21 21 C 1.36547 * 125.98711 * 179.97438 * 20 18 17 22 22 C 1.40360 * 106.70833 * 180.02562 * 21 20 18 23 23 C 1.35131 * 107.11647 * 359.97438 * 22 21 20 24 24 O 1.33934 * 108.76477 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.46736 * 300.00076 * 1 2 3 26 26 H 1.08995 * 109.47415 * 60.00173 * 1 2 3 27 27 H 1.08997 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47390 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47208 * 299.99740 * 3 2 1 30 30 H 1.08999 * 109.47380 * 60.00319 * 3 2 1 31 31 H 1.09010 * 109.47214 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.47264 * 299.99377 * 4 2 1 33 33 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 34 34 H 1.09004 * 109.46847 * 180.02562 * 13 2 1 35 35 H 1.09003 * 109.47572 * 60.00296 * 13 2 1 36 36 H 1.00900 * 111.00437 * 303.95627 * 14 13 2 37 37 H 1.08997 * 109.47544 * 59.99985 * 15 14 13 38 38 H 1.09001 * 109.47083 * 300.00286 * 15 14 13 39 39 H 1.08997 * 109.47315 * 59.99241 * 16 15 14 40 40 H 1.09001 * 109.46782 * 299.99867 * 16 15 14 41 41 H 0.96998 * 120.00266 * 359.97438 * 17 16 15 42 42 H 1.08005 * 126.64485 * 0.02562 * 21 20 18 43 43 H 1.08003 * 126.44294 * 180.02562 * 22 21 20 44 44 H 1.07997 * 125.61851 * 180.26772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4823 -3.7320 8 7 1.4315 0.1374 -4.8058 9 14 2.9441 -2.0011 -3.9033 10 1 2.0855 -3.2119 -3.9483 11 1 3.7356 -1.9089 -5.1564 12 1 3.8650 -2.0900 -2.7417 13 6 2.0400 -0.7213 1.2492 14 7 1.5504 -0.0287 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.4925 0.0533 4.8956 17 7 1.9632 -0.6102 6.1138 18 6 1.6191 -0.1231 7.3224 19 8 0.9177 0.8683 7.4017 20 6 2.0899 -0.7878 8.5421 21 6 1.8174 -0.4009 9.8229 22 6 2.4655 -1.3158 10.6673 23 6 3.0968 -2.2100 9.8750 24 8 2.8682 -1.8884 8.5951 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7209 -1.2495 32 1 1.6767 -1.7490 -1.2492 33 1 1.6658 -0.1940 -5.6868 34 1 3.1300 -0.7208 1.2494 35 1 1.6767 -1.7490 1.2493 36 1 1.8198 0.9436 2.4402 37 1 3.1118 -0.6940 3.6869 38 1 1.6588 -1.7221 3.6873 39 1 0.4026 0.0526 4.8788 40 1 1.8553 1.0811 4.8787 41 1 2.5225 -1.4002 6.0506 42 1 1.2190 0.4451 10.1273 43 1 2.4600 -1.3072 11.7473 44 1 3.6851 -3.0485 10.2173 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174253693.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:28 Heat of formation + Delta-G solvation = -56.345723 kcal Electronic energy + Delta-G solvation = -22702.278460 eV Core-core repulsion = 19233.941776 eV Total energy + Delta-G solvation = -3468.336684 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.64444 -40.62949 -39.28349 -36.97823 -35.21569 -34.17039 -33.95998 -31.39567 -30.01502 -28.97926 -27.91047 -26.44045 -24.64075 -23.54196 -23.00277 -22.65219 -21.35853 -19.72100 -19.33821 -18.85658 -17.48081 -17.39604 -17.07469 -16.91196 -16.32547 -16.08000 -15.73145 -15.47756 -15.07415 -14.76131 -14.59267 -14.22313 -14.12360 -13.97086 -13.87900 -13.66590 -13.54618 -13.07405 -12.78943 -12.68063 -12.52314 -12.32098 -12.22596 -12.04731 -11.71628 -11.58219 -11.34984 -11.06011 -10.98469 -10.81243 -10.69145 -10.35965 -9.65537 -9.32754 -8.20643 -6.21090 0.00440 1.37018 1.38269 1.42040 1.49341 1.61337 2.05811 2.12190 2.40407 3.14255 3.34816 3.70319 3.90322 3.95085 4.06251 4.13111 4.16127 4.23681 4.34228 4.49250 4.61333 4.73988 4.76891 4.87265 4.91594 4.91969 4.94921 4.97039 5.05247 5.09683 5.18979 5.20713 5.38400 5.38902 5.47016 5.53754 5.63351 5.76654 5.81570 5.83070 6.05690 6.36263 6.42425 6.47378 6.86628 6.93555 7.41183 8.95578 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.036805 B = 0.002190 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.584393 B =12783.972879 C =13335.567665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.050 4.050 3 C -0.126 4.126 4 C -0.003 4.003 5 C -0.504 4.504 6 H 0.043 0.957 7 C -0.003 4.003 8 N -0.955 5.955 9 Si 0.943 3.057 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.247 1.247 13 C 0.082 3.918 14 N -0.687 5.687 15 C 0.056 3.944 16 C 0.126 3.874 17 N -0.706 5.706 18 C 0.600 3.400 19 O -0.562 6.562 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.236 4.236 23 C 0.012 3.988 24 O -0.170 6.170 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.346 0.654 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.417 0.583 42 H 0.157 0.843 43 H 0.182 0.818 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 -7.200 32.410 33.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.051 4.051 3 C -0.184 4.184 4 C -0.041 4.041 5 C -0.542 4.542 6 H 0.061 0.939 7 C -0.198 4.198 8 N -0.597 5.597 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.216 1.216 12 H -0.170 1.170 13 C -0.047 4.047 14 N -0.320 5.320 15 C -0.074 4.074 16 C 0.003 3.997 17 N -0.357 5.357 18 C 0.387 3.613 19 O -0.443 6.443 20 C -0.162 4.162 21 C -0.148 4.148 22 C -0.254 4.254 23 C -0.057 4.057 24 O -0.065 6.065 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.166 0.834 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.254 0.746 42 H 0.175 0.825 43 H 0.200 0.800 44 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 5.378 -6.973 31.970 33.161 hybrid contribution 1.230 -0.292 -0.808 1.500 sum 6.608 -7.265 31.162 32.673 Atomic orbital electron populations 1.21533 0.94770 1.00439 1.00086 1.20373 0.96001 0.95460 0.93254 1.21714 0.99900 0.95951 1.00793 1.19599 0.95734 0.95423 0.93332 1.21449 1.30038 1.12137 0.90573 0.93902 1.25976 0.97715 1.00367 0.95783 1.70073 1.48329 1.42896 0.98441 0.85759 0.79644 0.79857 0.77954 1.19639 1.21612 1.17019 1.21870 0.96650 0.97796 0.88369 1.60333 1.63991 1.06915 1.00790 1.22012 0.98131 0.99031 0.88206 1.21236 0.99983 0.96388 0.82131 1.45688 1.52880 1.32284 1.04827 1.16751 0.79577 0.82847 0.82081 1.90876 1.39748 1.26905 1.86757 1.21788 1.05283 0.93377 0.95795 1.22278 1.00249 1.01129 0.91097 1.22232 1.03361 0.97180 1.02674 1.25402 1.00271 1.01308 0.78752 1.84055 1.54046 1.37471 1.30977 0.91539 0.95485 0.94202 0.93520 0.94643 0.91509 0.96680 0.96866 0.92948 0.94893 0.91103 0.83402 0.93418 0.89691 0.91251 0.91542 0.74597 0.82515 0.80018 0.72875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 8.06 71.98 0.58 -3.57 16 2 C -0.05 -1.84 0.60 -52.18 -0.03 -1.87 16 3 C -0.13 -4.44 7.89 71.98 0.57 -3.87 16 4 C 0.00 -0.14 3.11 29.85 0.09 -0.04 16 5 C -0.50 -28.22 8.20 25.60 0.21 -28.01 16 6 H 0.04 2.65 5.92 -2.91 -0.02 2.63 16 7 C 0.00 -0.17 5.47 84.66 0.46 0.29 16 8 N -0.96 -60.26 13.96 21.45 0.30 -59.96 16 9 Si 0.94 44.40 27.47 68.60 1.88 46.28 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 13 C 0.08 2.31 4.65 86.30 0.40 2.71 16 14 N -0.69 -15.93 5.71 -513.88 -2.94 -18.87 16 15 C 0.06 0.98 5.80 86.30 0.50 1.49 16 16 C 0.13 2.39 5.93 86.38 0.51 2.90 16 17 N -0.71 -12.35 5.55 -467.11 -2.59 -14.94 16 18 C 0.60 13.54 7.79 86.44 0.67 14.21 16 19 O -0.56 -16.85 16.86 -4.33 -0.07 -16.93 16 20 C -0.11 -2.05 7.13 24.08 0.17 -1.88 16 21 C -0.13 -2.06 10.62 22.39 0.24 -1.83 16 22 C -0.24 -2.25 10.87 22.07 0.24 -2.01 16 23 C 0.01 0.09 12.08 67.10 0.81 0.90 16 24 O -0.17 -2.32 10.40 -5.01 -0.05 -2.37 16 25 H 0.07 2.18 7.60 -2.39 -0.02 2.17 16 26 H 0.03 1.16 6.62 -2.39 -0.02 1.15 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.03 1.48 6.62 -2.38 -0.02 1.46 16 30 H 0.07 1.92 6.57 -2.39 -0.02 1.90 16 31 H 0.01 0.67 7.20 -2.38 -0.02 0.65 16 32 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 33 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.35 7.72 6.77 -89.69 -0.61 7.12 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.42 5.23 8.23 -92.71 -0.76 4.46 16 42 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.18 0.71 8.06 -2.91 -0.02 0.68 16 44 H 0.26 -0.71 8.06 -2.91 -0.02 -0.74 16 Total: -1.00 -73.36 359.64 1.54 -71.82 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -0.42 Total: 15.55 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 5.43 Total: -20.59 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -5.23 Total: -93.77 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.13 Total: -19.30 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -73.36 1.54 -71.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174253693.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.472 kcal (2) G-P(sol) polarization free energy of solvation -73.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds