Wall clock time and date at job start Tue Mar 31 2020 07:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47242 * 2 1 4 4 H 1.08998 * 109.48580 * 55.02137 * 3 2 1 5 5 C 1.53089 * 109.48229 * 175.05825 * 3 2 1 6 6 C 1.53179 * 109.16908 * 177.59157 * 5 3 2 7 7 H 1.09005 * 109.54338 * 62.87844 * 6 5 3 8 8 C 1.50697 * 109.61950 * 183.10882 * 6 5 3 9 9 O 1.21272 * 120.00261 * 6.36807 * 8 6 5 10 10 N 1.34781 * 119.99820 * 186.36808 * 8 6 5 11 11 C 1.46504 * 119.99997 * 5.03096 * 10 8 6 12 12 C 1.50695 * 109.47303 * 95.70578 * 11 10 8 13 13 H 1.08003 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99827 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99906 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47333 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00010 * 16 14 12 19 19 H 1.48501 * 109.47140 * 239.99898 * 16 14 12 20 20 C 1.46498 * 119.99903 * 185.02300 * 10 8 6 21 21 C 1.53003 * 109.46913 * 84.88400 * 20 10 8 22 22 C 1.47201 * 109.47034 * 179.97438 * 21 20 10 23 23 N 9.23886 * 159.85485 * 27.22834 * 3 1 2 24 24 C 1.53184 * 109.03335 * 303.02004 * 6 5 3 25 25 C 1.53091 * 109.16309 * 56.97744 * 24 6 5 26 26 O 1.42909 * 109.41599 * 302.38885 * 25 24 6 27 27 H 1.09004 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47077 * 299.99949 * 1 2 3 29 29 H 1.08999 * 109.46716 * 60.00230 * 1 2 3 30 30 H 1.08999 * 109.46716 * 119.99770 * 2 1 3 31 31 H 1.09003 * 109.47065 * 239.99277 * 2 1 3 32 32 H 1.09002 * 109.52304 * 297.49564 * 5 3 2 33 33 H 1.09003 * 109.52532 * 57.68008 * 5 3 2 34 34 H 1.09001 * 109.46543 * 215.71067 * 11 10 8 35 35 H 1.09003 * 109.46821 * 335.70431 * 11 10 8 36 36 H 0.96996 * 119.99687 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.47287 * 204.88199 * 20 10 8 38 38 H 1.08998 * 109.47558 * 324.88604 * 20 10 8 39 39 H 1.08996 * 109.46980 * 299.99987 * 21 20 10 40 40 H 1.08995 * 109.47137 * 60.00197 * 21 20 10 41 41 H 1.09003 * 109.51998 * 297.06926 * 24 6 5 42 42 H 1.08996 * 109.57643 * 176.91709 * 24 6 5 43 43 H 1.08997 * 109.47894 * 182.41043 * 25 24 6 44 44 H 1.08998 * 109.48479 * 62.37490 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9815 0.8419 5 6 3.5659 1.4444 0.1243 6 6 4.0736 2.8883 0.0631 7 1 3.6801 3.4495 0.9107 8 6 5.5798 2.8974 0.1079 9 8 6.1941 1.8526 0.0650 10 7 6.2443 4.0667 0.1956 11 6 5.5033 5.3200 0.3584 12 6 5.4373 5.6783 1.8206 13 1 5.9014 5.0369 2.5553 14 6 4.7854 6.8256 2.2205 15 7 4.2217 7.6074 1.3258 16 14 4.7043 7.2701 4.0330 17 1 5.4126 6.2355 4.8287 18 1 5.3519 8.5890 4.2487 19 1 3.2845 7.3397 4.4625 20 6 7.7077 4.0844 0.1283 21 6 8.1506 4.1081 -1.3360 22 6 9.6209 4.1265 -1.4037 23 7 10.7557 4.1396 -1.4558 24 6 3.5958 3.5309 -1.2429 25 6 2.0688 3.4483 -1.3144 26 8 1.6621 2.0815 -1.2211 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 3.8544 0.9970 1.0755 33 1 3.9989 0.8709 -0.6953 34 1 6.0101 6.1153 -0.1882 35 1 4.4928 5.1979 -0.0317 36 1 3.7628 8.4143 1.6072 37 1 8.0840 4.9724 0.6361 38 1 8.1046 3.1928 0.6136 39 1 7.7742 3.2201 -1.8438 40 1 7.7538 4.9997 -1.8213 41 1 4.0295 2.9996 -2.0901 42 1 3.9058 4.5754 -1.2707 43 1 1.7262 3.8656 -2.2613 44 1 1.6351 4.0137 -0.4896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180636009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:15 Heat of formation + Delta-G solvation = -76.272214 kcal Electronic energy + Delta-G solvation = -24545.664257 eV Core-core repulsion = 21076.463495 eV Total energy + Delta-G solvation = -3469.200761 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12088 -38.53588 -36.67023 -35.29326 -33.98627 -33.52514 -32.80402 -31.00167 -29.63261 -27.29095 -26.03525 -24.13024 -23.15461 -23.06497 -21.37586 -20.23295 -18.29735 -17.50421 -16.71757 -16.54735 -16.20302 -15.82901 -15.27330 -14.82738 -14.61586 -14.56045 -14.18598 -13.74568 -13.61060 -13.57402 -13.15564 -12.85730 -12.74855 -12.36464 -12.30809 -12.18289 -11.90423 -11.68054 -11.58460 -11.32122 -11.18142 -11.04527 -10.95934 -10.83770 -10.73742 -10.61974 -10.35353 -10.23084 -10.11164 -9.77340 -9.49231 -8.96974 -8.62216 -7.93181 -6.29490 -4.36196 2.82760 2.93289 3.15125 3.22154 3.25293 3.30679 3.64333 3.94948 4.24726 4.33378 4.81810 4.95796 5.04795 5.07455 5.13294 5.22202 5.26229 5.32339 5.34638 5.47527 5.54091 5.64137 5.65140 5.76613 5.89441 5.89539 5.95520 6.02413 6.06750 6.11191 6.14728 6.23446 6.25104 6.32247 6.38760 6.56536 6.64690 7.07214 7.36462 7.44330 7.65340 7.69303 7.93361 8.16775 8.66894 8.85441 9.32261 10.77229 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.005943 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.736612 B = 4710.597175 C = 6805.657966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.058 0.942 5 C -0.126 4.126 6 C -0.105 4.105 7 H 0.107 0.893 8 C 0.525 3.475 9 O -0.568 6.568 10 N -0.594 5.594 11 C 0.224 3.776 12 C -0.541 4.541 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.126 3.874 21 C -0.045 4.045 22 C 0.221 3.779 23 N -0.450 5.450 24 C -0.152 4.152 25 C 0.065 3.935 26 O -0.382 6.382 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.174 -7.900 -4.532 11.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C 0.032 3.968 4 H 0.076 0.924 5 C -0.164 4.164 6 C -0.126 4.126 7 H 0.125 0.875 8 C 0.313 3.687 9 O -0.449 6.449 10 N -0.324 5.324 11 C 0.105 3.895 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.001 3.999 21 C -0.087 4.087 22 C -0.097 4.097 23 N -0.128 5.128 24 C -0.189 4.189 25 C -0.011 4.011 26 O -0.301 6.301 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.365 -8.315 -4.791 10.543 hybrid contribution -0.307 0.794 1.324 1.574 sum -4.672 -7.522 -3.467 9.509 Atomic orbital electron populations 1.21720 0.95514 1.01137 1.02261 1.21524 0.96361 0.94686 1.02650 1.22154 0.93671 0.93716 0.87225 0.92388 1.22008 0.94992 0.95826 1.03605 1.21264 0.92819 0.97880 1.00653 0.87489 1.20441 0.89816 0.83135 0.75293 1.90602 1.70043 1.32080 1.52149 1.48186 1.05346 1.08903 1.70001 1.19807 0.92819 0.79479 0.97429 1.21525 1.35944 1.07999 0.92446 0.92008 1.24909 0.94944 0.95876 0.97917 1.69905 1.35527 1.13966 1.33398 0.86494 0.77966 0.78532 0.84854 1.19668 1.20816 1.20781 1.21086 0.82184 1.04023 0.92653 1.19778 0.81558 1.05833 1.01485 1.29110 0.95137 0.92519 0.92898 1.81175 1.13031 1.09666 1.08902 1.22374 0.96941 1.03085 0.96529 1.22541 0.93603 0.82755 1.02239 1.87865 1.78666 1.24991 1.38612 0.93104 0.92986 0.91971 0.90755 0.91214 0.90806 0.90544 0.94600 0.92534 0.92480 0.89166 0.90318 0.87413 0.87096 0.91290 0.88417 0.88870 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.81 37.16 0.36 -1.13 16 2 C -0.11 -1.27 5.64 -26.73 -0.15 -1.42 16 3 C 0.09 1.18 2.64 -26.69 -0.07 1.11 16 4 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 5 C -0.13 -1.84 4.08 -26.59 -0.11 -1.95 16 6 C -0.11 -1.69 1.76 -91.59 -0.16 -1.85 16 7 H 0.11 1.88 7.68 -51.93 -0.40 1.49 16 8 C 0.52 9.50 6.94 -10.99 -0.08 9.42 16 9 O -0.57 -11.34 15.57 5.56 0.09 -11.25 16 10 N -0.59 -10.64 2.47 -175.06 -0.43 -11.07 16 11 C 0.22 4.56 4.64 -5.19 -0.02 4.54 16 12 C -0.54 -12.83 9.38 -34.44 -0.32 -13.15 16 13 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 14 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -22.62 13.29 55.43 0.74 -21.88 16 16 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 17 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 20 C 0.13 1.99 5.37 -4.04 -0.02 1.97 16 21 C -0.05 -0.58 5.99 -29.52 -0.18 -0.75 16 22 C 0.22 3.18 15.43 -20.76 -0.32 2.86 16 23 N -0.45 -7.52 18.54 42.15 0.78 -6.74 16 24 C -0.15 -2.17 5.04 -26.59 -0.13 -2.31 16 25 C 0.07 0.86 6.84 37.20 0.25 1.12 16 26 O -0.38 -5.34 9.94 -35.23 -0.35 -5.69 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.17 7.94 -51.93 -0.41 0.76 16 34 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.06 1.15 3.95 -51.93 -0.21 0.95 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 38 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 39 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.48 5.42 -51.93 -0.28 1.19 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -27.67 361.86 -6.92 -34.59 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.13 Total: 2.10 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.05 Total: 0.00 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 1.09 Total: -39.69 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.26 Total: -16.94 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.67 -6.92 -34.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180636009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.680 kcal (2) G-P(sol) polarization free energy of solvation -27.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds