Wall clock time and date at job start Tue Mar 31 2020 07:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47417 * 2 1 4 4 H 1.09006 * 109.47657 * 55.02581 * 3 2 1 5 5 C 1.53099 * 109.48218 * 175.05473 * 3 2 1 6 6 C 1.53173 * 109.16281 * 177.59050 * 5 3 2 7 7 H 1.09003 * 109.61471 * 183.10767 * 6 5 3 8 8 C 1.50703 * 109.54049 * 62.89303 * 6 5 3 9 9 O 1.21283 * 120.00028 * 343.04121 * 8 6 5 10 10 N 1.34778 * 119.99973 * 163.03949 * 8 6 5 11 11 C 1.46502 * 119.99910 * 4.73495 * 10 8 6 12 12 C 1.50699 * 109.46689 * 264.74903 * 11 10 8 13 13 H 1.08001 * 120.00184 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99830 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 120.00210 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46844 * 89.99676 * 16 14 12 18 18 H 1.48492 * 109.46996 * 210.00066 * 16 14 12 19 19 H 1.48501 * 109.46601 * 330.00119 * 16 14 12 20 20 C 1.46508 * 119.99848 * 184.73331 * 10 8 6 21 21 C 1.52999 * 109.46922 * 271.13142 * 20 10 8 22 22 C 1.47198 * 109.46988 * 180.02562 * 21 20 10 23 23 N 8.96796 * 90.81947 * 30.54871 * 2 1 3 24 24 C 1.53170 * 109.03989 * 303.02499 * 6 5 3 25 25 C 1.53094 * 109.16407 * 56.98132 * 24 6 5 26 26 O 1.42902 * 109.41322 * 302.38711 * 25 24 6 27 27 H 1.09000 * 109.46710 * 300.00216 * 1 2 3 28 28 H 1.08999 * 109.46725 * 59.99165 * 1 2 3 29 29 H 1.08987 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46979 * 240.00155 * 2 1 3 31 31 H 1.09003 * 109.47398 * 120.00211 * 2 1 3 32 32 H 1.09002 * 109.51702 * 57.68979 * 5 3 2 33 33 H 1.08995 * 109.52440 * 297.50298 * 5 3 2 34 34 H 1.08995 * 109.47151 * 24.74652 * 11 10 8 35 35 H 1.08994 * 109.47124 * 144.75591 * 11 10 8 36 36 H 0.97001 * 119.99748 * 179.97438 * 15 14 12 37 37 H 1.08994 * 109.46515 * 151.13574 * 20 10 8 38 38 H 1.08993 * 109.46728 * 31.13507 * 20 10 8 39 39 H 1.09006 * 109.47156 * 60.00456 * 21 20 10 40 40 H 1.08999 * 109.47265 * 300.00261 * 21 20 10 41 41 H 1.09004 * 109.52301 * 176.88060 * 24 6 5 42 42 H 1.08997 * 109.52245 * 297.01005 * 24 6 5 43 43 H 1.08997 * 109.48307 * 62.37579 * 25 24 6 44 44 H 1.08998 * 109.48021 * 182.39756 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6059 1.9815 0.8421 5 6 3.5660 1.4445 0.1244 6 6 4.0736 2.8884 0.0631 7 1 5.1631 2.8949 0.0956 8 6 3.5297 3.6640 1.2352 9 8 2.5839 3.2339 1.8607 10 7 4.0944 4.8358 1.5882 11 6 5.1686 5.4066 0.7718 12 6 6.5030 5.0084 1.3478 13 1 6.5465 4.3914 2.2332 14 6 7.6682 5.4317 0.7445 15 7 7.6152 6.1825 -0.3339 16 14 9.3224 4.9375 1.4581 17 1 9.7631 3.6581 0.8462 18 1 10.3228 5.9957 1.1676 19 1 9.1960 4.7656 2.9277 20 6 3.6339 5.5386 2.7884 21 6 2.4779 6.4712 2.4212 22 6 2.0157 7.1778 3.6269 23 7 1.6583 7.7224 4.5577 24 6 3.5959 3.5309 -1.2427 25 6 2.0689 3.4484 -1.3142 26 8 1.6622 2.0817 -1.2210 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0275 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.9990 0.8711 -0.6953 33 1 3.8545 0.9970 1.0754 34 1 5.0872 5.0327 -0.2487 35 1 5.0841 6.4933 0.7685 36 1 8.4350 6.4806 -0.7581 37 1 4.4544 6.1233 3.2042 38 1 3.2945 4.8124 3.5268 39 1 1.6573 5.8865 2.0053 40 1 2.8174 7.1974 1.6827 41 1 3.9058 4.5757 -1.2692 42 1 4.0304 3.0004 -2.0899 43 1 1.6352 4.0138 -0.4894 44 1 1.7262 3.8660 -2.2609 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180635981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:07 Heat of formation + Delta-G solvation = -85.950108 kcal Electronic energy + Delta-G solvation = -24971.007132 eV Core-core repulsion = 21501.386705 eV Total energy + Delta-G solvation = -3469.620426 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71572 -39.43351 -37.88006 -36.77615 -35.01600 -34.75113 -34.39762 -32.31840 -30.64589 -29.01020 -26.98085 -25.39333 -24.74262 -24.36984 -22.28613 -21.81263 -19.53048 -18.81520 -18.33740 -17.75804 -17.26461 -17.06202 -16.76191 -16.20937 -15.95833 -15.79647 -15.33553 -14.97523 -14.62480 -14.54604 -14.34804 -14.22868 -13.92432 -13.76747 -13.58814 -13.38890 -13.14924 -13.07379 -12.88879 -12.73955 -12.69329 -12.49467 -12.33360 -12.11415 -11.94617 -11.79947 -11.73271 -11.57446 -11.49123 -11.26483 -10.61697 -10.39702 -9.90854 -9.46734 -8.15710 -6.27089 1.43147 1.47877 1.54069 1.60829 1.76532 1.81136 2.28646 2.46481 2.99454 3.14551 3.17677 3.67570 3.82463 3.95887 4.06119 4.10644 4.14071 4.24402 4.38727 4.40416 4.53050 4.54999 4.66581 4.73000 4.82897 4.83534 4.91394 4.99229 5.02225 5.04442 5.08899 5.13178 5.17853 5.21749 5.25319 5.41761 5.43119 5.53611 5.72889 5.88058 6.13283 6.45885 6.52965 6.62087 6.87130 7.35374 7.47086 8.89227 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.005924 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.968712 B = 4725.612298 C = 6457.527665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.074 3.926 4 H 0.081 0.919 5 C -0.123 4.123 6 C -0.110 4.110 7 H 0.093 0.907 8 C 0.523 3.477 9 O -0.575 6.575 10 N -0.593 5.593 11 C 0.240 3.760 12 C -0.545 4.545 13 H 0.051 0.949 14 C 0.029 3.971 15 N -0.914 5.914 16 Si 0.943 3.057 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.124 3.876 21 C -0.030 4.030 22 C 0.244 3.756 23 N -0.489 5.489 24 C -0.141 4.141 25 C 0.064 3.936 26 O -0.390 6.390 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.040 0.960 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.683 -7.043 -3.545 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.017 3.983 4 H 0.098 0.902 5 C -0.161 4.161 6 C -0.131 4.131 7 H 0.111 0.889 8 C 0.313 3.687 9 O -0.457 6.457 10 N -0.322 5.322 11 C 0.120 3.880 12 C -0.584 4.584 13 H 0.069 0.931 14 C -0.172 4.172 15 N -0.553 5.553 16 Si 0.770 3.230 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.001 4.001 21 C -0.071 4.071 22 C -0.073 4.073 23 N -0.168 5.168 24 C -0.179 4.179 25 C -0.012 4.012 26 O -0.309 6.309 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.148 0.852 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.673 -6.427 -2.102 11.802 hybrid contribution 1.788 0.070 0.295 1.814 sum -7.885 -6.358 -1.807 10.288 Atomic orbital electron populations 1.21658 0.95019 1.01861 1.01550 1.21548 0.96969 0.93876 1.02686 1.22613 0.93234 0.94819 0.87683 0.90189 1.21991 0.97194 0.94282 1.02678 1.21326 1.02238 0.95728 0.93795 0.88882 1.20755 0.81974 0.80674 0.85315 1.90501 1.29146 1.69578 1.56456 1.48148 1.36452 1.21181 1.26427 1.19418 0.83080 0.94289 0.91262 1.21706 0.91981 1.32380 1.12340 0.93114 1.25461 1.01772 0.94867 0.95123 1.69963 1.29235 1.35827 1.20313 0.85780 0.80444 0.77992 0.78793 1.20204 1.21099 1.19981 1.21160 0.95966 0.95113 0.87888 1.19705 0.99916 0.98237 0.89256 1.29250 0.91812 0.92161 0.94065 1.81205 1.11116 1.11871 1.12562 1.22210 0.97318 1.02368 0.96008 1.22592 0.93072 0.83134 1.02448 1.87812 1.78817 1.24881 1.39431 0.93492 0.92902 0.91483 0.91204 0.90243 0.90039 0.91404 0.92910 0.95155 0.92466 0.89774 0.90700 0.86207 0.85238 0.89820 0.89588 0.94177 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.81 71.98 0.71 -2.33 16 2 C -0.11 -2.60 5.64 30.59 0.17 -2.43 16 3 C 0.07 2.06 2.35 30.63 0.07 2.13 16 4 H 0.08 2.61 5.27 -2.38 -0.01 2.60 16 5 C -0.12 -3.52 4.68 30.69 0.14 -3.38 16 6 C -0.11 -3.48 2.19 -11.42 -0.03 -3.51 16 7 H 0.09 3.34 7.24 -2.39 -0.02 3.32 16 8 C 0.52 17.87 5.75 87.66 0.50 18.38 16 9 O -0.57 -20.76 12.98 -3.04 -0.04 -20.80 16 10 N -0.59 -20.32 2.46 -826.16 -2.03 -22.35 16 11 C 0.24 9.62 4.70 85.63 0.40 10.02 16 12 C -0.55 -25.46 9.09 25.60 0.23 -25.22 16 13 H 0.05 2.44 7.81 -2.91 -0.02 2.42 16 14 C 0.03 1.39 5.46 84.65 0.46 1.85 16 15 N -0.91 -46.29 13.29 21.45 0.28 -46.00 16 16 Si 0.94 39.48 29.54 68.60 2.03 41.51 16 17 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.29 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 20 C 0.12 3.69 5.33 86.38 0.46 4.15 16 21 C -0.03 -0.71 6.02 28.79 0.17 -0.53 16 22 C 0.24 6.66 15.43 89.44 1.38 8.04 16 23 N -0.49 -15.87 18.54 20.01 0.37 -15.50 16 24 C -0.14 -3.96 5.29 30.68 0.16 -3.80 16 25 C 0.06 1.68 6.62 72.01 0.48 2.15 16 26 O -0.39 -11.11 9.94 -148.98 -1.48 -12.59 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 1.19 7.82 -2.39 -0.02 1.17 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 2.15 4.31 -2.39 -0.01 2.14 16 35 H 0.03 1.27 8.11 -2.39 -0.02 1.25 16 36 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 37 H 0.08 2.60 8.06 -2.39 -0.02 2.58 16 38 H 0.07 2.31 7.53 -2.39 -0.02 2.29 16 39 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 40 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.08 2.46 5.87 -2.38 -0.01 2.44 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.11 7.29 -2.39 -0.02 1.10 16 44 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -55.57 355.47 5.44 -50.13 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.99 Total: 20.09 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.32 Total: 5.52 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.37 Total: -83.86 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -1.52 Total: -33.39 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -55.57 5.44 -50.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180635981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.822 kcal (2) G-P(sol) polarization free energy of solvation -55.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds