Wall clock time and date at job start Tue Mar 31 2020 06:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.47654 * 2 1 4 4 C 1.38125 * 126.29269 * 274.46743 * 3 2 1 5 5 C 1.47290 * 126.43199 * 0.03692 * 4 3 2 6 6 O 1.21524 * 119.99394 * 0.29936 * 5 4 3 7 7 O 1.34747 * 119.99980 * 180.30880 * 5 4 3 8 8 C 1.45207 * 116.99658 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47146 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47252 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99746 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00264 * 179.97438 * 10 9 8 13 13 N 1.31523 * 119.99956 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00182 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46797 * 90.00353 * 14 12 10 16 16 H 1.48504 * 109.47082 * 210.00008 * 14 12 10 17 17 H 1.48495 * 109.47124 * 330.00127 * 14 12 10 18 18 C 1.41348 * 107.14685 * 180.27238 * 4 3 2 19 19 N 1.30432 * 108.01021 * 359.76208 * 18 4 3 20 20 N 1.34219 * 126.29934 * 94.33717 * 3 2 1 21 21 C 1.46504 * 125.74272 * 359.97438 * 20 3 2 22 22 C 1.53002 * 109.46755 * 89.88864 * 21 20 3 23 23 C 1.53000 * 109.46838 * 185.50541 * 22 21 20 24 24 C 1.52995 * 109.46888 * 65.50637 * 22 21 20 25 25 H 1.08993 * 109.47342 * 184.63238 * 1 2 3 26 26 H 1.09003 * 109.46901 * 304.63779 * 1 2 3 27 27 H 1.08999 * 109.46819 * 64.63097 * 1 2 3 28 28 H 1.09000 * 109.47525 * 240.00006 * 2 1 3 29 29 H 1.08998 * 109.47187 * 119.99856 * 2 1 3 30 30 H 1.09006 * 109.46945 * 299.99412 * 8 7 5 31 31 H 1.09005 * 109.47158 * 59.99614 * 8 7 5 32 32 H 1.08995 * 109.47217 * 300.00179 * 9 8 7 33 33 H 1.09005 * 109.47052 * 59.99984 * 9 8 7 34 34 H 0.96993 * 120.00041 * 179.97438 * 13 12 10 35 35 H 1.07995 * 125.99476 * 179.78318 * 18 4 3 36 36 H 1.08999 * 109.47065 * 329.89018 * 21 20 3 37 37 H 1.08997 * 109.47087 * 209.89225 * 21 20 3 38 38 H 1.09003 * 109.47380 * 305.50439 * 22 21 20 39 39 H 1.09003 * 109.47052 * 300.00099 * 23 22 21 40 40 H 1.08996 * 109.47383 * 60.00157 * 23 22 21 41 41 H 1.09001 * 109.46891 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.46801 * 175.65205 * 24 22 21 43 43 H 1.08996 * 109.47126 * 295.64872 * 24 22 21 44 44 H 1.08999 * 109.47392 * 55.65560 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2233 2.2205 -1.1099 5 6 1.9734 1.8449 -2.5120 6 8 1.5527 0.7363 -2.7783 7 8 2.2115 2.7304 -3.4994 8 6 1.9431 2.2915 -4.8573 9 6 2.2702 3.4235 -5.8332 10 6 1.9923 2.9678 -7.2425 11 1 1.6192 1.9706 -7.4239 12 6 2.2132 3.8242 -8.3002 13 7 2.6670 5.0387 -8.0792 14 14 1.8679 3.2596 -10.0470 15 1 0.4625 3.5815 -10.4026 16 1 2.7872 3.9555 -10.9830 17 1 2.0797 1.7930 -10.1442 18 6 2.7085 3.4652 -0.6482 19 7 2.7942 3.4075 0.6520 20 7 2.3745 2.1426 1.0786 21 6 2.3227 1.6818 2.4683 22 6 3.6597 1.0388 2.8425 23 6 3.5608 0.4359 4.2452 24 6 4.7604 2.1013 2.8205 25 1 -0.3633 -1.0242 0.0830 26 1 -0.3633 0.5841 0.8456 27 1 -0.3633 0.4403 -0.9286 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5608 1.4233 -5.0873 31 1 0.8907 2.0239 -4.9513 32 1 1.6524 4.2915 -5.6031 33 1 3.3226 3.6915 -5.7393 34 1 2.8228 5.6411 -8.8233 35 1 2.9633 4.3150 -1.2640 36 1 1.5236 0.9488 2.5785 37 1 2.1309 2.5300 3.1255 38 1 3.8985 0.2534 2.1254 39 1 3.3220 1.2213 4.9622 40 1 2.7767 -0.3210 4.2608 41 1 4.5132 -0.0226 4.5115 42 1 5.6974 1.6608 3.1614 43 1 4.8835 2.4759 1.8044 44 1 4.4845 2.9240 3.4802 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179320696.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:50 Heat of formation + Delta-G solvation = -61.675170 kcal Electronic energy + Delta-G solvation = -23504.096008 eV Core-core repulsion = 20035.528222 eV Total energy + Delta-G solvation = -3468.567786 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.69167 -40.89464 -37.60914 -37.40762 -35.44005 -35.04219 -33.07834 -32.24614 -30.47051 -28.10302 -27.89381 -26.88312 -25.10482 -23.85104 -22.86383 -22.12385 -21.40153 -20.30010 -19.05579 -18.30900 -17.48791 -17.42080 -16.85737 -16.50070 -16.44371 -16.22015 -15.41255 -15.06215 -15.01980 -14.50745 -14.46991 -14.35949 -14.20858 -13.83211 -13.35870 -13.19862 -13.10478 -13.02198 -12.91035 -12.71830 -12.57625 -12.50350 -12.35189 -12.20166 -11.93276 -11.85978 -11.75413 -11.63725 -11.47282 -11.40414 -11.23575 -10.59821 -10.42118 -9.80563 -8.25510 -6.38680 0.27322 0.98136 1.22981 1.41875 1.43941 1.55228 1.94227 2.15313 2.42224 3.08753 3.37514 3.42885 3.69736 3.79333 3.86289 4.00520 4.07295 4.26934 4.28363 4.30591 4.31515 4.40390 4.48721 4.59186 4.61400 4.68024 4.74649 4.78484 4.91831 4.95493 5.00970 5.10292 5.16604 5.28088 5.29607 5.33104 5.34990 5.39890 5.49277 5.60957 5.77126 5.83217 6.08494 6.43935 6.74453 6.89003 7.30926 8.87317 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030651 B = 0.002778 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.286772 B =10076.753576 C =10638.069894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.067 4.067 3 C 0.177 3.823 4 C -0.310 4.310 5 C 0.534 3.466 6 O -0.543 6.543 7 O -0.364 6.364 8 C 0.095 3.905 9 C 0.031 3.969 10 C -0.548 4.548 11 H 0.066 0.934 12 C 0.005 3.995 13 N -0.928 5.928 14 Si 0.974 3.026 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.262 1.262 18 C 0.097 3.903 19 N -0.306 5.306 20 N -0.343 5.343 21 C 0.119 3.881 22 C -0.109 4.109 23 C -0.139 4.139 24 C -0.146 4.146 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.006 0.994 33 H 0.005 0.995 34 H 0.268 0.732 35 H 0.201 0.799 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.031 0.969 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -10.622 27.381 29.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 C 0.042 3.958 4 C -0.323 4.323 5 C 0.382 3.618 6 O -0.435 6.435 7 O -0.280 6.280 8 C 0.022 3.978 9 C -0.006 4.006 10 C -0.586 4.586 11 H 0.084 0.916 12 C -0.194 4.194 13 N -0.567 5.567 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.187 1.187 18 C -0.091 4.091 19 N -0.125 5.125 20 N -0.121 5.121 21 C 0.001 3.999 22 C -0.128 4.128 23 C -0.197 4.197 24 C -0.203 4.203 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.218 0.782 36 H 0.144 0.856 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.561 -10.137 28.435 30.193 hybrid contribution -0.107 -0.047 -2.191 2.194 sum -0.668 -10.184 26.244 28.159 Atomic orbital electron populations 1.21630 0.92531 1.03740 1.01628 1.20554 0.97756 0.86748 1.05524 1.21780 0.92641 0.95547 0.85807 1.19187 1.24590 0.98527 0.90017 1.20395 0.73512 0.82080 0.85859 1.90726 1.44984 1.22734 1.85062 1.86546 1.78837 1.44947 1.17702 1.23121 1.00083 0.98661 0.75963 1.18975 0.96374 0.93045 0.92208 1.21377 1.45334 1.00414 0.91494 0.91624 1.25985 0.94348 0.94769 1.04307 1.70105 1.45570 1.07574 1.33463 0.85311 0.78352 0.78800 0.77764 1.19500 1.20407 1.18655 1.24350 0.95133 0.97626 0.91985 1.77195 1.22952 0.99698 1.12638 1.48799 1.47190 1.08859 1.07230 1.22466 1.00259 1.01693 0.75519 1.21532 0.93552 0.97902 0.99838 1.21750 1.03272 1.01292 0.93397 1.21809 0.98673 0.98751 1.01080 0.89240 0.91561 0.94594 0.89285 0.86881 0.92272 0.92256 0.97607 0.97613 0.92362 0.78208 0.85629 0.87205 0.91059 0.91468 0.90668 0.91629 0.91877 0.94954 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 71.98 0.71 -1.67 16 2 C -0.07 -1.25 5.34 29.85 0.16 -1.09 16 3 C 0.18 4.31 6.26 42.17 0.26 4.58 16 4 C -0.31 -9.85 6.13 -20.16 -0.12 -9.98 16 5 C 0.53 20.73 7.95 70.20 0.56 21.28 16 6 O -0.54 -22.03 14.57 19.76 0.29 -21.74 16 7 O -0.36 -15.87 10.07 -56.58 -0.57 -16.44 16 8 C 0.09 4.48 5.41 71.98 0.39 4.87 16 9 C 0.03 1.73 5.35 29.85 0.16 1.89 16 10 C -0.55 -31.78 9.11 25.60 0.23 -31.54 16 11 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 12 C 0.00 0.27 5.46 84.65 0.46 0.73 16 13 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 14 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 C 0.10 2.84 11.87 85.67 1.02 3.86 16 19 N -0.31 -8.11 11.69 -56.25 -0.66 -8.77 16 20 N -0.34 -7.21 3.22 -332.95 -1.07 -8.28 16 21 C 0.12 1.39 5.38 86.38 0.47 1.85 16 22 C -0.11 -1.15 3.12 -10.79 -0.03 -1.19 16 23 C -0.14 -0.76 9.19 71.98 0.66 -0.09 16 24 C -0.15 -2.14 8.96 71.98 0.65 -1.50 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.03 0.87 7.97 -2.39 -0.02 0.85 16 28 H 0.09 2.11 6.76 -2.39 -0.02 2.09 16 29 H 0.11 1.22 7.50 -2.39 -0.02 1.20 16 30 H 0.06 2.74 8.14 -2.38 -0.02 2.73 16 31 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.20 5.50 8.06 -2.91 -0.02 5.48 16 36 H 0.13 0.75 7.53 -2.39 -0.02 0.73 16 37 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.03 0.67 7.21 -2.39 -0.02 0.65 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.91 370.06 6.83 -65.07 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.96 Total: 8.16 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.57 Total: -8.00 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -1.44 Total: -73.36 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.28 Total: -38.18 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -71.91 6.83 -65.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179320696.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.396 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds