Wall clock time and date at job start Tue Mar 31 2020 07:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 H 1.09006 * 109.47657 * 55.02581 * 3 2 1 5 5 C 1.53099 * 109.48218 * 175.05473 * 3 2 1 6 6 C 1.53173 * 109.16281 * 177.59050 * 5 3 2 7 7 H 1.09003 * 109.61471 * 183.10767 * 6 5 3 8 8 C 1.50703 * 109.54049 * 62.89303 * 6 5 3 9 9 O 1.21283 * 120.00028 * 343.04121 * 8 6 5 10 10 N 1.34778 * 119.99973 * 163.03949 * 8 6 5 11 11 C 1.46502 * 119.99910 * 4.73495 * 10 8 6 12 12 C 1.50699 * 109.46689 * 264.74903 * 11 10 8 13 13 H 1.08001 * 120.00184 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99830 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46844 * 89.99676 * 16 14 12 18 18 H 1.48492 * 109.46996 * 210.00066 * 16 14 12 19 19 H 1.48501 * 109.46601 * 330.00119 * 16 14 12 20 20 C 1.46508 * 119.99848 * 184.73331 * 10 8 6 21 21 C 1.52999 * 109.46922 * 271.13142 * 20 10 8 22 22 C 1.47198 * 109.46988 * 180.02562 * 21 20 10 23 23 N 8.96796 * 90.81947 * 30.54871 * 2 1 3 24 24 C 1.53170 * 109.03989 * 303.02499 * 6 5 3 25 25 C 1.53094 * 109.16407 * 56.98132 * 24 6 5 26 26 O 1.42902 * 109.41322 * 302.38711 * 25 24 6 27 27 H 1.09000 * 109.46710 * 300.00216 * 1 2 3 28 28 H 1.08999 * 109.46725 * 59.99165 * 1 2 3 29 29 H 1.08987 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46979 * 240.00155 * 2 1 3 31 31 H 1.09003 * 109.47398 * 120.00211 * 2 1 3 32 32 H 1.09002 * 109.51702 * 57.68979 * 5 3 2 33 33 H 1.08995 * 109.52440 * 297.50298 * 5 3 2 34 34 H 1.08995 * 109.47151 * 24.74652 * 11 10 8 35 35 H 1.08994 * 109.47124 * 144.75591 * 11 10 8 36 36 H 0.97001 * 119.99748 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.46515 * 151.13574 * 20 10 8 38 38 H 1.08993 * 109.46728 * 31.13507 * 20 10 8 39 39 H 1.09006 * 109.47156 * 60.00456 * 21 20 10 40 40 H 1.08999 * 109.47265 * 300.00261 * 21 20 10 41 41 H 1.09004 * 109.52301 * 176.88060 * 24 6 5 42 42 H 1.08997 * 109.52245 * 297.01005 * 24 6 5 43 43 H 1.08997 * 109.48307 * 62.37579 * 25 24 6 44 44 H 1.08998 * 109.48021 * 182.39756 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 0.8421 5 6 3.5660 1.4445 0.1244 6 6 4.0736 2.8884 0.0631 7 1 5.1631 2.8949 0.0956 8 6 3.5297 3.6640 1.2352 9 8 2.5839 3.2339 1.8607 10 7 4.0944 4.8358 1.5882 11 6 5.1686 5.4066 0.7718 12 6 6.5030 5.0084 1.3478 13 1 6.5465 4.3914 2.2332 14 6 7.6682 5.4317 0.7445 15 7 7.6152 6.1825 -0.3339 16 14 9.3224 4.9375 1.4581 17 1 9.7631 3.6581 0.8462 18 1 10.3228 5.9957 1.1676 19 1 9.1960 4.7656 2.9277 20 6 3.6339 5.5386 2.7884 21 6 2.4779 6.4712 2.4212 22 6 2.0157 7.1778 3.6269 23 7 1.6583 7.7224 4.5577 24 6 3.5959 3.5309 -1.2427 25 6 2.0689 3.4484 -1.3142 26 8 1.6622 2.0817 -1.2210 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0275 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.9990 0.8711 -0.6953 33 1 3.8545 0.9970 1.0754 34 1 5.0872 5.0327 -0.2487 35 1 5.0841 6.4933 0.7685 36 1 8.4350 6.4806 -0.7581 37 1 4.4544 6.1233 3.2042 38 1 3.2945 4.8124 3.5268 39 1 1.6573 5.8865 2.0053 40 1 2.8174 7.1974 1.6827 41 1 3.9058 4.5757 -1.2692 42 1 4.0304 3.0004 -2.0899 43 1 1.6352 4.0138 -0.4894 44 1 1.7262 3.8660 -2.2609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180635981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:08 Heat of formation + Delta-G solvation = -72.749821 kcal Electronic energy + Delta-G solvation = -24970.434724 eV Core-core repulsion = 21501.386705 eV Total energy + Delta-G solvation = -3469.048019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40484 -38.17977 -36.63714 -35.31529 -33.88846 -33.44890 -32.78907 -31.00825 -29.55885 -27.31215 -25.78621 -24.11284 -23.22595 -23.12837 -21.15032 -20.61391 -18.12517 -17.50717 -16.65957 -16.41897 -16.11668 -15.79755 -15.36033 -14.71717 -14.66219 -14.45459 -14.15093 -13.74622 -13.54565 -13.34544 -13.06498 -12.83496 -12.66488 -12.44840 -12.22358 -12.04041 -11.78920 -11.75372 -11.62476 -11.46404 -11.24368 -11.08135 -10.95311 -10.80408 -10.68024 -10.65194 -10.34034 -10.24660 -10.06873 -9.84491 -9.25976 -8.69787 -8.57310 -7.96480 -6.29601 -4.36949 2.82441 2.92738 3.16145 3.17528 3.24722 3.28543 3.63900 4.09601 4.24097 4.34416 4.89582 5.03308 5.06176 5.17390 5.18908 5.26226 5.30804 5.36171 5.38517 5.51979 5.62257 5.65250 5.76354 5.84818 5.94389 6.00679 6.04193 6.06928 6.14799 6.20514 6.21625 6.30570 6.36092 6.38783 6.48065 6.53470 6.68649 7.06032 7.34457 7.60105 7.64346 7.68755 7.92001 8.14341 8.65508 8.82800 9.31709 10.77105 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.005924 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.968712 B = 4725.612298 C = 6457.527665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.072 3.928 4 H 0.102 0.898 5 C -0.126 4.126 6 C -0.109 4.109 7 H 0.113 0.887 8 C 0.523 3.477 9 O -0.566 6.566 10 N -0.592 5.592 11 C 0.227 3.773 12 C -0.542 4.542 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.126 3.874 21 C -0.045 4.045 22 C 0.221 3.779 23 N -0.450 5.450 24 C -0.147 4.147 25 C 0.063 3.937 26 O -0.384 6.384 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.037 0.963 36 H 0.266 0.734 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.227 -6.300 -2.942 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.015 3.985 4 H 0.119 0.881 5 C -0.164 4.164 6 C -0.130 4.130 7 H 0.131 0.869 8 C 0.313 3.687 9 O -0.448 6.448 10 N -0.322 5.322 11 C 0.108 3.892 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.198 1.198 20 C 0.001 3.999 21 C -0.087 4.087 22 C -0.097 4.097 23 N -0.128 5.128 24 C -0.185 4.185 25 C -0.014 4.014 26 O -0.304 6.304 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.207 -5.678 -1.513 10.922 hybrid contribution 1.654 -0.132 0.086 1.661 sum -7.553 -5.810 -1.427 9.635 Atomic orbital electron populations 1.21689 0.95718 1.00792 1.02215 1.21526 0.96346 0.95370 1.01930 1.22667 0.93666 0.93725 0.88478 0.88104 1.21989 0.96847 0.95189 1.02391 1.21323 1.03565 0.94698 0.93378 0.86853 1.20554 0.82192 0.80849 0.85153 1.90490 1.28737 1.69478 1.56075 1.48242 1.36969 1.20859 1.26116 1.19719 0.83614 0.94818 0.91094 1.21464 0.90445 1.33222 1.12960 0.92030 1.24913 0.99321 0.94606 0.94747 1.69898 1.28733 1.34705 1.19353 0.86539 0.83250 0.78371 0.79613 1.20437 1.21054 1.19798 1.21112 0.95189 0.94913 0.88703 1.19779 1.00714 0.98452 0.89717 1.29122 0.92929 0.93133 0.94512 1.81178 1.09738 1.10426 1.11441 1.22255 0.96635 1.02898 0.96714 1.22518 0.93840 0.83528 1.01486 1.87809 1.78752 1.24412 1.39401 0.92916 0.92181 0.93390 0.91908 0.91087 0.91223 0.91028 0.92929 0.94508 0.92405 0.89242 0.90257 0.87359 0.87091 0.89198 0.90378 0.93387 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 37.16 0.36 -1.32 16 2 C -0.11 -1.42 5.64 -26.73 -0.15 -1.57 16 3 C 0.07 1.05 2.35 -26.68 -0.06 0.99 16 4 H 0.10 1.69 5.27 -51.93 -0.27 1.42 16 5 C -0.13 -1.86 4.68 -26.59 -0.12 -1.99 16 6 C -0.11 -1.76 2.19 -91.59 -0.20 -1.96 16 7 H 0.11 2.04 7.24 -51.93 -0.38 1.66 16 8 C 0.52 9.10 5.75 -10.98 -0.06 9.04 16 9 O -0.57 -10.43 12.98 5.55 0.07 -10.36 16 10 N -0.59 -10.33 2.46 -175.06 -0.43 -10.77 16 11 C 0.23 4.59 4.70 -5.19 -0.02 4.57 16 12 C -0.54 -12.72 9.09 -34.44 -0.31 -13.03 16 13 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 14 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -22.64 13.29 55.43 0.74 -21.91 16 16 Si 0.89 19.40 29.54 -169.99 -5.02 14.38 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 C 0.13 1.94 5.33 -4.04 -0.02 1.91 16 21 C -0.05 -0.57 6.02 -29.52 -0.18 -0.75 16 22 C 0.22 3.14 15.43 -20.76 -0.32 2.82 16 23 N -0.45 -7.46 18.54 42.15 0.78 -6.68 16 24 C -0.15 -2.15 5.29 -26.60 -0.14 -2.29 16 25 C 0.06 0.88 6.62 37.21 0.25 1.13 16 26 O -0.38 -5.81 9.94 -35.23 -0.35 -6.16 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 29 H 0.05 0.47 8.14 -51.94 -0.42 0.04 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 1.08 4.31 -51.93 -0.22 0.86 16 35 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 38 H 0.08 1.25 7.53 -51.93 -0.39 0.86 16 39 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.36 5.87 -51.93 -0.30 1.06 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.70 7.29 -51.93 -0.38 0.32 16 44 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -26.84 355.47 -6.91 -33.74 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -6.97 Total: 3.28 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.09 Total: -0.90 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 1.09 Total: -39.35 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.28 Total: -16.51 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.84 -6.91 -33.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180635981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.007 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds