Wall clock time and date at job start Tue Mar 31 2020 07:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47304 * 2 1 4 4 H 1.08995 * 109.47784 * 304.97358 * 3 2 1 5 5 C 1.53085 * 109.48176 * 184.94091 * 3 2 1 6 6 C 1.53181 * 109.16500 * 182.40725 * 5 3 2 7 7 H 1.08998 * 109.61292 * 297.07066 * 6 5 3 8 8 C 1.50700 * 109.54331 * 176.84600 * 6 5 3 9 9 O 1.21276 * 120.00135 * 326.22704 * 8 6 5 10 10 N 1.34777 * 119.99491 * 146.22271 * 8 6 5 11 11 C 1.46498 * 120.00223 * 4.15025 * 10 8 6 12 12 C 1.50708 * 109.47316 * 84.39382 * 11 10 8 13 13 H 1.08003 * 119.99391 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00272 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99729 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00045 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46948 * 90.00655 * 16 14 12 18 18 H 1.48508 * 109.46995 * 210.00160 * 16 14 12 19 19 H 1.48494 * 109.47030 * 330.00423 * 16 14 12 20 20 C 1.46504 * 119.99843 * 184.14345 * 10 8 6 21 21 C 1.53005 * 109.46627 * 84.96764 * 20 10 8 22 22 C 1.47200 * 109.46862 * 183.21283 * 21 20 10 23 23 N 9.83845 * 158.36256 * 322.19290 * 2 1 3 24 24 C 1.53177 * 109.03454 * 56.98046 * 6 5 3 25 25 C 1.53100 * 109.16053 * 303.02080 * 24 6 5 26 26 O 1.42899 * 109.41677 * 57.61132 * 25 24 6 27 27 H 1.09005 * 109.46586 * 60.00267 * 1 2 3 28 28 H 1.08998 * 109.46944 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47349 * 300.00491 * 1 2 3 30 30 H 1.09003 * 109.47072 * 119.99596 * 2 1 3 31 31 H 1.08997 * 109.47349 * 239.99509 * 2 1 3 32 32 H 1.08999 * 109.52334 * 302.31462 * 5 3 2 33 33 H 1.09006 * 109.52581 * 62.49881 * 5 3 2 34 34 H 1.09001 * 109.47373 * 204.39429 * 11 10 8 35 35 H 1.09000 * 109.47386 * 324.39726 * 11 10 8 36 36 H 0.97003 * 119.99881 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.47061 * 204.96211 * 20 10 8 38 38 H 1.08993 * 109.46868 * 324.97075 * 20 10 8 39 39 H 1.09003 * 109.46757 * 303.20804 * 21 20 10 40 40 H 1.08995 * 109.47287 * 63.21029 * 21 20 10 41 41 H 1.08993 * 109.51970 * 183.11942 * 24 6 5 42 42 H 1.08991 * 109.57622 * 62.95720 * 24 6 5 43 43 H 1.08997 * 109.48033 * 297.62078 * 25 24 6 44 44 H 1.09004 * 109.48403 * 177.59941 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5659 1.4445 -0.1243 6 6 4.0735 2.8885 -0.0631 7 1 3.6814 3.4504 -0.9107 8 6 5.5798 2.8956 -0.1068 9 8 6.2058 1.9959 0.4123 10 7 6.2313 3.9018 -0.7230 11 6 5.4800 5.0341 -1.2706 12 6 5.2252 6.0424 -0.1799 13 1 5.5871 5.8584 0.8209 14 6 4.5311 7.2003 -0.4600 15 7 4.0909 7.4245 -1.6788 16 14 4.2146 8.4498 0.8921 17 1 5.3331 9.4257 0.9358 18 1 2.9432 9.1660 0.6165 19 1 4.1160 7.7510 2.1986 20 6 7.6907 3.8633 -0.8451 21 6 8.0776 3.0500 -2.0820 22 6 9.5438 2.9462 -2.1620 23 7 10.6752 2.8662 -2.2238 24 6 3.5958 3.5310 1.2428 25 6 2.0687 3.4484 1.3142 26 8 1.6620 2.0816 1.2209 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.9989 0.8712 0.6953 33 1 3.8545 0.9970 -1.0754 34 1 6.0567 5.5006 -2.0692 35 1 4.5286 4.6807 -1.6681 36 1 3.6022 8.2390 -1.8758 37 1 8.0740 4.8789 -0.9436 38 1 8.1175 3.3983 0.0435 39 1 7.6461 2.0516 -2.0099 40 1 7.6991 3.5458 -2.9758 41 1 3.9056 4.5756 1.2693 42 1 4.0293 3.0008 2.0906 43 1 1.6351 4.0138 0.4895 44 1 1.7259 3.8658 2.2610 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180635960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:04 Heat of formation + Delta-G solvation = -93.357123 kcal Electronic energy + Delta-G solvation = -24628.204641 eV Core-core repulsion = 21158.263022 eV Total energy + Delta-G solvation = -3469.941619 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.39031 -39.77117 -37.92822 -36.75642 -35.03174 -34.75739 -34.37907 -32.36371 -30.66209 -28.96552 -27.24033 -25.14675 -24.91393 -24.29489 -22.40155 -21.39457 -19.69907 -18.73642 -18.30011 -17.99873 -17.30330 -17.23341 -16.54131 -16.24953 -15.91635 -15.70527 -15.46554 -14.89120 -14.71401 -14.54318 -14.46614 -14.27779 -14.05775 -13.67646 -13.60464 -13.54713 -13.32918 -12.95182 -12.72907 -12.68727 -12.63905 -12.57780 -12.14470 -12.10200 -11.95327 -11.78001 -11.69491 -11.60657 -11.43905 -11.21265 -10.76287 -10.49580 -10.18571 -9.48725 -8.14268 -6.24255 1.43734 1.49602 1.55103 1.59624 1.76505 1.81361 2.27168 2.47332 2.92631 3.14810 3.18574 3.67589 3.83358 3.91729 4.04178 4.11732 4.13047 4.27680 4.32911 4.46120 4.50189 4.52730 4.55233 4.63405 4.79487 4.83568 4.88997 4.95511 4.99024 5.02363 5.02777 5.17938 5.18645 5.25082 5.29707 5.37504 5.44869 5.53508 5.72171 5.89277 6.14711 6.38611 6.52651 6.58064 6.88591 7.35303 7.48007 8.91142 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009216 B = 0.006460 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.586306 B = 4333.287386 C = 6774.082003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.089 3.911 4 H 0.063 0.937 5 C -0.125 4.125 6 C -0.099 4.099 7 H 0.096 0.904 8 C 0.525 3.475 9 O -0.588 6.588 10 N -0.595 5.595 11 C 0.248 3.752 12 C -0.534 4.534 13 H 0.052 0.948 14 C 0.033 3.967 15 N -0.915 5.915 16 Si 0.937 3.063 17 H -0.282 1.282 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.121 3.879 21 C -0.030 4.030 22 C 0.244 3.756 23 N -0.489 5.489 24 C -0.141 4.141 25 C 0.070 3.930 26 O -0.390 6.390 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -9.337 -0.331 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C 0.032 3.968 4 H 0.081 0.919 5 C -0.163 4.163 6 C -0.120 4.120 7 H 0.114 0.886 8 C 0.314 3.686 9 O -0.470 6.470 10 N -0.324 5.324 11 C 0.127 3.873 12 C -0.573 4.573 13 H 0.071 0.929 14 C -0.168 4.168 15 N -0.554 5.554 16 Si 0.763 3.237 17 H -0.209 1.209 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.004 4.004 21 C -0.071 4.071 22 C -0.073 4.073 23 N -0.168 5.168 24 C -0.179 4.179 25 C -0.006 4.006 26 O -0.310 6.310 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.136 0.864 40 H 0.152 0.848 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.678 -9.861 -0.137 10.915 hybrid contribution -0.149 1.444 0.511 1.539 sum -4.827 -8.417 0.374 9.710 Atomic orbital electron populations 1.21693 0.94707 1.02086 1.01872 1.21558 0.97056 0.93121 1.03266 1.22267 0.92539 0.95057 0.86958 0.91938 1.22059 0.96428 0.94454 1.03372 1.21265 0.91379 0.98612 1.00776 0.88591 1.20744 0.90687 0.80636 0.76510 1.90588 1.69931 1.38658 1.47845 1.48177 1.06535 1.21610 1.56087 1.19258 0.91877 0.82390 0.93729 1.21603 1.35393 1.03952 0.96326 0.92949 1.25394 0.95422 0.99188 0.96834 1.69968 1.38104 1.27155 1.20179 0.85878 0.77472 0.79787 0.80526 1.20861 1.20963 1.19351 1.21192 0.81132 1.01085 0.96945 1.19710 0.80668 1.04676 1.02014 1.29238 0.95103 0.91404 0.91525 1.81204 1.14207 1.10848 1.10498 1.22097 0.97600 1.02510 0.95664 1.22523 0.92530 0.82707 1.02872 1.87861 1.78570 1.25090 1.39440 0.92507 0.91491 0.93246 0.91699 0.88987 0.91657 0.89849 0.94697 0.94446 0.92504 0.89191 0.91215 0.86417 0.84763 0.89777 0.92579 0.92743 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.81 71.98 0.71 -1.94 16 2 C -0.11 -2.25 5.64 30.60 0.17 -2.08 16 3 C 0.09 2.23 2.64 30.62 0.08 2.31 16 4 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.12 -3.48 4.40 30.68 0.14 -3.34 16 6 C -0.10 -3.23 2.06 -11.42 -0.02 -3.25 16 7 H 0.10 3.21 5.84 -2.39 -0.01 3.20 16 8 C 0.52 18.84 6.61 87.66 0.58 19.42 16 9 O -0.59 -23.40 15.83 -3.02 -0.05 -23.45 16 10 N -0.59 -20.71 2.48 -826.15 -2.05 -22.76 16 11 C 0.25 9.89 4.94 85.64 0.42 10.31 16 12 C -0.53 -24.25 7.59 25.60 0.19 -24.06 16 13 H 0.05 2.47 7.46 -2.91 -0.02 2.45 16 14 C 0.03 1.54 5.46 84.65 0.46 2.00 16 15 N -0.91 -45.65 13.29 21.45 0.28 -45.37 16 16 Si 0.94 38.70 29.54 68.60 2.03 40.73 16 17 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 20 C 0.12 3.62 5.32 86.38 0.46 4.08 16 21 C -0.03 -0.68 5.99 28.79 0.17 -0.51 16 22 C 0.24 6.57 15.43 89.44 1.38 7.95 16 23 N -0.49 -15.73 18.54 20.00 0.37 -15.36 16 24 C -0.14 -4.68 5.41 30.69 0.17 -4.51 16 25 C 0.07 2.03 6.84 72.02 0.49 2.52 16 26 O -0.39 -11.20 9.94 -148.98 -1.48 -12.68 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.02 7.82 -2.39 -0.02 1.00 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 2.03 7.76 -2.39 -0.02 2.01 16 33 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.03 1.44 8.03 -2.39 -0.02 1.42 16 35 H 0.04 1.55 5.91 -2.39 -0.01 1.53 16 36 H 0.27 12.82 8.31 -92.71 -0.77 12.05 16 37 H 0.09 2.66 8.03 -2.39 -0.02 2.64 16 38 H 0.07 2.22 7.52 -2.39 -0.02 2.21 16 39 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.08 3.17 5.87 -2.39 -0.01 3.16 16 42 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -56.44 361.21 5.48 -50.96 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.98 Total: 19.02 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.40 Total: 8.91 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -1.39 Total: -83.49 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.53 Total: -36.12 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -56.44 5.48 -50.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180635960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.396 kcal (2) G-P(sol) polarization free energy of solvation -56.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds