Wall clock time and date at job start Tue Mar 31 2020 07:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47242 * 2 1 4 4 H 1.08998 * 109.48580 * 55.02137 * 3 2 1 5 5 C 1.53089 * 109.48229 * 175.05825 * 3 2 1 6 6 C 1.53179 * 109.16908 * 177.59157 * 5 3 2 7 7 H 1.09005 * 109.54338 * 62.87844 * 6 5 3 8 8 C 1.50697 * 109.61950 * 183.10882 * 6 5 3 9 9 O 1.21272 * 120.00261 * 6.36807 * 8 6 5 10 10 N 1.34781 * 119.99820 * 186.36808 * 8 6 5 11 11 C 1.46504 * 119.99997 * 5.03096 * 10 8 6 12 12 C 1.50695 * 109.47303 * 95.70578 * 11 10 8 13 13 H 1.08003 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99827 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99906 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47333 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00010 * 16 14 12 19 19 H 1.48501 * 109.47140 * 239.99898 * 16 14 12 20 20 C 1.46498 * 119.99903 * 185.02300 * 10 8 6 21 21 C 1.53003 * 109.46913 * 84.88400 * 20 10 8 22 22 C 1.47201 * 109.47034 * 179.97438 * 21 20 10 23 23 N 9.23886 * 159.85485 * 27.22834 * 3 1 2 24 24 C 1.53184 * 109.03335 * 303.02004 * 6 5 3 25 25 C 1.53091 * 109.16309 * 56.97744 * 24 6 5 26 26 O 1.42909 * 109.41599 * 302.38885 * 25 24 6 27 27 H 1.09004 * 109.47310 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47077 * 299.99949 * 1 2 3 29 29 H 1.08999 * 109.46716 * 60.00230 * 1 2 3 30 30 H 1.08999 * 109.46716 * 119.99770 * 2 1 3 31 31 H 1.09003 * 109.47065 * 239.99277 * 2 1 3 32 32 H 1.09002 * 109.52304 * 297.49564 * 5 3 2 33 33 H 1.09003 * 109.52532 * 57.68008 * 5 3 2 34 34 H 1.09001 * 109.46543 * 215.71067 * 11 10 8 35 35 H 1.09003 * 109.46821 * 335.70431 * 11 10 8 36 36 H 0.96996 * 119.99687 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.47287 * 204.88199 * 20 10 8 38 38 H 1.08998 * 109.47558 * 324.88604 * 20 10 8 39 39 H 1.08996 * 109.46980 * 299.99987 * 21 20 10 40 40 H 1.08995 * 109.47137 * 60.00197 * 21 20 10 41 41 H 1.09003 * 109.51998 * 297.06926 * 24 6 5 42 42 H 1.08996 * 109.57643 * 176.91709 * 24 6 5 43 43 H 1.08997 * 109.47894 * 182.41043 * 25 24 6 44 44 H 1.08998 * 109.48479 * 62.37490 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9815 0.8419 5 6 3.5659 1.4444 0.1243 6 6 4.0736 2.8883 0.0631 7 1 3.6801 3.4495 0.9107 8 6 5.5798 2.8974 0.1079 9 8 6.1941 1.8526 0.0650 10 7 6.2443 4.0667 0.1956 11 6 5.5033 5.3200 0.3584 12 6 5.4373 5.6783 1.8206 13 1 5.9014 5.0369 2.5553 14 6 4.7854 6.8256 2.2205 15 7 4.2217 7.6074 1.3258 16 14 4.7043 7.2701 4.0330 17 1 5.4126 6.2355 4.8287 18 1 5.3519 8.5890 4.2487 19 1 3.2845 7.3397 4.4625 20 6 7.7077 4.0844 0.1283 21 6 8.1506 4.1081 -1.3360 22 6 9.6209 4.1265 -1.4037 23 7 10.7557 4.1396 -1.4558 24 6 3.5958 3.5309 -1.2429 25 6 2.0688 3.4483 -1.3144 26 8 1.6621 2.0815 -1.2211 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5140 -0.8899 32 1 3.8544 0.9970 1.0755 33 1 3.9989 0.8709 -0.6953 34 1 6.0101 6.1153 -0.1882 35 1 4.4928 5.1979 -0.0317 36 1 3.7628 8.4143 1.6072 37 1 8.0840 4.9724 0.6361 38 1 8.1046 3.1928 0.6136 39 1 7.7742 3.2201 -1.8438 40 1 7.7538 4.9997 -1.8213 41 1 4.0295 2.9996 -2.0901 42 1 3.9058 4.5754 -1.2707 43 1 1.7262 3.8656 -2.2613 44 1 1.6351 4.0137 -0.4896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180636009.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:14 Heat of formation + Delta-G solvation = -90.167621 kcal Electronic energy + Delta-G solvation = -24546.266807 eV Core-core repulsion = 21076.463495 eV Total energy + Delta-G solvation = -3469.803312 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44774 -39.76058 -37.93430 -36.80013 -35.04637 -34.76535 -34.46286 -32.32983 -30.66167 -29.01196 -27.21571 -25.37703 -24.70973 -24.28052 -22.40713 -21.39525 -19.71810 -18.82584 -18.37422 -17.94533 -17.28800 -17.16799 -16.61084 -16.26295 -16.07366 -15.78649 -15.39180 -14.99028 -14.78749 -14.51559 -14.32541 -14.27210 -14.06960 -13.74773 -13.61906 -13.57239 -13.29073 -12.91672 -12.79305 -12.73877 -12.61922 -12.42043 -12.18928 -12.12955 -11.98099 -11.79003 -11.70842 -11.58460 -11.49293 -11.18931 -10.77209 -10.54529 -10.18572 -9.48383 -8.16847 -6.27787 1.40668 1.46734 1.53983 1.58975 1.75936 1.81702 2.26953 2.45555 2.91972 3.13337 3.15946 3.65026 3.74777 3.90926 4.03152 4.10072 4.14296 4.25077 4.28207 4.47765 4.49628 4.52779 4.56060 4.65116 4.80379 4.83588 4.86514 4.91325 4.97536 5.00677 5.04529 5.11201 5.17324 5.19328 5.26856 5.40881 5.43801 5.52230 5.72471 5.87081 6.13199 6.37566 6.52241 6.60276 6.86115 7.33075 7.45625 8.88194 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.005943 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.736612 B = 4710.597175 C = 6805.657966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.091 3.909 4 H 0.057 0.943 5 C -0.119 4.119 6 C -0.104 4.104 7 H 0.090 0.910 8 C 0.522 3.478 9 O -0.587 6.587 10 N -0.593 5.593 11 C 0.236 3.764 12 C -0.547 4.547 13 H 0.047 0.953 14 C 0.030 3.970 15 N -0.912 5.912 16 Si 0.942 3.058 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.122 3.878 21 C -0.029 4.029 22 C 0.244 3.756 23 N -0.489 5.489 24 C -0.144 4.144 25 C 0.066 3.934 26 O -0.387 6.387 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.061 0.939 36 H 0.267 0.733 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 -8.310 -4.922 11.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.157 4.157 6 C -0.125 4.125 7 H 0.108 0.892 8 C 0.312 3.688 9 O -0.469 6.469 10 N -0.323 5.323 11 C 0.116 3.884 12 C -0.585 4.585 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.551 5.551 16 Si 0.769 3.231 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.003 4.003 21 C -0.070 4.070 22 C -0.073 4.073 23 N -0.167 5.167 24 C -0.181 4.181 25 C -0.011 4.011 26 O -0.306 6.306 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.151 0.849 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.133 0.867 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.237 -8.728 -5.181 11.421 hybrid contribution -0.014 0.900 1.477 1.730 sum -5.251 -7.829 -3.704 10.128 Atomic orbital electron populations 1.21691 0.94608 1.02105 1.01900 1.21547 0.97122 0.93201 1.03196 1.22221 0.92468 0.95025 0.86999 0.92524 1.21956 0.96149 0.94550 1.03077 1.21275 0.91402 0.98892 1.00977 0.89204 1.20780 0.90629 0.82729 0.74691 1.90590 1.70641 1.32535 1.53099 1.48114 1.06103 1.08170 1.69881 1.19548 0.93281 0.80127 0.95453 1.21741 1.35281 1.07638 0.93891 0.93433 1.25436 0.95008 0.96067 1.00629 1.69959 1.36305 1.14350 1.34529 0.85747 0.77850 0.77937 0.81564 1.20082 1.20786 1.20444 1.21146 0.81017 1.03456 0.94655 1.19695 0.80402 1.07422 0.99515 1.29234 0.95117 0.91215 0.91709 1.81203 1.14225 1.11169 1.10113 1.22302 0.97867 1.02335 0.95615 1.22606 0.92613 0.82606 1.03228 1.87872 1.78607 1.25232 1.38939 0.91507 0.92816 0.92838 0.89635 0.91263 0.91221 0.91183 0.95113 0.92127 0.92398 0.89578 0.91122 0.86297 0.84931 0.90633 0.89167 0.86703 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.81 71.98 0.71 -1.94 16 2 C -0.11 -2.31 5.64 30.59 0.17 -2.13 16 3 C 0.09 2.26 2.64 30.62 0.08 2.34 16 4 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 5 C -0.12 -3.39 4.08 30.68 0.13 -3.26 16 6 C -0.10 -3.30 1.76 -11.42 -0.02 -3.32 16 7 H 0.09 3.17 7.68 -2.38 -0.02 3.15 16 8 C 0.52 18.61 6.94 87.66 0.61 19.22 16 9 O -0.59 -23.05 15.57 -3.01 -0.05 -23.10 16 10 N -0.59 -20.87 2.47 -826.17 -2.04 -22.91 16 11 C 0.24 9.51 4.64 85.63 0.40 9.91 16 12 C -0.55 -25.85 9.38 25.60 0.24 -25.61 16 13 H 0.05 2.35 7.81 -2.91 -0.02 2.33 16 14 C 0.03 1.44 5.46 84.66 0.46 1.90 16 15 N -0.91 -45.88 13.29 21.45 0.28 -45.60 16 16 Si 0.94 39.69 29.54 68.60 2.03 41.71 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 C 0.12 3.76 5.37 86.38 0.46 4.22 16 21 C -0.03 -0.70 5.99 28.79 0.17 -0.53 16 22 C 0.24 6.73 15.43 89.44 1.38 8.11 16 23 N -0.49 -15.98 18.54 20.01 0.37 -15.61 16 24 C -0.14 -3.94 5.04 30.69 0.15 -3.79 16 25 C 0.07 1.65 6.84 72.01 0.49 2.14 16 26 O -0.39 -10.21 9.94 -148.98 -1.48 -11.69 16 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.06 7.82 -2.39 -0.02 1.04 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.09 7.94 -2.39 -0.02 2.07 16 34 H 0.03 1.28 8.11 -2.39 -0.02 1.26 16 35 H 0.06 2.44 3.95 -2.39 -0.01 2.43 16 36 H 0.27 12.87 8.31 -92.71 -0.77 12.10 16 37 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 38 H 0.07 2.29 7.51 -2.39 -0.02 2.28 16 39 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.09 2.63 5.42 -2.39 -0.01 2.61 16 43 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -57.28 361.86 5.53 -51.75 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.98 Total: 18.18 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 5.44 Total: 7.25 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -1.38 Total: -84.11 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -1.53 Total: -34.78 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.71 kcal Total: -57.28 5.53 -51.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180636009.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.417 kcal (2) G-P(sol) polarization free energy of solvation -57.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds