Wall clock time and date at job start Tue Mar 31 2020 07:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46884 * 2 1 4 4 C 1.53001 * 109.47120 * 175.46141 * 3 2 1 5 5 C 1.53003 * 109.47066 * 294.40761 * 4 3 2 6 6 N 1.46505 * 109.46557 * 295.45737 * 3 2 1 7 7 N 1.28442 * 125.19752 * 299.99823 * 6 3 2 8 8 C 1.30880 * 110.94162 * 180.02562 * 7 6 3 9 9 C 1.50695 * 126.06078 * 180.02562 * 8 7 6 10 10 C 1.39648 * 107.88003 * 359.76205 * 8 7 6 11 11 C 1.36655 * 125.19122 * 120.00406 * 6 3 2 12 12 C 1.47005 * 126.89528 * 359.97438 * 11 6 3 13 13 O 1.21544 * 120.00131 * 180.02562 * 12 11 6 14 14 O 1.34818 * 120.00037 * 359.97438 * 12 11 6 15 15 C 1.45195 * 116.99978 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47219 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47236 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00225 * 359.97438 * 17 16 15 19 19 C 1.37885 * 120.00192 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99746 * 359.97438 * 19 17 16 21 21 Si 1.86791 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47499 * 59.99802 * 21 19 17 23 23 H 1.48496 * 109.47181 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47156 * 299.99709 * 21 19 17 25 25 H 1.08997 * 109.46742 * 65.35604 * 1 2 3 26 26 H 1.09001 * 109.46973 * 185.34671 * 1 2 3 27 27 H 1.08992 * 109.47638 * 305.35164 * 1 2 3 28 28 H 1.08994 * 109.47555 * 239.99529 * 2 1 3 29 29 H 1.09006 * 109.46973 * 119.99407 * 2 1 3 30 30 H 1.09000 * 109.47187 * 55.45892 * 3 2 1 31 31 H 1.09001 * 109.47161 * 54.40616 * 4 3 2 32 32 H 1.09001 * 109.46928 * 174.40748 * 4 3 2 33 33 H 1.08996 * 109.47045 * 306.00684 * 5 4 3 34 34 H 1.09004 * 109.46855 * 66.00423 * 5 4 3 35 35 H 1.08996 * 109.46929 * 186.00446 * 5 4 3 36 36 H 1.09007 * 109.46999 * 89.97468 * 9 8 7 37 37 H 1.08995 * 109.47770 * 209.97753 * 9 8 7 38 38 H 1.09004 * 109.46883 * 329.98356 * 9 8 7 39 39 H 1.07992 * 127.32251 * 180.26409 * 10 8 7 40 40 H 1.08995 * 109.47752 * 300.00522 * 15 14 12 41 41 H 1.09005 * 109.46811 * 60.00773 * 15 14 12 42 42 H 1.09004 * 109.47009 * 300.00584 * 16 15 14 43 43 H 1.09000 * 109.47212 * 60.00131 * 16 15 14 44 44 H 0.97003 * 120.00101 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5657 1.4442 0.1141 5 6 3.9757 0.8834 1.4774 6 7 1.6429 2.1008 -1.2472 7 7 1.9803 1.7184 -2.4260 8 6 1.4717 2.5082 -3.3374 9 6 1.6503 2.3735 -4.8277 10 6 0.7292 3.4942 -2.6843 11 6 0.8571 3.2154 -1.3339 12 6 0.2623 3.9649 -0.2179 13 8 -0.4212 4.9452 -0.4399 14 8 0.4740 3.5643 1.0519 15 6 -0.1437 4.3524 2.1034 16 6 0.2068 3.7496 3.4653 17 6 -0.4349 4.5671 4.5566 18 1 -1.0325 5.4305 4.3041 19 6 -0.2581 4.2135 5.8775 20 7 0.4701 3.1624 6.1850 21 14 -1.0529 5.2272 7.2302 22 1 -2.5271 5.2220 7.0517 23 1 -0.7128 4.6422 8.5520 24 1 -0.5510 6.6233 7.1624 25 1 -0.3633 0.4285 -0.9341 26 1 -0.3633 -1.0232 0.0958 27 1 -0.3634 0.5945 0.8381 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6117 1.9794 0.8465 31 1 3.9898 0.8246 -0.6760 32 1 3.9364 2.4643 0.0144 33 1 3.4664 1.4372 2.2661 34 1 3.6987 -0.1692 1.5355 35 1 5.0540 0.9829 1.6017 36 1 0.8559 1.7472 -5.2337 37 1 1.6073 3.3598 -5.2895 38 1 2.6170 1.9157 -5.0378 39 1 0.1745 4.3031 -3.1363 40 1 0.2251 5.3768 2.0541 41 1 -1.2258 4.3490 1.9719 42 1 -0.1618 2.7250 3.5148 43 1 1.2888 3.7532 3.5966 44 1 0.5948 2.9138 7.1143 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182703611.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:59 Heat of formation + Delta-G solvation = -54.709247 kcal Electronic energy + Delta-G solvation = -24477.741281 eV Core-core repulsion = 21009.475560 eV Total energy + Delta-G solvation = -3468.265721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.75678 -41.28595 -38.24177 -37.63917 -35.47456 -33.71675 -32.80568 -32.61867 -31.87525 -29.45835 -27.40756 -26.55520 -25.07865 -23.85739 -22.99229 -22.44884 -21.83563 -20.81550 -18.87495 -18.37627 -17.86343 -17.82401 -17.01608 -16.84289 -16.45184 -15.88309 -15.34104 -15.22908 -15.01204 -14.81395 -14.55764 -14.38596 -14.00723 -13.62954 -13.52879 -13.30413 -13.21731 -13.11525 -13.06978 -12.83566 -12.65888 -12.63358 -12.55312 -12.23971 -12.04031 -11.89229 -11.67742 -11.60673 -11.58422 -11.54347 -11.38692 -10.61099 -10.30214 -9.87024 -8.27513 -6.40009 -0.11905 1.24460 1.40645 1.43705 1.44172 1.48839 1.54854 1.78230 2.39006 3.07266 3.19376 3.42483 3.69265 3.73101 3.95657 4.06975 4.16774 4.17261 4.19858 4.29298 4.34345 4.36242 4.52050 4.63165 4.66326 4.68561 4.78929 4.90783 4.92309 4.94478 5.02353 5.03510 5.08873 5.11198 5.13444 5.26310 5.34931 5.40356 5.44698 5.50961 5.70509 5.74714 6.05287 6.44675 6.72110 6.99364 7.29397 8.84322 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018728 B = 0.004080 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.723284 B = 6860.478536 C = 7759.657758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.127 3.873 4 C -0.118 4.118 5 C -0.149 4.149 6 N -0.248 5.248 7 N -0.266 5.266 8 C 0.013 3.987 9 C -0.061 4.061 10 C -0.150 4.150 11 C -0.051 4.051 12 C 0.534 3.466 13 O -0.522 6.522 14 O -0.356 6.356 15 C 0.088 3.912 16 C 0.037 3.963 17 C -0.552 4.552 18 H 0.063 0.937 19 C 0.012 3.988 20 N -0.922 5.922 21 Si 0.968 3.032 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.267 1.267 25 H 0.035 0.965 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.178 0.822 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.010 0.990 43 H 0.009 0.991 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.075 -6.436 -17.708 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.027 3.973 4 C -0.156 4.156 5 C -0.207 4.207 6 N -0.038 5.038 7 N -0.102 5.102 8 C -0.142 4.142 9 C -0.119 4.119 10 C -0.179 4.179 11 C -0.176 4.176 12 C 0.379 3.621 13 O -0.411 6.411 14 O -0.272 6.272 15 C 0.016 3.984 16 C 0.000 4.000 17 C -0.590 4.590 18 H 0.081 0.919 19 C -0.188 4.188 20 N -0.560 5.560 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.192 1.192 25 H 0.054 0.946 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.195 0.805 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.609 -7.231 -17.272 19.547 hybrid contribution -1.066 1.464 1.073 2.105 sum 4.543 -5.767 -16.199 17.785 Atomic orbital electron populations 1.21751 0.95844 1.02766 1.00572 1.21908 0.96143 0.93079 1.04907 1.22453 0.97985 0.95795 0.81020 1.21757 0.91453 1.02123 1.00297 1.21788 1.02391 1.01890 0.94643 1.46220 1.33087 1.18152 1.06368 1.73018 1.22087 1.25159 0.89933 1.22654 0.99561 0.93757 0.98224 1.20224 1.03655 1.04432 0.83628 1.22341 1.03640 1.02789 0.89138 1.20777 1.06865 0.95980 0.94013 1.20080 0.77537 0.81931 0.82580 1.90829 1.37850 1.26730 1.85644 1.86563 1.69390 1.55870 1.15397 1.23336 0.96701 0.93950 0.84446 1.18942 0.96721 0.96200 0.88173 1.21312 1.32795 1.13258 0.91634 0.91867 1.25866 0.95472 0.96269 1.01209 1.70062 1.39656 1.26846 1.19465 0.85453 0.79066 0.78819 0.77456 1.19209 1.20469 1.19211 0.94557 0.90278 0.93840 0.89630 0.87741 0.87003 0.89451 0.92657 0.93649 0.90507 0.90621 0.89532 0.88706 0.90210 0.80466 0.91951 0.91924 0.97177 0.97234 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.73 71.98 0.70 -3.18 16 2 C -0.12 -2.84 5.35 30.60 0.16 -2.67 16 3 C 0.13 3.48 2.43 44.99 0.11 3.58 16 4 C -0.12 -2.79 5.58 30.60 0.17 -2.62 16 5 C -0.15 -3.25 9.53 71.98 0.69 -2.56 16 6 N -0.25 -7.24 2.62 -314.31 -0.82 -8.06 16 7 N -0.27 -7.10 11.51 -47.51 -0.55 -7.65 16 8 C 0.01 0.30 7.22 43.04 0.31 0.61 16 9 C -0.06 -0.85 10.45 71.23 0.74 -0.11 16 10 C -0.15 -4.03 10.78 22.67 0.24 -3.78 16 11 C -0.05 -1.66 6.96 40.75 0.28 -1.38 16 12 C 0.53 20.29 7.94 70.12 0.56 20.85 16 13 O -0.52 -21.68 16.71 19.69 0.33 -21.35 16 14 O -0.36 -14.27 7.36 -57.30 -0.42 -14.69 16 15 C 0.09 3.91 5.42 71.98 0.39 4.30 16 16 C 0.04 1.90 5.35 29.85 0.16 2.06 16 17 C -0.55 -30.56 9.11 25.60 0.23 -30.33 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 19 C 0.01 0.63 5.46 84.66 0.46 1.10 16 20 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 21 Si 0.97 42.82 29.54 68.60 2.03 44.84 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H 0.04 0.99 7.89 -2.39 -0.02 0.97 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 1.82 8.07 -2.39 -0.02 1.80 16 29 H 0.10 2.10 6.52 -2.38 -0.02 2.08 16 30 H 0.11 3.69 5.07 -2.39 -0.01 3.67 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.40 6.78 -2.38 -0.02 1.39 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 42 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -64.71 367.92 7.03 -57.68 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.97 Total: 16.51 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 5.21 Total: -14.13 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.09 Total: -68.85 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.09 Total: -36.05 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -64.71 7.03 -57.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182703611.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.966 kcal (2) G-P(sol) polarization free energy of solvation -64.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds