Wall clock time and date at job start Tue Mar 31 2020 06:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.46640 * 2 1 4 4 N 1.30178 * 126.80175 * 270.16691 * 3 2 1 5 5 O 1.20925 * 111.60215 * 180.25711 * 4 3 2 6 6 C 1.34043 * 111.56677 * 359.74538 * 5 4 3 7 7 C 1.50699 * 126.77392 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47076 * 269.99551 * 7 6 5 9 9 C 1.35444 * 106.44634 * 359.97438 * 6 5 4 10 10 C 1.50702 * 128.00753 * 179.97438 * 9 6 5 11 11 C 1.50707 * 109.46920 * 89.99847 * 10 9 6 12 12 O 1.21281 * 119.99904 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99886 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00077 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.47031 * 324.99543 * 14 13 11 16 16 C 1.50699 * 109.47154 * 205.00032 * 14 13 11 17 17 H 1.08000 * 120.00147 * 359.97438 * 16 14 13 18 18 C 1.37878 * 120.00379 * 179.97438 * 16 14 13 19 19 N 1.31518 * 119.99761 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 120.00461 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46941 * 59.99620 * 20 18 16 22 22 H 1.48492 * 109.47261 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46544 * 300.00112 * 20 18 16 24 24 C 1.52992 * 109.47408 * 84.99397 * 14 13 11 25 25 C 1.52997 * 109.47482 * 295.00294 * 24 14 13 26 26 H 1.08994 * 109.46764 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46932 * 299.99986 * 1 2 3 28 28 H 1.08997 * 109.47281 * 59.99752 * 1 2 3 29 29 H 1.08997 * 109.46904 * 240.00570 * 2 1 3 30 30 H 1.08997 * 109.47281 * 120.00248 * 2 1 3 31 31 H 1.09001 * 109.47300 * 29.99313 * 7 6 5 32 32 H 1.08992 * 109.47180 * 149.99797 * 7 6 5 33 33 H 1.09003 * 109.47297 * 300.00331 * 8 7 6 34 34 H 1.09000 * 109.47234 * 59.99998 * 8 7 6 35 35 H 1.08996 * 109.47201 * 179.97438 * 8 7 6 36 36 H 1.09006 * 109.46925 * 330.00808 * 10 9 6 37 37 H 1.09001 * 109.47328 * 210.00111 * 10 9 6 38 38 H 0.97001 * 119.99673 * 0.02562 * 13 11 10 39 39 H 0.96999 * 120.00301 * 180.02562 * 19 18 16 40 40 H 1.09002 * 109.47103 * 175.00047 * 24 14 13 41 41 H 1.08998 * 109.46862 * 55.00859 * 24 14 13 42 42 H 1.09002 * 109.47153 * 59.99783 * 25 24 14 43 43 H 1.09001 * 109.46832 * 299.99974 * 25 24 14 44 44 H 1.09004 * 109.47261 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2893 2.1571 -1.0424 5 8 2.6838 3.2554 -0.7253 6 6 2.7357 3.3947 0.6068 7 6 3.1751 4.6179 1.3695 8 6 4.6817 4.5452 1.6258 9 6 2.3141 2.2196 1.1320 10 6 2.1828 1.8471 2.5864 11 6 0.8019 2.2037 3.0735 12 8 0.0030 2.7100 2.3143 13 7 0.4548 1.9600 4.3528 14 6 -0.8876 2.3061 4.8262 15 1 -1.2232 3.2180 4.3323 16 6 -0.8535 2.5257 6.3167 17 1 0.0751 2.4178 6.8574 18 6 -2.0079 2.8643 6.9903 19 7 -3.1388 2.9963 6.3319 20 14 -1.9659 3.1358 8.8380 21 1 -1.0280 4.2428 9.1544 22 1 -3.3266 3.4868 9.3179 23 1 -1.5095 1.8929 9.5105 24 6 -1.8532 1.1649 4.5007 25 6 -1.9832 1.0240 2.9828 26 1 -0.3632 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.9484 5.5106 0.7865 32 1 2.6463 4.6618 2.3216 33 1 4.9085 3.6526 2.2088 34 1 5.2105 4.5013 0.6737 35 1 4.9996 5.4301 2.1770 36 1 2.9256 2.3917 3.1694 37 1 2.3437 0.7754 2.7029 38 1 1.0940 1.5554 4.9600 39 1 -3.9509 3.2349 6.8057 40 1 -2.8310 1.3826 4.9305 41 1 -1.4708 0.2346 4.9206 42 1 -1.0054 0.8063 2.5531 43 1 -2.3656 1.9544 2.5630 44 1 -2.6708 0.2106 2.7509 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183973313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:50 Heat of formation + Delta-G solvation = -24.553991 kcal Electronic energy + Delta-G solvation = -24831.648708 eV Core-core repulsion = 21364.690617 eV Total energy + Delta-G solvation = -3466.958091 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.86989 -40.62612 -37.20572 -36.45256 -35.79554 -34.24111 -33.21099 -32.38194 -31.55704 -29.76110 -28.44897 -25.57051 -25.03422 -24.54722 -23.05261 -21.81127 -20.98057 -20.66744 -18.94648 -18.45284 -17.93863 -17.31112 -17.07571 -16.58762 -16.09163 -15.61779 -15.56078 -15.07989 -14.74801 -14.57979 -14.56597 -14.14657 -13.82195 -13.64853 -13.49993 -13.34409 -13.12786 -13.06754 -12.84456 -12.66232 -12.58514 -12.38004 -12.28243 -12.17891 -12.07454 -11.92244 -11.65046 -11.41855 -11.02671 -10.90991 -10.61592 -10.46790 -10.00810 -9.54023 -8.12419 -6.29486 0.53316 1.22661 1.47489 1.48509 1.56241 1.96162 2.18957 2.40810 2.82883 3.17375 3.22530 3.49504 3.82099 3.94354 4.12630 4.21650 4.30657 4.32893 4.34834 4.45572 4.49171 4.53738 4.60985 4.63342 4.80207 4.81264 4.88395 4.92712 5.03868 5.05133 5.06039 5.15520 5.22075 5.25924 5.37765 5.40246 5.53159 5.61632 5.69623 5.85397 5.99554 6.22279 6.80042 7.09927 7.33679 7.38660 7.70498 8.92386 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.004461 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.403761 B = 6274.685602 C = 7281.463050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.042 4.042 3 C 0.030 3.970 4 N -0.399 5.399 5 O 0.079 5.921 6 C -0.018 4.018 7 C -0.045 4.045 8 C -0.141 4.141 9 C -0.185 4.185 10 C -0.056 4.056 11 C 0.500 3.500 12 O -0.580 6.580 13 N -0.705 5.705 14 C 0.282 3.718 15 H -0.005 1.005 16 C -0.545 4.545 17 H 0.074 0.926 18 C 0.015 3.985 19 N -0.917 5.917 20 Si 0.967 3.033 21 H -0.271 1.271 22 H -0.290 1.290 23 H -0.264 1.264 24 C -0.121 4.121 25 C -0.125 4.125 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.405 0.595 39 H 0.263 0.737 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.018 0.982 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.538 -3.773 -6.374 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.129 4.129 4 N -0.107 5.107 5 O 0.018 5.982 6 C -0.082 4.082 7 C -0.083 4.083 8 C -0.199 4.199 9 C -0.189 4.189 10 C -0.096 4.096 11 C 0.287 3.713 12 O -0.461 6.461 13 N -0.355 5.355 14 C 0.178 3.822 15 H 0.013 0.987 16 C -0.583 4.583 17 H 0.092 0.908 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.792 3.208 21 H -0.196 1.196 22 H -0.216 1.216 23 H -0.189 1.189 24 C -0.160 4.160 25 C -0.182 4.182 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.240 0.760 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.037 0.963 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 14.707 -3.542 -8.202 17.208 hybrid contribution -0.605 0.223 1.667 1.788 sum 14.102 -3.319 -6.535 15.893 Atomic orbital electron populations 1.21781 0.94575 1.02793 1.01490 1.20042 0.95808 0.87216 1.04937 1.23807 1.00595 1.00063 0.88473 1.73749 1.18722 0.93287 1.24946 1.84711 1.63123 1.26946 1.23371 1.24739 1.01196 0.99050 0.83213 1.20266 0.98797 0.90947 0.98272 1.21754 0.91665 1.03788 1.02662 1.20469 1.07609 0.94148 0.96691 1.20002 0.94388 1.05689 0.89473 1.20963 0.89886 0.78373 0.82049 1.90693 1.54071 1.45343 1.55974 1.46216 1.16312 1.62142 1.10815 1.18270 0.78826 0.92313 0.92785 0.98718 1.21578 0.95672 1.48348 0.92699 0.90812 1.25749 0.94923 0.94669 1.03126 1.70056 1.00091 1.47824 1.37576 0.85478 0.76937 0.78987 0.79412 1.19565 1.21636 1.18910 1.21775 1.02117 0.98005 0.94071 1.21762 1.00605 0.98676 0.97133 0.89728 0.93380 0.94347 0.89146 0.87571 0.88772 0.89083 0.91608 0.92116 0.89527 0.85155 0.85255 0.76021 0.92804 0.91544 0.93945 0.92336 0.96320 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.89 71.98 0.71 -3.31 16 2 C -0.04 -1.00 6.44 29.85 0.19 -0.81 16 3 C 0.03 0.87 6.58 43.58 0.29 1.16 16 4 N -0.40 -13.00 12.07 -49.55 -0.60 -13.60 16 5 O 0.08 2.45 11.20 71.60 0.80 3.26 16 6 C -0.02 -0.50 6.74 25.04 0.17 -0.33 16 7 C -0.04 -0.90 6.30 29.85 0.19 -0.72 16 8 C -0.14 -2.00 9.89 71.98 0.71 -1.29 16 9 C -0.18 -5.14 4.81 -19.74 -0.10 -5.24 16 10 C -0.06 -1.32 5.95 29.10 0.17 -1.15 16 11 C 0.50 17.57 6.39 87.66 0.56 18.13 16 12 O -0.58 -25.89 12.86 -3.03 -0.04 -25.93 16 13 N -0.71 -26.17 5.02 -446.11 -2.24 -28.41 16 14 C 0.28 13.74 2.24 44.24 0.10 13.84 16 15 H -0.01 -0.30 7.58 -2.39 -0.02 -0.32 16 16 C -0.54 -27.54 8.73 25.60 0.22 -27.32 16 17 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 18 C 0.02 0.80 5.29 84.65 0.45 1.25 16 19 N -0.92 -51.79 11.30 21.45 0.24 -51.55 16 20 Si 0.97 40.92 29.54 68.60 2.03 42.95 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 C -0.12 -5.75 5.45 30.59 0.17 -5.59 16 25 C -0.12 -5.46 8.50 71.98 0.61 -4.84 16 26 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.59 5.58 -2.39 -0.01 1.57 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.11 1.97 7.65 -2.39 -0.02 1.95 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.13 2.31 8.08 -2.38 -0.02 2.29 16 37 H 0.13 2.33 7.65 -2.39 -0.02 2.31 16 38 H 0.40 12.21 8.54 -92.71 -0.79 11.42 16 39 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.07 3.62 5.96 -2.39 -0.01 3.60 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 2.38 3.42 -2.39 -0.01 2.37 16 43 H 0.02 0.89 7.85 -2.39 -0.02 0.87 16 44 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -68.94 356.20 4.85 -64.08 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.21 Total: 25.41 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.45 Total: -16.21 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -2.60 Total: -93.56 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.76 Total: -22.67 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Total: -68.94 4.85 -64.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183973313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.530 kcal (2) G-P(sol) polarization free energy of solvation -68.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds