Wall clock time and date at job start Tue Mar 31 2020 07:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47231 * 2 1 4 4 C 1.53004 * 109.47135 * 64.99971 * 3 2 1 5 5 C 1.52995 * 109.47034 * 185.00138 * 4 3 2 6 6 N 1.46494 * 109.47147 * 185.00089 * 3 2 1 7 7 N 1.28473 * 124.87996 * 299.99970 * 6 3 2 8 8 C 1.31854 * 110.06020 * 180.02562 * 7 6 3 9 9 C 1.47590 * 126.51976 * 180.02562 * 8 7 6 10 10 O 1.21486 * 120.00072 * 179.97438 * 9 8 7 11 11 O 1.34731 * 119.99927 * 359.97438 * 9 8 7 12 12 C 1.45193 * 116.99724 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47280 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47258 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00344 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31524 * 120.00168 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47161 * 89.99979 * 18 16 14 20 20 H 1.48499 * 109.47504 * 210.00322 * 18 16 14 21 21 H 1.48502 * 109.46911 * 330.00237 * 18 16 14 22 22 C 1.41543 * 106.95648 * 359.76760 * 8 7 6 23 23 C 1.35048 * 124.88196 * 119.99836 * 6 3 2 24 24 C 1.50703 * 126.37654 * 359.97438 * 23 6 3 25 25 H 1.09004 * 109.46794 * 300.00523 * 1 2 3 26 26 H 1.08998 * 109.47163 * 60.00027 * 1 2 3 27 27 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46877 * 239.99877 * 2 1 3 29 29 H 1.08998 * 109.47163 * 119.99972 * 2 1 3 30 30 H 1.09001 * 109.47028 * 305.00065 * 3 2 1 31 31 H 1.08996 * 109.46697 * 305.00112 * 4 3 2 32 32 H 1.08999 * 109.46744 * 65.00144 * 4 3 2 33 33 H 1.09004 * 109.46920 * 59.99799 * 5 4 3 34 34 H 1.09000 * 109.47155 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.46969 * 300.00222 * 5 4 3 36 36 H 1.08999 * 109.47381 * 299.99583 * 12 11 9 37 37 H 1.08997 * 109.47906 * 59.99623 * 12 11 9 38 38 H 1.08999 * 109.46798 * 300.00215 * 13 12 11 39 39 H 1.09005 * 109.46741 * 59.99530 * 13 12 11 40 40 H 0.96997 * 120.00203 * 179.97438 * 17 16 14 41 41 H 1.08000 * 127.25188 * 180.27891 * 22 8 7 42 42 H 1.09002 * 109.47152 * 89.99935 * 24 23 6 43 43 H 1.09001 * 109.46980 * 330.00035 * 24 23 6 44 44 H 1.09004 * 109.47113 * 210.00016 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1266 1.3074 5 6 2.0354 3.6024 1.2559 6 7 3.5000 1.4443 -0.1204 7 7 4.3066 0.8919 0.7132 8 6 5.5532 1.0709 0.3226 9 6 6.7668 0.5880 1.0098 10 8 7.8634 0.8215 0.5419 11 8 6.6586 -0.1119 2.1560 12 6 7.8940 -0.5546 2.7771 13 6 7.5727 -1.3264 4.0585 14 6 8.8549 -1.7864 4.7029 15 1 9.8042 -1.5514 4.2445 16 6 8.8163 -2.5064 5.8781 17 7 7.6603 -2.7921 6.4365 18 14 10.4057 -3.0760 6.6772 19 1 10.8859 -2.0351 7.6211 20 1 10.1625 -4.3406 7.4168 21 1 11.4323 -3.3053 5.6289 22 6 5.5058 1.8091 -0.8841 23 6 4.1916 2.0267 -1.1236 24 6 3.6083 2.7748 -2.2946 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6054 1.9816 -0.8418 31 1 0.5564 2.0471 1.4401 32 1 2.1409 1.6420 2.1426 33 1 1.5298 4.0870 0.4205 34 1 1.7475 4.0897 2.1874 35 1 3.1143 3.6819 1.1230 36 1 8.4351 -1.2030 2.0881 37 1 8.5096 0.3116 3.0198 38 1 7.0318 -0.6776 4.7474 39 1 6.9570 -2.1926 3.8162 40 1 7.6330 -3.2989 7.2631 41 1 6.3422 2.1318 -1.4864 42 1 3.5105 3.8300 -2.0394 43 1 2.6264 2.3665 -2.5339 44 1 4.2660 2.6691 -3.1574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180278627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:12 Heat of formation + Delta-G solvation = -36.105463 kcal Electronic energy + Delta-G solvation = -23525.930521 eV Core-core repulsion = 20058.471520 eV Total energy + Delta-G solvation = -3467.459000 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.84535 -39.52124 -37.22304 -35.89789 -33.29759 -32.94079 -32.22740 -31.64686 -30.16362 -27.27600 -26.98793 -25.20412 -23.81879 -23.18425 -21.18606 -21.12246 -20.61850 -19.28072 -17.31030 -16.89759 -16.44182 -16.03213 -15.67400 -15.60177 -15.14490 -14.56573 -14.46046 -14.35678 -13.87177 -13.39608 -13.34072 -13.14318 -12.98010 -12.70976 -12.53488 -12.41030 -12.30322 -12.19192 -11.86483 -11.42512 -11.23312 -11.15949 -10.99139 -10.97109 -10.69852 -10.67662 -10.64031 -10.29207 -9.56455 -9.54850 -9.23137 -9.12761 -8.97029 -8.38010 -6.04171 -4.08205 1.59371 2.00670 2.25972 3.28091 3.32795 3.38745 3.44119 3.49707 4.00367 4.34774 4.39417 4.43573 4.49883 4.64898 4.80528 4.85670 4.95799 4.98770 5.06486 5.17938 5.27506 5.32138 5.33631 5.45400 5.52076 5.56035 5.59458 5.66038 5.72358 5.82272 5.82702 5.90104 5.95684 6.18014 6.19218 6.37448 6.71402 6.74187 7.04129 7.63828 7.71748 7.87296 7.96573 8.28786 8.40000 8.97481 9.55598 11.07387 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.003111 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.658826 B = 8998.061614 C = 9867.515992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.149 3.851 4 C -0.138 4.138 5 C -0.154 4.154 6 N -0.270 5.270 7 N -0.223 5.223 8 C 0.001 3.999 9 C 0.547 3.453 10 O -0.512 6.512 11 O -0.341 6.341 12 C 0.075 3.925 13 C 0.025 3.975 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.177 4.177 23 C 0.003 3.997 24 C -0.082 4.082 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.162 0.838 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.473 12.020 -17.504 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C 0.049 3.951 4 C -0.176 4.176 5 C -0.212 4.212 6 N -0.061 5.061 7 N -0.060 5.060 8 C -0.157 4.157 9 C 0.389 3.611 10 O -0.399 6.399 11 O -0.256 6.256 12 C 0.002 3.998 13 C -0.012 4.012 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.204 4.204 23 C -0.120 4.120 24 C -0.140 4.140 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.180 0.820 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.947 11.476 -16.585 26.997 hybrid contribution 1.490 -0.016 -0.100 1.494 sum -16.457 11.459 -16.685 26.087 Atomic orbital electron populations 1.21797 0.94083 1.02757 1.02154 1.21897 0.96786 0.94332 1.04432 1.21797 0.73576 0.98883 1.00849 1.22003 1.02530 0.96356 0.96726 1.21783 1.01875 0.95406 1.02096 1.45748 1.07228 1.37248 1.15839 1.73732 1.00252 1.15597 1.16390 1.20902 0.90140 1.06881 0.97736 1.19610 0.86464 0.75473 0.79537 1.90808 1.27317 1.55620 1.66164 1.86669 1.39858 1.63937 1.35157 1.23682 0.81852 0.98323 0.95950 1.19161 0.98001 0.95183 0.88854 1.20994 0.92205 1.35181 1.07898 0.92231 1.24986 0.96511 0.95806 0.96898 1.69986 1.24300 1.39292 1.19294 0.86474 0.83276 0.78136 0.79430 1.20514 1.21101 1.19712 1.21455 0.95914 1.04826 0.98223 1.21350 0.91809 1.03824 0.95038 1.20334 1.00978 0.99089 0.93613 0.91848 0.92527 0.91706 0.91155 0.89626 0.87507 0.89410 0.89585 0.92698 0.91906 0.92664 0.92215 0.92227 0.95323 0.95315 0.92782 0.82048 0.90433 0.91331 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.14 -1.12 5.58 -26.73 -0.15 -1.27 16 3 C 0.15 1.24 2.41 -67.93 -0.16 1.07 16 4 C -0.14 -1.13 5.35 -26.73 -0.14 -1.27 16 5 C -0.15 -1.24 9.80 37.16 0.36 -0.88 16 6 N -0.27 -3.22 2.49 -50.66 -0.13 -3.35 16 7 N -0.22 -3.61 11.57 33.41 0.39 -3.23 16 8 C 0.00 0.02 7.17 -82.78 -0.59 -0.57 16 9 C 0.55 11.32 7.97 34.55 0.28 11.60 16 10 O -0.51 -11.24 16.72 -19.26 -0.32 -11.56 16 11 O -0.34 -7.78 10.23 -40.58 -0.42 -8.20 16 12 C 0.07 1.78 5.41 37.16 0.20 1.98 16 13 C 0.03 0.69 5.35 -27.88 -0.15 0.54 16 14 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 15 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 18 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.18 -2.44 10.73 -39.35 -0.42 -2.86 16 23 C 0.00 0.03 6.92 -82.21 -0.57 -0.54 16 24 C -0.08 -0.50 9.92 36.01 0.36 -0.15 16 25 H 0.06 0.32 6.46 -51.93 -0.34 -0.01 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.11 0.60 6.55 -51.93 -0.34 0.26 16 31 H 0.09 0.51 6.34 -51.93 -0.33 0.19 16 32 H 0.09 0.93 8.04 -51.93 -0.42 0.51 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.57 7.75 -51.93 -0.40 0.17 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.31 7.03 -51.93 -0.36 -0.05 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -34.12 369.97 -7.46 -41.58 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -7.23 Total: -4.66 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.04 Total: -6.73 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 1.00 Total: -32.89 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.74 Total: -19.75 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.12 -7.46 -41.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180278627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.474 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds