Wall clock time and date at job start Tue Mar 31 2020 06:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47654 * 2 1 4 4 C 1.38125 * 126.29269 * 274.46743 * 3 2 1 5 5 C 1.47290 * 126.43199 * 0.03692 * 4 3 2 6 6 O 1.21524 * 119.99394 * 0.29936 * 5 4 3 7 7 O 1.34747 * 119.99980 * 180.30880 * 5 4 3 8 8 C 1.45207 * 116.99658 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47146 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47252 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99746 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00264 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99956 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00182 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46797 * 90.00353 * 14 12 10 16 16 H 1.48504 * 109.47082 * 210.00008 * 14 12 10 17 17 H 1.48495 * 109.47124 * 330.00127 * 14 12 10 18 18 C 1.41348 * 107.14685 * 180.27238 * 4 3 2 19 19 N 1.30432 * 108.01021 * 359.76208 * 18 4 3 20 20 N 1.34219 * 126.29934 * 94.33717 * 3 2 1 21 21 C 1.46504 * 125.74272 * 359.97438 * 20 3 2 22 22 C 1.53002 * 109.46755 * 89.88864 * 21 20 3 23 23 C 1.53000 * 109.46838 * 185.50541 * 22 21 20 24 24 C 1.52995 * 109.46888 * 65.50637 * 22 21 20 25 25 H 1.08993 * 109.47342 * 184.63238 * 1 2 3 26 26 H 1.09003 * 109.46901 * 304.63779 * 1 2 3 27 27 H 1.08999 * 109.46819 * 64.63097 * 1 2 3 28 28 H 1.09000 * 109.47525 * 240.00006 * 2 1 3 29 29 H 1.08998 * 109.47187 * 119.99856 * 2 1 3 30 30 H 1.09006 * 109.46945 * 299.99412 * 8 7 5 31 31 H 1.09005 * 109.47158 * 59.99614 * 8 7 5 32 32 H 1.08995 * 109.47217 * 300.00179 * 9 8 7 33 33 H 1.09005 * 109.47052 * 59.99984 * 9 8 7 34 34 H 0.96993 * 120.00041 * 179.97438 * 13 12 10 35 35 H 1.07995 * 125.99476 * 179.78318 * 18 4 3 36 36 H 1.08999 * 109.47065 * 329.89018 * 21 20 3 37 37 H 1.08997 * 109.47087 * 209.89225 * 21 20 3 38 38 H 1.09003 * 109.47380 * 305.50439 * 22 21 20 39 39 H 1.09003 * 109.47052 * 300.00099 * 23 22 21 40 40 H 1.08996 * 109.47383 * 60.00157 * 23 22 21 41 41 H 1.09001 * 109.46891 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.46801 * 175.65205 * 24 22 21 43 43 H 1.08996 * 109.47126 * 295.64872 * 24 22 21 44 44 H 1.08999 * 109.47392 * 55.65560 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2233 2.2205 -1.1099 5 6 1.9734 1.8449 -2.5120 6 8 1.5527 0.7363 -2.7783 7 8 2.2115 2.7304 -3.4994 8 6 1.9431 2.2915 -4.8573 9 6 2.2702 3.4235 -5.8332 10 6 1.9923 2.9678 -7.2425 11 1 1.6192 1.9706 -7.4239 12 6 2.2132 3.8242 -8.3002 13 7 2.6670 5.0387 -8.0792 14 14 1.8679 3.2596 -10.0470 15 1 0.4625 3.5815 -10.4026 16 1 2.7872 3.9555 -10.9830 17 1 2.0797 1.7930 -10.1442 18 6 2.7085 3.4652 -0.6482 19 7 2.7942 3.4075 0.6520 20 7 2.3745 2.1426 1.0786 21 6 2.3227 1.6818 2.4683 22 6 3.6597 1.0388 2.8425 23 6 3.5608 0.4359 4.2452 24 6 4.7604 2.1013 2.8205 25 1 -0.3633 -1.0242 0.0830 26 1 -0.3633 0.5841 0.8456 27 1 -0.3633 0.4403 -0.9286 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5608 1.4233 -5.0873 31 1 0.8907 2.0239 -4.9513 32 1 1.6524 4.2915 -5.6031 33 1 3.3226 3.6915 -5.7393 34 1 2.8228 5.6411 -8.8233 35 1 2.9633 4.3150 -1.2640 36 1 1.5236 0.9488 2.5785 37 1 2.1309 2.5300 3.1255 38 1 3.8985 0.2534 2.1254 39 1 3.3220 1.2213 4.9622 40 1 2.7767 -0.3210 4.2608 41 1 4.5132 -0.0226 4.5115 42 1 5.6974 1.6608 3.1614 43 1 4.8835 2.4759 1.8044 44 1 4.4845 2.9240 3.4802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179320696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:51 Heat of formation + Delta-G solvation = -44.166437 kcal Electronic energy + Delta-G solvation = -23503.336773 eV Core-core repulsion = 20035.528222 eV Total energy + Delta-G solvation = -3467.808551 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64098 -39.35153 -36.84744 -35.91675 -34.16598 -33.27275 -32.13156 -30.29714 -29.34780 -27.56827 -26.98277 -25.07333 -24.06097 -22.56703 -21.37045 -20.88759 -20.35489 -19.28228 -17.64897 -16.48914 -15.99181 -15.84933 -15.74676 -15.46007 -15.41360 -14.54636 -14.46319 -14.27358 -13.91087 -13.40288 -13.23585 -13.02904 -12.79047 -12.65229 -12.50316 -12.38542 -12.31798 -11.80185 -11.70813 -11.42304 -11.33720 -11.23824 -11.14574 -10.99652 -10.78338 -10.66382 -10.59787 -10.03918 -9.54776 -9.54406 -9.47386 -9.24502 -8.68665 -8.39702 -6.06139 -4.10073 1.39157 2.13871 2.18114 3.31327 3.35559 3.38736 3.46810 3.50942 4.14523 4.24382 4.29189 4.43484 4.52120 4.66271 4.75588 4.91717 5.04650 5.07977 5.15051 5.23251 5.26351 5.29919 5.30399 5.39333 5.48521 5.54229 5.62926 5.63952 5.79146 5.81665 5.95865 6.00172 6.10175 6.19076 6.21849 6.44327 6.70912 6.72590 7.13612 7.50654 7.63033 7.69475 7.92824 8.27438 8.44250 8.95672 9.53983 11.05457 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030651 B = 0.002778 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.286772 B =10076.753576 C =10638.069894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C 0.162 3.838 4 C -0.275 4.275 5 C 0.536 3.464 6 O -0.528 6.528 7 O -0.353 6.353 8 C 0.079 3.921 9 C 0.024 3.976 10 C -0.525 4.525 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.105 3.895 19 N -0.300 5.300 20 N -0.357 5.357 21 C 0.132 3.868 22 C -0.115 4.115 23 C -0.145 4.145 24 C -0.146 4.146 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.199 0.801 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 -8.787 25.623 27.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C 0.029 3.971 4 C -0.288 4.288 5 C 0.382 3.618 6 O -0.419 6.419 7 O -0.269 6.269 8 C 0.006 3.994 9 C -0.013 4.013 10 C -0.563 4.563 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.083 4.083 19 N -0.118 5.118 20 N -0.135 5.135 21 C 0.011 3.989 22 C -0.134 4.134 23 C -0.203 4.203 24 C -0.203 4.203 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.127 0.873 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.216 0.784 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.132 -8.301 26.628 27.892 hybrid contribution -0.358 -0.621 -1.830 1.966 sum -0.226 -8.922 24.798 26.355 Atomic orbital electron populations 1.21650 0.93270 1.02292 1.02715 1.20442 0.97291 0.88395 1.04587 1.21458 0.94381 0.94860 0.86364 1.19221 1.21496 0.96938 0.91123 1.19914 0.74063 0.82574 0.85270 1.90748 1.44053 1.22335 1.84804 1.86562 1.78199 1.44033 1.18138 1.23592 1.00159 1.00451 0.75209 1.19164 0.98364 0.92571 0.91189 1.20989 1.44928 0.99887 0.90470 0.92282 1.24982 0.94956 0.94834 0.99421 1.69977 1.44844 1.06290 1.31787 0.86485 0.78169 0.78862 0.83869 1.20513 1.21092 1.19738 1.24263 0.94902 0.97663 0.91478 1.77230 1.22931 0.98345 1.13299 1.48441 1.49140 1.09883 1.06034 1.21954 0.98725 1.00409 0.77825 1.21563 0.94754 0.98685 0.98392 1.21781 1.02509 1.00818 0.95160 1.21812 0.97457 0.98050 1.02973 0.91492 0.93227 0.91234 0.87264 0.90819 0.92417 0.92424 0.95361 0.95355 0.92756 0.78443 0.88710 0.88214 0.90524 0.92140 0.92282 0.91789 0.92576 0.91931 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.15 0.37 -1.01 16 2 C -0.07 -0.71 5.34 -27.88 -0.15 -0.86 16 3 C 0.16 2.06 6.26 -81.59 -0.51 1.55 16 4 C -0.28 -4.29 6.13 -105.08 -0.64 -4.94 16 5 C 0.54 10.07 7.95 34.41 0.27 10.34 16 6 O -0.53 -10.47 14.57 -19.29 -0.28 -10.75 16 7 O -0.35 -7.38 10.07 -40.62 -0.41 -7.78 16 8 C 0.08 1.79 5.41 37.16 0.20 1.99 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 11 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 14 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.10 1.50 11.87 -16.96 -0.20 1.30 16 19 N -0.30 -4.02 11.69 30.87 0.36 -3.66 16 20 N -0.36 -4.05 3.22 -56.59 -0.18 -4.23 16 21 C 0.13 0.98 5.38 -4.04 -0.02 0.95 16 22 C -0.11 -0.77 3.12 -90.62 -0.28 -1.05 16 23 C -0.14 -0.65 9.19 37.16 0.34 -0.31 16 24 C -0.15 -1.17 8.96 37.16 0.33 -0.84 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 28 H 0.11 1.34 6.76 -51.93 -0.35 0.99 16 29 H 0.07 0.55 7.50 -51.93 -0.39 0.16 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.20 2.55 8.06 -52.49 -0.42 2.13 16 36 H 0.09 0.51 7.53 -51.93 -0.39 0.12 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.66 7.21 -51.93 -0.37 0.29 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -32.41 370.06 -7.45 -39.86 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -7.38 Total: -3.70 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.85 Total: -5.98 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.92 Total: -33.80 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.69 Total: -18.53 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.41 -7.45 -39.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179320696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.302 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds