Wall clock time and date at job start Tue Mar 31 2020 07:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47213 * 2 1 4 4 H 1.08991 * 109.49163 * 304.97499 * 3 2 1 5 5 C 1.53093 * 109.48040 * 184.94262 * 3 2 1 6 6 C 1.53176 * 109.16223 * 182.41171 * 5 3 2 7 7 H 1.08997 * 109.61521 * 176.88862 * 6 5 3 8 8 C 1.50701 * 109.54316 * 297.11666 * 6 5 3 9 9 O 1.21274 * 119.99977 * 10.19698 * 8 6 5 10 10 N 1.34772 * 119.99666 * 190.19982 * 8 6 5 11 11 C 1.46504 * 120.00574 * 6.31226 * 10 8 6 12 12 C 1.50700 * 109.47169 * 84.55544 * 11 10 8 13 13 H 1.08004 * 119.99736 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99924 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00079 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47011 * 89.99796 * 16 14 12 18 18 H 1.48504 * 109.46999 * 209.99688 * 16 14 12 19 19 H 1.48501 * 109.47028 * 329.99788 * 16 14 12 20 20 C 1.46508 * 119.99779 * 186.30753 * 10 8 6 21 21 C 1.53002 * 109.46865 * 86.06000 * 20 10 8 22 22 C 1.47193 * 109.47154 * 180.02562 * 21 20 10 23 23 N 8.81035 * 87.11202 * 334.10140 * 2 1 3 24 24 C 1.53185 * 109.03702 * 56.98165 * 6 5 3 25 25 C 1.53090 * 109.16168 * 303.01980 * 24 6 5 26 26 O 1.42905 * 109.47614 * 65.00366 * 3 2 1 27 27 H 1.09001 * 109.47339 * 59.99466 * 1 2 3 28 28 H 1.09001 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47325 * 299.99775 * 1 2 3 30 30 H 1.09003 * 109.46915 * 240.00565 * 2 1 3 31 31 H 1.09001 * 109.47339 * 120.00534 * 2 1 3 32 32 H 1.08995 * 109.52278 * 62.50474 * 5 3 2 33 33 H 1.09004 * 109.52064 * 302.31876 * 5 3 2 34 34 H 1.08995 * 109.47324 * 204.56214 * 11 10 8 35 35 H 1.09003 * 109.46802 * 324.55666 * 11 10 8 36 36 H 0.96997 * 120.00397 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46999 * 206.05712 * 20 10 8 38 38 H 1.08995 * 109.47143 * 326.06277 * 20 10 8 39 39 H 1.09003 * 109.46710 * 300.00061 * 21 20 10 40 40 H 1.08998 * 109.47424 * 59.99557 * 21 20 10 41 41 H 1.08993 * 109.52220 * 183.11681 * 24 6 5 42 42 H 1.08995 * 109.51922 * 62.92385 * 24 6 5 43 43 H 1.08997 * 109.48078 * 297.62742 * 25 24 6 44 44 H 1.08996 * 109.48012 * 177.58958 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9817 -0.8419 5 6 3.5659 1.4445 -0.1244 6 6 4.0734 2.8885 -0.0630 7 1 5.1629 2.8950 -0.0954 8 6 3.5294 3.6643 -1.2349 9 8 2.6660 3.1793 -1.9349 10 7 4.0026 4.8969 -1.5050 11 6 5.1389 5.4277 -0.7477 12 6 6.4250 4.9452 -1.3676 13 1 6.3986 4.3074 -2.2388 14 6 7.6354 5.3180 -0.8226 15 7 7.6675 6.0951 0.2379 16 14 9.2296 4.7206 -1.5914 17 1 9.6764 5.6917 -2.6221 18 1 10.2714 4.6001 -0.5400 19 1 9.0081 3.3950 -2.2231 20 6 3.3807 5.7063 -2.5560 21 6 2.1933 6.4748 -1.9724 22 6 1.5680 7.2875 -3.0284 23 7 1.0861 7.9154 -3.8433 24 6 3.5958 3.5309 1.2430 25 6 2.0688 3.4483 1.3145 26 8 1.6621 2.0815 1.2211 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8544 0.9971 -1.0754 33 1 3.9989 0.8710 0.6953 34 1 5.1121 6.5171 -0.7680 35 1 5.0810 5.0820 0.2844 36 1 8.5190 6.3571 0.6216 37 1 4.1113 6.4120 -2.9514 38 1 3.0332 5.0552 -3.3581 39 1 1.4628 5.7691 -1.5769 40 1 2.5407 7.1258 -1.1702 41 1 3.9056 4.5756 1.2697 42 1 4.0294 2.9996 2.0901 43 1 1.6351 4.0137 0.4898 44 1 1.7261 3.8655 2.2614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180635991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:11 Heat of formation + Delta-G solvation = -73.482367 kcal Electronic energy + Delta-G solvation = -25039.399741 eV Core-core repulsion = 21570.319956 eV Total energy + Delta-G solvation = -3469.079785 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39417 -38.18165 -36.66426 -35.31692 -33.88251 -33.45784 -32.79818 -31.02833 -29.55330 -27.28065 -25.79092 -24.09297 -23.26217 -23.13961 -21.16819 -20.60562 -18.10581 -17.51773 -16.69372 -16.34088 -16.12431 -15.83492 -15.38482 -14.75007 -14.65262 -14.47284 -14.13285 -13.75661 -13.55269 -13.32322 -13.09402 -12.83255 -12.69866 -12.45379 -12.25254 -12.07148 -11.78905 -11.69120 -11.64245 -11.48016 -11.21832 -11.08952 -10.95616 -10.82858 -10.69182 -10.65197 -10.32739 -10.22907 -10.07291 -9.81729 -9.27036 -8.72069 -8.60634 -7.94897 -6.29426 -4.36692 2.79258 2.89669 3.16652 3.20320 3.24937 3.29534 3.63394 4.07790 4.24505 4.32155 4.89380 5.03015 5.06136 5.17892 5.18365 5.23993 5.28417 5.35297 5.37882 5.50766 5.57337 5.63763 5.76297 5.83766 5.94185 5.99415 6.03294 6.06885 6.14862 6.18805 6.21017 6.30670 6.36508 6.41739 6.48822 6.53697 6.65392 7.07503 7.35823 7.58237 7.65561 7.66038 7.93602 8.12586 8.66622 8.84420 9.31906 10.77228 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.006096 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.456354 B = 4592.369102 C = 6345.667892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.075 3.925 4 H 0.096 0.904 5 C -0.126 4.126 6 C -0.109 4.109 7 H 0.116 0.884 8 C 0.527 3.473 9 O -0.567 6.567 10 N -0.595 5.595 11 C 0.229 3.771 12 C -0.542 4.542 13 H 0.061 0.939 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.124 3.876 21 C -0.045 4.045 22 C 0.220 3.780 23 N -0.449 5.449 24 C -0.147 4.147 25 C 0.063 3.937 26 O -0.384 6.384 27 H 0.052 0.948 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.050 0.950 36 H 0.266 0.734 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 -6.111 3.373 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.113 0.887 5 C -0.164 4.164 6 C -0.130 4.130 7 H 0.134 0.866 8 C 0.316 3.684 9 O -0.448 6.448 10 N -0.325 5.325 11 C 0.109 3.891 12 C -0.581 4.581 13 H 0.079 0.921 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.722 3.278 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.001 4.001 21 C -0.087 4.087 22 C -0.098 4.098 23 N -0.126 5.126 24 C -0.185 4.185 25 C -0.014 4.014 26 O -0.304 6.304 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.437 -5.404 2.076 11.071 hybrid contribution 1.659 -0.202 -0.199 1.683 sum -7.778 -5.606 1.877 9.770 Atomic orbital electron populations 1.21694 0.95722 1.00828 1.02192 1.21519 0.96325 0.95285 1.02006 1.22572 0.93778 0.93746 0.88119 0.88694 1.21979 0.96644 0.95331 1.02464 1.21327 1.03803 0.94606 0.93262 0.86617 1.20498 0.81206 0.81322 0.85388 1.90512 1.33806 1.69097 1.51388 1.48219 1.33057 1.14970 1.36213 1.19704 0.81844 0.95435 0.92090 1.21479 0.90465 1.31950 1.14171 0.92076 1.24908 0.99215 0.94692 0.94754 1.69894 1.26697 1.34734 1.21364 0.86539 0.82813 0.79390 0.79040 1.20497 1.21010 1.19748 1.21119 0.93229 0.94693 0.91109 1.19788 0.98536 0.97260 0.93098 1.29093 0.93168 0.93318 0.94174 1.81186 1.10014 1.10691 1.10727 1.22263 0.96485 1.02991 0.96780 1.22526 0.93957 0.83482 1.01418 1.87817 1.78747 1.24420 1.39402 0.92936 0.93359 0.92177 0.91020 0.91838 0.90885 0.91229 0.94359 0.93203 0.92403 0.89362 0.90100 0.87522 0.87041 0.89116 0.90392 0.93606 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 37.16 0.36 -1.32 16 2 C -0.11 -1.41 5.64 -26.73 -0.15 -1.56 16 3 C 0.07 1.10 2.36 -26.68 -0.06 1.03 16 4 H 0.10 1.59 5.45 -51.93 -0.28 1.31 16 5 C -0.13 -1.88 4.60 -26.59 -0.12 -2.01 16 6 C -0.11 -1.78 2.20 -91.58 -0.20 -1.98 16 7 H 0.12 2.11 7.09 -51.93 -0.37 1.74 16 8 C 0.53 9.28 5.64 -10.99 -0.06 9.21 16 9 O -0.57 -10.68 13.18 5.56 0.07 -10.61 16 10 N -0.59 -10.39 2.48 -175.05 -0.43 -10.82 16 11 C 0.23 4.63 4.69 -5.19 -0.02 4.61 16 12 C -0.54 -12.80 8.77 -34.44 -0.30 -13.10 16 13 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 14 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -22.68 13.29 55.43 0.74 -21.94 16 16 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 C 0.12 1.88 5.35 -4.04 -0.02 1.86 16 21 C -0.05 -0.55 6.00 -29.52 -0.18 -0.73 16 22 C 0.22 3.07 15.43 -20.76 -0.32 2.75 16 23 N -0.45 -7.32 18.54 42.16 0.78 -6.54 16 24 C -0.15 -2.13 5.30 -26.59 -0.14 -2.28 16 25 C 0.06 0.86 6.62 37.20 0.25 1.11 16 26 O -0.38 -5.75 9.94 -35.23 -0.35 -6.10 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.72 7.82 -51.93 -0.41 0.31 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.04 0.81 8.03 -51.93 -0.42 0.39 16 35 H 0.05 1.02 4.52 -51.93 -0.23 0.79 16 36 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 37 H 0.09 1.35 8.04 -51.93 -0.42 0.93 16 38 H 0.08 1.28 7.46 -51.93 -0.39 0.89 16 39 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 1.35 5.74 -51.93 -0.30 1.06 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.65 7.38 -51.93 -0.38 0.26 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -27.13 355.22 -6.90 -34.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.97 Total: 3.01 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -1.07 Total: -0.85 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 1.08 Total: -39.30 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.28 Total: -16.70 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.13 -6.90 -34.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180635991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.454 kcal (2) G-P(sol) polarization free energy of solvation -27.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds