Wall clock time and date at job start Tue Mar 31 2020 07:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46884 * 2 1 4 4 C 1.53001 * 109.47120 * 175.46141 * 3 2 1 5 5 C 1.53003 * 109.47066 * 294.40761 * 4 3 2 6 6 N 1.46505 * 109.46557 * 295.45737 * 3 2 1 7 7 N 1.28442 * 125.19752 * 299.99823 * 6 3 2 8 8 C 1.30880 * 110.94162 * 180.02562 * 7 6 3 9 9 C 1.50695 * 126.06078 * 180.02562 * 8 7 6 10 10 C 1.39648 * 107.88003 * 359.76205 * 8 7 6 11 11 C 1.36655 * 125.19122 * 120.00406 * 6 3 2 12 12 C 1.47005 * 126.89528 * 359.97438 * 11 6 3 13 13 O 1.21544 * 120.00131 * 180.02562 * 12 11 6 14 14 O 1.34818 * 120.00037 * 359.97438 * 12 11 6 15 15 C 1.45195 * 116.99978 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47219 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47236 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00225 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99746 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47499 * 59.99802 * 21 19 17 23 23 H 1.48496 * 109.47181 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47156 * 299.99709 * 21 19 17 25 25 H 1.08997 * 109.46742 * 65.35604 * 1 2 3 26 26 H 1.09001 * 109.46973 * 185.34671 * 1 2 3 27 27 H 1.08992 * 109.47638 * 305.35164 * 1 2 3 28 28 H 1.08994 * 109.47555 * 239.99529 * 2 1 3 29 29 H 1.09006 * 109.46973 * 119.99407 * 2 1 3 30 30 H 1.09000 * 109.47187 * 55.45892 * 3 2 1 31 31 H 1.09001 * 109.47161 * 54.40616 * 4 3 2 32 32 H 1.09001 * 109.46928 * 174.40748 * 4 3 2 33 33 H 1.08996 * 109.47045 * 306.00684 * 5 4 3 34 34 H 1.09004 * 109.46855 * 66.00423 * 5 4 3 35 35 H 1.08996 * 109.46929 * 186.00446 * 5 4 3 36 36 H 1.09007 * 109.46999 * 89.97468 * 9 8 7 37 37 H 1.08995 * 109.47770 * 209.97753 * 9 8 7 38 38 H 1.09004 * 109.46883 * 329.98356 * 9 8 7 39 39 H 1.07992 * 127.32251 * 180.26409 * 10 8 7 40 40 H 1.08995 * 109.47752 * 300.00522 * 15 14 12 41 41 H 1.09005 * 109.46811 * 60.00773 * 15 14 12 42 42 H 1.09004 * 109.47009 * 300.00584 * 16 15 14 43 43 H 1.09000 * 109.47212 * 60.00131 * 16 15 14 44 44 H 0.97003 * 120.00101 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5657 1.4442 0.1141 5 6 3.9757 0.8834 1.4774 6 7 1.6429 2.1008 -1.2472 7 7 1.9803 1.7184 -2.4260 8 6 1.4717 2.5082 -3.3374 9 6 1.6503 2.3735 -4.8277 10 6 0.7292 3.4942 -2.6843 11 6 0.8571 3.2154 -1.3339 12 6 0.2623 3.9649 -0.2179 13 8 -0.4212 4.9452 -0.4399 14 8 0.4740 3.5643 1.0519 15 6 -0.1437 4.3524 2.1034 16 6 0.2068 3.7496 3.4653 17 6 -0.4349 4.5671 4.5566 18 1 -1.0325 5.4305 4.3041 19 6 -0.2581 4.2135 5.8775 20 7 0.4701 3.1624 6.1850 21 14 -1.0529 5.2272 7.2302 22 1 -2.5271 5.2220 7.0517 23 1 -0.7128 4.6422 8.5520 24 1 -0.5510 6.6233 7.1624 25 1 -0.3633 0.4285 -0.9341 26 1 -0.3633 -1.0232 0.0958 27 1 -0.3634 0.5945 0.8381 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6117 1.9794 0.8465 31 1 3.9898 0.8246 -0.6760 32 1 3.9364 2.4643 0.0144 33 1 3.4664 1.4372 2.2661 34 1 3.6987 -0.1692 1.5355 35 1 5.0540 0.9829 1.6017 36 1 0.8559 1.7472 -5.2337 37 1 1.6073 3.3598 -5.2895 38 1 2.6170 1.9157 -5.0378 39 1 0.1745 4.3031 -3.1363 40 1 0.2251 5.3768 2.0541 41 1 -1.2258 4.3490 1.9719 42 1 -0.1618 2.7250 3.5148 43 1 1.2888 3.7532 3.5966 44 1 0.5948 2.9138 7.1143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182703611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:00 Heat of formation + Delta-G solvation = -40.104262 kcal Electronic energy + Delta-G solvation = -24477.107961 eV Core-core repulsion = 21009.475560 eV Total energy + Delta-G solvation = -3467.632401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.63345 -39.73905 -37.10642 -36.13444 -33.44366 -32.73059 -31.81046 -31.13931 -30.19640 -28.56636 -25.81255 -25.27614 -23.56033 -22.86331 -21.51545 -21.02877 -20.59968 -19.50075 -17.52494 -16.72210 -16.45256 -16.01881 -15.71559 -15.55146 -14.84932 -14.57116 -14.30159 -14.18746 -13.55801 -13.39783 -13.36662 -13.00866 -12.81807 -12.54114 -12.41817 -12.26540 -12.16707 -11.91503 -11.54891 -11.35643 -11.23107 -11.07507 -11.02987 -10.82828 -10.79146 -10.69308 -10.45137 -10.35037 -9.78285 -9.73626 -9.39284 -9.11395 -8.83880 -8.50433 -6.17056 -4.21437 1.17726 2.41116 2.52149 2.93010 3.11970 3.26241 3.30560 3.34034 4.27847 4.33928 4.68029 4.69826 4.76042 4.96839 5.08905 5.17891 5.20003 5.28048 5.35273 5.42462 5.52642 5.55583 5.63924 5.68466 5.70711 5.82052 5.87225 5.91487 5.96179 5.98524 5.98965 6.05095 6.10546 6.27041 6.29770 6.51104 6.52551 6.72849 6.83133 7.44496 7.51281 7.77647 7.95112 8.12921 8.16788 8.83239 9.43375 10.94223 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.004080 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.723284 B = 6860.478536 C = 7759.657758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.129 4.129 3 C 0.132 3.868 4 C -0.126 4.126 5 C -0.153 4.153 6 N -0.247 5.247 7 N -0.264 5.264 8 C 0.010 3.990 9 C -0.063 4.063 10 C -0.157 4.157 11 C -0.021 4.021 12 C 0.533 3.467 13 O -0.498 6.498 14 O -0.358 6.358 15 C 0.074 3.926 16 C 0.027 3.973 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.162 0.838 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.851 -6.081 -16.437 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.167 4.167 3 C 0.033 3.967 4 C -0.165 4.165 5 C -0.211 4.211 6 N -0.037 5.037 7 N -0.099 5.099 8 C -0.146 4.146 9 C -0.121 4.121 10 C -0.185 4.185 11 C -0.146 4.146 12 C 0.375 3.625 13 O -0.385 6.385 14 O -0.274 6.274 15 C 0.002 3.998 16 C -0.010 4.010 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.156 0.844 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.180 0.820 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.380 -6.871 -15.987 18.213 hybrid contribution -1.029 1.401 0.785 1.908 sum 4.350 -5.470 -15.202 16.731 Atomic orbital electron populations 1.21793 0.95063 1.02186 1.02277 1.21914 0.96946 0.94092 1.03768 1.22411 0.97037 0.95275 0.81990 1.21809 0.92688 1.02541 0.99424 1.21805 1.01782 1.01406 0.96078 1.46135 1.33218 1.18479 1.05862 1.72999 1.21996 1.24874 0.90033 1.21964 1.01026 0.95048 0.96526 1.20039 1.02634 1.02741 0.86698 1.21989 1.04148 1.02395 0.89981 1.20857 1.04931 0.94681 0.94179 1.19708 0.78001 0.82072 0.82701 1.90855 1.36574 1.25602 1.85500 1.86528 1.69557 1.56313 1.15033 1.23772 0.96721 0.94228 0.85097 1.19171 0.98267 0.97211 0.86379 1.20916 1.32385 1.12765 0.90573 0.92267 1.24959 0.95082 0.95191 0.98747 1.69947 1.38622 1.25420 1.18742 0.86534 0.79842 0.80326 0.80629 1.20038 1.21102 1.20034 0.93331 0.92177 0.91597 0.90680 0.89189 0.84398 0.90757 0.91390 0.91182 0.92113 0.92025 0.91018 0.90679 0.91098 0.81993 0.91971 0.91959 0.95340 0.95354 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 9.73 37.16 0.36 -1.63 16 2 C -0.13 -1.54 5.35 -26.73 -0.14 -1.69 16 3 C 0.13 1.80 2.43 -67.92 -0.17 1.63 16 4 C -0.13 -1.52 5.58 -26.73 -0.15 -1.67 16 5 C -0.15 -1.69 9.53 37.16 0.35 -1.34 16 6 N -0.25 -3.64 2.62 -50.70 -0.13 -3.77 16 7 N -0.26 -3.72 11.51 33.63 0.39 -3.33 16 8 C 0.01 0.12 7.22 -82.47 -0.60 -0.47 16 9 C -0.06 -0.54 10.45 36.00 0.38 -0.16 16 10 C -0.16 -2.20 10.78 -38.96 -0.42 -2.62 16 11 C -0.02 -0.34 6.96 -82.07 -0.57 -0.91 16 12 C 0.53 9.85 7.94 34.28 0.27 10.12 16 13 O -0.50 -10.17 16.71 -19.30 -0.32 -10.49 16 14 O -0.36 -6.86 7.36 -40.82 -0.30 -7.16 16 15 C 0.07 1.58 5.42 37.16 0.20 1.78 16 16 C 0.03 0.66 5.35 -27.88 -0.15 0.51 16 17 C -0.53 -14.36 9.11 -34.44 -0.31 -14.67 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 25 H 0.05 0.67 7.89 -51.93 -0.41 0.26 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.09 0.96 6.52 -51.93 -0.34 0.62 16 30 H 0.14 2.16 5.07 -51.93 -0.26 1.89 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.59 6.78 -51.93 -0.35 0.24 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -29.96 367.92 -7.39 -37.35 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.24 Total: 0.08 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.04 Total: -9.48 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.99 Total: -31.74 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.62 Total: -17.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.96 -7.39 -37.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182703611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.758 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds