Wall clock time and date at job start Tue Mar 31 2020 07:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47231 * 2 1 4 4 C 1.53004 * 109.47135 * 64.99971 * 3 2 1 5 5 C 1.52995 * 109.47034 * 185.00138 * 4 3 2 6 6 N 1.46494 * 109.47147 * 185.00089 * 3 2 1 7 7 N 1.28473 * 124.87996 * 299.99970 * 6 3 2 8 8 C 1.31854 * 110.06020 * 180.02562 * 7 6 3 9 9 C 1.47590 * 126.51976 * 180.02562 * 8 7 6 10 10 O 1.21486 * 120.00072 * 179.97438 * 9 8 7 11 11 O 1.34731 * 119.99927 * 359.97438 * 9 8 7 12 12 C 1.45193 * 116.99724 * 180.02562 * 11 9 8 13 13 C 1.53007 * 109.47280 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47258 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00344 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99857 * 179.97438 * 14 13 12 17 17 N 1.31524 * 120.00168 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47161 * 89.99979 * 18 16 14 20 20 H 1.48499 * 109.47504 * 210.00322 * 18 16 14 21 21 H 1.48502 * 109.46911 * 330.00237 * 18 16 14 22 22 C 1.41543 * 106.95648 * 359.76760 * 8 7 6 23 23 C 1.35048 * 124.88196 * 119.99836 * 6 3 2 24 24 C 1.50703 * 126.37654 * 359.97438 * 23 6 3 25 25 H 1.09004 * 109.46794 * 300.00523 * 1 2 3 26 26 H 1.08998 * 109.47163 * 60.00027 * 1 2 3 27 27 H 1.09000 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46877 * 239.99877 * 2 1 3 29 29 H 1.08998 * 109.47163 * 119.99972 * 2 1 3 30 30 H 1.09001 * 109.47028 * 305.00065 * 3 2 1 31 31 H 1.08996 * 109.46697 * 305.00112 * 4 3 2 32 32 H 1.08999 * 109.46744 * 65.00144 * 4 3 2 33 33 H 1.09004 * 109.46920 * 59.99799 * 5 4 3 34 34 H 1.09000 * 109.47155 * 180.02562 * 5 4 3 35 35 H 1.08999 * 109.46969 * 300.00222 * 5 4 3 36 36 H 1.08999 * 109.47381 * 299.99583 * 12 11 9 37 37 H 1.08997 * 109.47906 * 59.99623 * 12 11 9 38 38 H 1.08999 * 109.46798 * 300.00215 * 13 12 11 39 39 H 1.09005 * 109.46741 * 59.99530 * 13 12 11 40 40 H 0.96997 * 120.00203 * 179.97438 * 17 16 14 41 41 H 1.08000 * 127.25188 * 180.27891 * 22 8 7 42 42 H 1.09002 * 109.47152 * 89.99935 * 24 23 6 43 43 H 1.09001 * 109.46980 * 330.00035 * 24 23 6 44 44 H 1.09004 * 109.47113 * 210.00016 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6353 2.1266 1.3074 5 6 2.0354 3.6024 1.2559 6 7 3.5000 1.4443 -0.1204 7 7 4.3066 0.8919 0.7132 8 6 5.5532 1.0709 0.3226 9 6 6.7668 0.5880 1.0098 10 8 7.8634 0.8215 0.5419 11 8 6.6586 -0.1119 2.1560 12 6 7.8940 -0.5546 2.7771 13 6 7.5727 -1.3264 4.0585 14 6 8.8549 -1.7864 4.7029 15 1 9.8042 -1.5514 4.2445 16 6 8.8163 -2.5064 5.8781 17 7 7.6603 -2.7921 6.4365 18 14 10.4057 -3.0760 6.6772 19 1 10.8859 -2.0351 7.6211 20 1 10.1625 -4.3406 7.4168 21 1 11.4323 -3.3053 5.6289 22 6 5.5058 1.8091 -0.8841 23 6 4.1916 2.0267 -1.1236 24 6 3.6083 2.7748 -2.2946 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6054 1.9816 -0.8418 31 1 0.5564 2.0471 1.4401 32 1 2.1409 1.6420 2.1426 33 1 1.5298 4.0870 0.4205 34 1 1.7475 4.0897 2.1874 35 1 3.1143 3.6819 1.1230 36 1 8.4351 -1.2030 2.0881 37 1 8.5096 0.3116 3.0198 38 1 7.0318 -0.6776 4.7474 39 1 6.9570 -2.1926 3.8162 40 1 7.6330 -3.2989 7.2631 41 1 6.3422 2.1318 -1.4864 42 1 3.5105 3.8300 -2.0394 43 1 2.6264 2.3665 -2.5339 44 1 4.2660 2.6691 -3.1574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180278627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:11 Heat of formation + Delta-G solvation = -55.855097 kcal Electronic energy + Delta-G solvation = -23526.786929 eV Core-core repulsion = 20058.471520 eV Total energy + Delta-G solvation = -3468.315409 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.88520 -41.23539 -38.03822 -37.62717 -35.47743 -33.82753 -32.90706 -32.66982 -32.19669 -28.06982 -28.04348 -26.92885 -25.21948 -23.82288 -22.99747 -22.18495 -21.94980 -20.49614 -18.74190 -18.28950 -17.89457 -17.75205 -17.20467 -17.00159 -16.49295 -15.84038 -15.27681 -15.24141 -14.90695 -14.63850 -14.55062 -14.41690 -14.09734 -13.76001 -13.61120 -13.22513 -13.16197 -13.06640 -12.99792 -12.80278 -12.63665 -12.60993 -12.50519 -12.08688 -12.06005 -11.95912 -11.73408 -11.61178 -11.55490 -11.53068 -11.43020 -10.63555 -10.20524 -9.95177 -8.28390 -6.42647 0.21948 1.03176 1.27171 1.40232 1.42647 1.54128 1.82193 2.03962 2.39309 3.05447 3.17417 3.58021 3.64689 3.70256 3.91024 3.97817 4.17313 4.18671 4.21490 4.33976 4.37329 4.39728 4.49232 4.52365 4.64097 4.67571 4.79953 4.80809 4.96356 4.99517 5.06662 5.08795 5.10371 5.16512 5.19532 5.25824 5.33549 5.40341 5.41269 5.43983 5.69866 5.88366 6.03228 6.54525 6.70582 6.92881 7.27097 8.84661 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.003111 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.658826 B = 8998.061614 C = 9867.515992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.141 3.859 4 C -0.136 4.136 5 C -0.152 4.152 6 N -0.259 5.259 7 N -0.255 5.255 8 C -0.037 4.037 9 C 0.545 3.455 10 O -0.531 6.531 11 O -0.357 6.357 12 C 0.089 3.911 13 C 0.033 3.967 14 C -0.551 4.551 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.978 3.022 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.193 4.193 23 C 0.026 3.974 24 C -0.082 4.082 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.151 0.849 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.268 0.732 41 H 0.172 0.828 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 13.366 -19.484 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.042 3.958 4 C -0.174 4.174 5 C -0.209 4.209 6 N -0.050 5.050 7 N -0.094 5.094 8 C -0.192 4.192 9 C 0.389 3.611 10 O -0.419 6.419 11 O -0.272 6.272 12 C 0.016 3.984 13 C -0.004 4.004 14 C -0.588 4.588 15 H 0.086 0.914 16 C -0.195 4.195 17 N -0.567 5.567 18 Si 0.801 3.199 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.220 4.220 23 C -0.098 4.098 24 C -0.140 4.140 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.168 0.832 31 H 0.136 0.864 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.077 0.923 41 H 0.190 0.810 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.322 12.831 -18.577 29.717 hybrid contribution 1.733 -0.386 0.457 1.833 sum -17.589 12.445 -18.121 28.153 Atomic orbital electron populations 1.21782 0.91569 1.03186 1.03670 1.21865 0.98871 0.93953 1.02555 1.22295 0.71489 0.99435 1.02559 1.22010 1.03925 0.96153 0.95333 1.21776 1.00238 0.95381 1.03487 1.46197 1.08277 1.35482 1.15001 1.73654 1.00408 1.17088 1.18206 1.20717 0.89479 1.09538 0.99479 1.20179 0.87776 0.74574 0.78572 1.90766 1.28352 1.56428 1.66399 1.86658 1.39093 1.64862 1.36612 1.23272 0.82381 0.98095 0.94661 1.18968 0.97279 0.94097 0.90070 1.21363 0.92736 1.35959 1.08763 0.91440 1.26035 1.00626 0.95479 0.97314 1.70119 1.26963 1.39756 1.19867 0.85251 0.78277 0.77868 0.78457 1.19404 1.20249 1.18586 1.21706 0.97900 1.05145 0.97262 1.22090 0.90726 1.01751 0.95204 1.20606 1.02315 0.99482 0.91586 0.91213 0.90012 0.91957 0.91590 0.93066 0.83158 0.86425 0.93317 0.89565 0.91922 0.95524 0.91831 0.91836 0.97825 0.97810 0.92288 0.81042 0.88405 0.88643 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.67 71.98 0.70 -0.55 16 2 C -0.13 -2.06 5.58 30.60 0.17 -1.89 16 3 C 0.14 2.01 2.41 45.00 0.11 2.12 16 4 C -0.14 -2.04 5.35 30.59 0.16 -1.87 16 5 C -0.15 -2.14 9.80 71.98 0.71 -1.43 16 6 N -0.26 -5.94 2.49 -314.19 -0.78 -6.72 16 7 N -0.26 -8.61 11.57 -48.22 -0.56 -9.17 16 8 C -0.04 -1.34 7.17 42.42 0.30 -1.04 16 9 C 0.54 23.86 7.97 70.29 0.56 24.42 16 10 O -0.53 -24.31 16.72 19.88 0.33 -23.98 16 11 O -0.36 -17.36 10.23 -56.41 -0.58 -17.93 16 12 C 0.09 4.48 5.41 71.98 0.39 4.87 16 13 C 0.03 1.93 5.35 29.85 0.16 2.09 16 14 C -0.55 -32.84 9.11 25.60 0.23 -32.61 16 15 H 0.07 3.83 7.74 -2.91 -0.02 3.80 16 16 C 0.00 0.25 5.46 84.65 0.46 0.71 16 17 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 18 Si 0.98 45.11 29.54 68.60 2.03 47.13 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C -0.19 -5.26 10.73 22.42 0.24 -5.02 16 23 C 0.03 0.52 6.92 41.40 0.29 0.81 16 24 C -0.08 -0.63 9.92 71.24 0.71 0.08 16 25 H 0.07 0.52 6.46 -2.38 -0.02 0.51 16 26 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.15 0.89 6.55 -2.39 -0.02 0.88 16 31 H 0.12 1.05 6.34 -2.39 -0.02 1.03 16 32 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 33 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.03 0.52 7.75 -2.39 -0.02 0.50 16 36 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 40 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 41 H 0.17 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.29 7.03 -2.39 -0.02 0.27 16 44 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -78.96 369.97 6.88 -72.08 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: 0.97 Total: 5.39 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 5.19 Total: -9.33 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.06 Total: -73.37 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.24 Total: -41.91 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -78.96 6.88 -72.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180278627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.225 kcal (2) G-P(sol) polarization free energy of solvation -78.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds