Wall clock time and date at job start Tue Mar 31 2020 07:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47213 * 2 1 4 4 H 1.08991 * 109.49163 * 304.97499 * 3 2 1 5 5 C 1.53093 * 109.48040 * 184.94262 * 3 2 1 6 6 C 1.53176 * 109.16223 * 182.41171 * 5 3 2 7 7 H 1.08997 * 109.61521 * 176.88862 * 6 5 3 8 8 C 1.50701 * 109.54316 * 297.11666 * 6 5 3 9 9 O 1.21274 * 119.99977 * 10.19698 * 8 6 5 10 10 N 1.34772 * 119.99666 * 190.19982 * 8 6 5 11 11 C 1.46504 * 120.00574 * 6.31226 * 10 8 6 12 12 C 1.50700 * 109.47169 * 84.55544 * 11 10 8 13 13 H 1.08004 * 119.99736 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99924 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00079 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47011 * 89.99796 * 16 14 12 18 18 H 1.48504 * 109.46999 * 209.99688 * 16 14 12 19 19 H 1.48501 * 109.47028 * 329.99788 * 16 14 12 20 20 C 1.46508 * 119.99779 * 186.30753 * 10 8 6 21 21 C 1.53002 * 109.46865 * 86.06000 * 20 10 8 22 22 C 1.47193 * 109.47154 * 180.02562 * 21 20 10 23 23 N 8.81035 * 87.11202 * 334.10140 * 2 1 3 24 24 C 1.53185 * 109.03702 * 56.98165 * 6 5 3 25 25 C 1.53090 * 109.16168 * 303.01980 * 24 6 5 26 26 O 1.42905 * 109.47614 * 65.00366 * 3 2 1 27 27 H 1.09001 * 109.47339 * 59.99466 * 1 2 3 28 28 H 1.09001 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47325 * 299.99775 * 1 2 3 30 30 H 1.09003 * 109.46915 * 240.00565 * 2 1 3 31 31 H 1.09001 * 109.47339 * 120.00534 * 2 1 3 32 32 H 1.08995 * 109.52278 * 62.50474 * 5 3 2 33 33 H 1.09004 * 109.52064 * 302.31876 * 5 3 2 34 34 H 1.08995 * 109.47324 * 204.56214 * 11 10 8 35 35 H 1.09003 * 109.46802 * 324.55666 * 11 10 8 36 36 H 0.96997 * 120.00397 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46999 * 206.05712 * 20 10 8 38 38 H 1.08995 * 109.47143 * 326.06277 * 20 10 8 39 39 H 1.09003 * 109.46710 * 300.00061 * 21 20 10 40 40 H 1.08998 * 109.47424 * 59.99557 * 21 20 10 41 41 H 1.08993 * 109.52220 * 183.11681 * 24 6 5 42 42 H 1.08995 * 109.51922 * 62.92385 * 24 6 5 43 43 H 1.08997 * 109.48078 * 297.62742 * 25 24 6 44 44 H 1.08996 * 109.48012 * 177.58958 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9817 -0.8419 5 6 3.5659 1.4445 -0.1244 6 6 4.0734 2.8885 -0.0630 7 1 5.1629 2.8950 -0.0954 8 6 3.5294 3.6643 -1.2349 9 8 2.6660 3.1793 -1.9349 10 7 4.0026 4.8969 -1.5050 11 6 5.1389 5.4277 -0.7477 12 6 6.4250 4.9452 -1.3676 13 1 6.3986 4.3074 -2.2388 14 6 7.6354 5.3180 -0.8226 15 7 7.6675 6.0951 0.2379 16 14 9.2296 4.7206 -1.5914 17 1 9.6764 5.6917 -2.6221 18 1 10.2714 4.6001 -0.5400 19 1 9.0081 3.3950 -2.2231 20 6 3.3807 5.7063 -2.5560 21 6 2.1933 6.4748 -1.9724 22 6 1.5680 7.2875 -3.0284 23 7 1.0861 7.9154 -3.8433 24 6 3.5958 3.5309 1.2430 25 6 2.0688 3.4483 1.3145 26 8 1.6621 2.0815 1.2211 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8544 0.9971 -1.0754 33 1 3.9989 0.8710 0.6953 34 1 5.1121 6.5171 -0.7680 35 1 5.0810 5.0820 0.2844 36 1 8.5190 6.3571 0.6216 37 1 4.1113 6.4120 -2.9514 38 1 3.0332 5.0552 -3.3581 39 1 1.4628 5.7691 -1.5769 40 1 2.5407 7.1258 -1.1702 41 1 3.9056 4.5756 1.2697 42 1 4.0294 2.9996 2.0901 43 1 1.6351 4.0137 0.4898 44 1 1.7261 3.8655 2.2614 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180635991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:11 Heat of formation + Delta-G solvation = -87.063039 kcal Electronic energy + Delta-G solvation = -25039.988643 eV Core-core repulsion = 21570.319956 eV Total energy + Delta-G solvation = -3469.668687 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.70847 -39.43036 -37.88821 -36.78181 -35.00772 -34.77320 -34.39191 -32.33421 -30.63535 -28.98111 -26.98167 -25.34247 -24.82421 -24.35869 -22.29141 -21.80920 -19.52158 -18.80173 -18.35564 -17.70226 -17.26185 -17.10627 -16.76023 -16.22892 -15.97831 -15.80420 -15.31593 -14.98078 -14.59494 -14.53101 -14.38719 -14.21445 -13.92685 -13.78313 -13.60154 -13.43386 -13.15286 -13.04398 -12.86323 -12.75129 -12.69749 -12.50075 -12.32046 -12.12281 -11.94662 -11.78005 -11.73148 -11.60971 -11.47384 -11.22549 -10.64135 -10.40286 -9.96396 -9.45955 -8.16445 -6.27801 1.42233 1.47068 1.53407 1.59739 1.76241 1.83329 2.28762 2.46274 2.98764 3.14264 3.16591 3.68472 3.82147 3.97862 4.06082 4.10378 4.12978 4.24385 4.38027 4.39075 4.51472 4.55602 4.66884 4.72449 4.83703 4.84346 4.91326 4.98724 5.02677 5.04020 5.09124 5.13213 5.18111 5.21925 5.24848 5.42197 5.43848 5.52874 5.71756 5.90055 6.14312 6.45127 6.52666 6.59277 6.87273 7.35687 7.46819 8.88335 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.010703 B = 0.006096 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.456354 B = 4592.369102 C = 6345.667892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.074 0.926 5 C -0.124 4.124 6 C -0.110 4.110 7 H 0.094 0.906 8 C 0.526 3.474 9 O -0.578 6.578 10 N -0.594 5.594 11 C 0.242 3.758 12 C -0.546 4.546 13 H 0.047 0.953 14 C 0.030 3.970 15 N -0.913 5.913 16 Si 0.942 3.058 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.274 1.274 20 C 0.121 3.879 21 C -0.030 4.030 22 C 0.244 3.756 23 N -0.489 5.489 24 C -0.141 4.141 25 C 0.063 3.937 26 O -0.389 6.389 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.033 0.967 35 H 0.052 0.948 36 H 0.267 0.733 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.134 0.866 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 -6.736 4.147 11.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.021 3.979 4 H 0.092 0.908 5 C -0.162 4.162 6 C -0.131 4.131 7 H 0.112 0.888 8 C 0.316 3.684 9 O -0.460 6.460 10 N -0.324 5.324 11 C 0.121 3.879 12 C -0.585 4.585 13 H 0.065 0.935 14 C -0.171 4.171 15 N -0.552 5.552 16 Si 0.769 3.231 17 H -0.206 1.206 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.004 4.004 21 C -0.071 4.071 22 C -0.073 4.073 23 N -0.167 5.167 24 C -0.179 4.179 25 C -0.013 4.013 26 O -0.309 6.309 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.059 0.941 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.940 -6.029 2.838 11.967 hybrid contribution 1.815 -0.036 -0.469 1.875 sum -8.124 -6.065 2.369 10.412 Atomic orbital electron populations 1.21662 0.94962 1.01898 1.01566 1.21542 0.97000 0.93815 1.02710 1.22504 0.93200 0.94839 0.87399 0.90810 1.21980 0.97151 0.94462 1.02580 1.21331 1.02352 0.95638 0.93822 0.88831 1.20718 0.80962 0.81220 0.85546 1.90518 1.34400 1.69234 1.51879 1.48123 1.32526 1.15299 1.36446 1.19405 0.81455 0.94822 0.92171 1.21704 0.92018 1.31214 1.13548 0.93463 1.25441 1.01453 0.95026 0.95201 1.69953 1.27155 1.35795 1.22299 0.85793 0.80286 0.78715 0.78291 1.20556 1.20772 1.19930 1.21181 0.94123 0.94526 0.90571 1.19715 0.97413 0.97244 0.92744 1.29229 0.92144 0.92408 0.93525 1.81214 1.11416 1.12195 1.11864 1.22220 0.97287 1.02513 0.95865 1.22625 0.93090 0.83051 1.02570 1.87821 1.78784 1.24978 1.39314 0.93536 0.91472 0.92792 0.90336 0.91085 0.91598 0.90000 0.94917 0.93047 0.92418 0.89622 0.90853 0.86364 0.84869 0.89576 0.89611 0.94116 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.81 71.98 0.71 -2.33 16 2 C -0.11 -2.61 5.64 30.59 0.17 -2.44 16 3 C 0.08 2.18 2.36 30.63 0.07 2.26 16 4 H 0.07 2.42 5.45 -2.39 -0.01 2.41 16 5 C -0.12 -3.59 4.60 30.68 0.14 -3.44 16 6 C -0.11 -3.54 2.20 -11.42 -0.03 -3.56 16 7 H 0.09 3.43 7.09 -2.39 -0.02 3.41 16 8 C 0.53 18.24 5.64 87.66 0.49 18.74 16 9 O -0.58 -21.50 13.18 -3.01 -0.04 -21.54 16 10 N -0.59 -20.41 2.48 -826.14 -2.05 -22.45 16 11 C 0.24 9.69 4.69 85.63 0.40 10.09 16 12 C -0.55 -25.73 8.77 25.60 0.22 -25.50 16 13 H 0.05 2.32 7.81 -2.91 -0.02 2.30 16 14 C 0.03 1.45 5.46 84.66 0.46 1.91 16 15 N -0.91 -46.21 13.29 21.45 0.28 -45.92 16 16 Si 0.94 39.71 29.54 68.60 2.03 41.73 16 17 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 C 0.12 3.56 5.35 86.38 0.46 4.03 16 21 C -0.03 -0.68 6.00 28.79 0.17 -0.51 16 22 C 0.24 6.49 15.43 89.44 1.38 7.87 16 23 N -0.49 -15.59 18.54 20.00 0.37 -15.22 16 24 C -0.14 -3.89 5.30 30.69 0.16 -3.73 16 25 C 0.06 1.60 6.62 72.01 0.48 2.08 16 26 O -0.39 -10.92 9.94 -148.98 -1.48 -12.40 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.20 7.82 -2.38 -0.02 1.18 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 35 H 0.05 2.08 4.52 -2.39 -0.01 2.07 16 36 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 37 H 0.09 2.56 8.04 -2.39 -0.02 2.54 16 38 H 0.07 2.28 7.46 -2.39 -0.02 2.26 16 39 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.09 2.46 5.74 -2.39 -0.01 2.45 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.04 1.08 7.38 -2.39 -0.02 1.06 16 44 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -56.46 355.22 5.40 -51.06 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.99 Total: 19.31 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 5.30 Total: 5.44 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -1.39 Total: -83.59 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.52 Total: -33.95 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -56.46 5.40 -51.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180635991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.005 kcal (2) G-P(sol) polarization free energy of solvation -56.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds