Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47291 * 2 1 4 4 N 1.30175 * 126.80216 * 270.16644 * 3 2 1 5 5 O 1.20914 * 111.60169 * 180.24988 * 4 3 2 6 6 C 1.34041 * 111.57155 * 359.74616 * 5 4 3 7 7 C 1.50704 * 126.77804 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46779 * 269.99585 * 7 6 5 9 9 C 1.35451 * 106.44273 * 359.97438 * 6 5 4 10 10 C 1.50699 * 128.00276 * 179.97438 * 9 6 5 11 11 C 1.50704 * 109.47147 * 90.00187 * 10 9 6 12 12 O 1.21286 * 119.99951 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00084 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00013 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47429 * 34.99106 * 14 13 11 16 16 C 1.50699 * 109.47029 * 154.99680 * 14 13 11 17 17 H 1.07996 * 120.00490 * 5.60153 * 16 14 13 18 18 C 1.37886 * 119.99855 * 185.60176 * 16 14 13 19 19 N 1.31508 * 119.99990 * 196.28107 * 18 16 14 20 20 Si 1.86797 * 119.99838 * 16.27590 * 18 16 14 21 21 H 1.48498 * 109.47063 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47278 * 300.00305 * 20 18 16 23 23 H 1.48502 * 109.47295 * 60.00238 * 20 18 16 24 24 C 1.53001 * 109.46588 * 274.99252 * 14 13 11 25 25 C 1.53004 * 109.47058 * 65.55247 * 24 14 13 26 26 H 1.08997 * 109.47305 * 300.00377 * 1 2 3 27 27 H 1.09000 * 109.47110 * 60.00585 * 1 2 3 28 28 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46990 * 239.99400 * 2 1 3 30 30 H 1.09007 * 109.46720 * 119.99960 * 2 1 3 31 31 H 1.08999 * 109.47235 * 29.99430 * 7 6 5 32 32 H 1.08993 * 109.46892 * 149.99595 * 7 6 5 33 33 H 1.09001 * 109.46847 * 300.00379 * 8 7 6 34 34 H 1.09004 * 109.46961 * 60.00193 * 8 7 6 35 35 H 1.08994 * 109.46761 * 179.97438 * 8 7 6 36 36 H 1.08993 * 109.47793 * 330.00037 * 10 9 6 37 37 H 1.09003 * 109.46864 * 209.99710 * 10 9 6 38 38 H 0.97006 * 120.00126 * 359.97438 * 13 11 10 39 39 H 0.97003 * 119.99803 * 354.83078 * 19 18 16 40 40 H 1.09010 * 109.46538 * 185.54829 * 24 14 13 41 41 H 1.08996 * 109.47570 * 305.54959 * 24 14 13 42 42 H 1.08998 * 109.46736 * 299.99816 * 25 24 14 43 43 H 1.09002 * 109.47064 * 59.99911 * 25 24 14 44 44 H 1.08996 * 109.47045 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1570 -1.0423 5 8 2.6840 3.2552 -0.7253 6 6 2.7358 3.3946 0.6068 7 6 3.1751 4.6179 1.3696 8 6 4.6818 4.5451 1.6259 9 6 2.3142 2.2194 1.1320 10 6 2.1828 1.8471 2.5864 11 6 0.8019 2.2037 3.0735 12 8 0.0033 2.7107 2.3144 13 7 0.4548 1.9601 4.3527 14 6 -0.8878 2.3062 4.8261 15 1 -1.6081 2.1473 4.0237 16 6 -1.2457 1.4350 6.0025 17 1 -0.5115 0.7612 6.4187 18 6 -2.5107 1.4982 6.5475 19 7 -2.7374 0.9991 7.7429 20 14 -3.9025 2.2929 5.5879 21 1 -5.1520 2.2343 6.3881 22 1 -3.5624 3.7105 5.3050 23 1 -4.0993 1.5662 4.3078 24 6 -0.9151 3.7754 5.2524 25 6 -0.6881 4.6657 4.0290 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 2.9485 5.5105 0.7865 32 1 2.6463 4.6617 2.3216 33 1 4.9085 3.6524 2.2089 34 1 5.2106 4.5012 0.6737 35 1 4.9997 5.4300 2.1771 36 1 2.9255 2.3915 3.1694 37 1 2.3437 0.7753 2.7030 38 1 1.0937 1.5549 4.9599 39 1 -2.0346 0.5205 8.2098 40 1 -1.8837 4.0070 5.6957 41 1 -0.1279 3.9560 5.9844 42 1 0.2803 4.4340 3.5857 43 1 -1.4754 4.4851 3.2971 44 1 -0.7080 5.7124 4.3327 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183973329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = -6.738782 kcal Electronic energy + Delta-G solvation = -24885.154028 eV Core-core repulsion = 21418.968462 eV Total energy + Delta-G solvation = -3466.185566 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.81625 -39.28370 -35.98809 -35.09674 -34.88672 -32.50849 -32.00619 -31.37072 -30.48779 -28.57464 -26.95168 -24.57491 -23.75813 -22.48818 -21.95479 -20.40232 -19.70400 -19.53447 -17.89354 -17.42632 -16.91656 -16.16875 -15.61690 -15.31875 -14.84568 -14.47368 -14.13342 -13.81384 -13.70026 -13.29313 -13.02558 -12.96531 -12.73055 -12.55779 -12.48683 -12.38433 -12.08442 -11.84077 -11.60779 -11.47443 -11.38217 -11.12996 -10.93208 -10.72902 -10.67192 -10.47054 -9.92600 -9.81938 -9.61644 -9.33474 -9.08819 -8.91285 -8.37257 -8.11019 -6.60859 -4.25276 1.55825 2.29071 3.15058 3.20892 3.35729 3.42178 3.56569 4.03743 4.22786 4.38721 4.42153 4.78075 4.82866 4.98289 5.03442 5.09242 5.13613 5.30831 5.34154 5.39790 5.44644 5.53285 5.62229 5.70198 5.74554 5.85142 5.88838 5.96099 6.04075 6.06267 6.11442 6.18204 6.24846 6.39398 6.65542 6.75994 6.92739 7.01404 7.33037 7.38686 7.62563 8.20153 8.39041 8.44714 8.67826 8.96225 9.43940 10.79682 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.004755 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.672738 B = 5887.211544 C = 6550.903381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C 0.038 3.962 4 N -0.371 5.371 5 O 0.094 5.906 6 C -0.020 4.020 7 C -0.043 4.043 8 C -0.149 4.149 9 C -0.167 4.167 10 C -0.068 4.068 11 C 0.502 3.498 12 O -0.540 6.540 13 N -0.702 5.702 14 C 0.248 3.752 15 H 0.040 0.960 16 C -0.616 4.616 17 H 0.061 0.939 18 C 0.040 3.960 19 N -0.899 5.899 20 Si 1.039 2.961 21 H -0.284 1.284 22 H -0.269 1.269 23 H -0.280 1.280 24 C -0.139 4.139 25 C -0.142 4.142 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.392 0.608 39 H 0.269 0.731 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.649 3.387 -10.951 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.081 4.081 3 C -0.121 4.121 4 N -0.076 5.076 5 O 0.030 5.970 6 C -0.084 4.084 7 C -0.081 4.081 8 C -0.206 4.206 9 C -0.171 4.171 10 C -0.109 4.109 11 C 0.286 3.714 12 O -0.418 6.418 13 N -0.350 5.350 14 C 0.145 3.855 15 H 0.058 0.942 16 C -0.654 4.654 17 H 0.079 0.921 18 C -0.167 4.167 19 N -0.532 5.532 20 Si 0.867 3.133 21 H -0.209 1.209 22 H -0.195 1.195 23 H -0.207 1.207 24 C -0.178 4.178 25 C -0.199 4.199 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.225 0.775 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.375 3.986 -12.696 17.506 hybrid contribution 1.901 -0.804 1.076 2.328 sum 13.276 3.183 -11.619 17.927 Atomic orbital electron populations 1.21727 0.93467 1.02032 1.03361 1.19920 0.96936 0.88136 1.03143 1.23322 1.01298 0.99097 0.88425 1.73768 1.17245 0.92701 1.23929 1.84748 1.62768 1.27025 1.22465 1.24097 1.02434 0.98167 0.83673 1.20097 0.97051 0.92011 0.98947 1.21781 0.93922 1.02631 1.02288 1.20221 1.06955 0.93886 0.96074 1.19986 0.97070 1.03596 0.90247 1.20246 0.88701 0.79472 0.82952 1.90685 1.52292 1.43579 1.55217 1.46247 1.17139 1.61588 1.10069 1.19023 0.79720 0.91753 0.95001 0.94185 1.22092 1.00393 1.26389 1.16553 0.92078 1.25653 0.99186 0.96656 0.95197 1.70878 1.38358 1.33972 1.09961 0.84128 0.76128 0.77289 0.75770 1.20931 1.19528 1.20654 1.22361 1.01834 0.96957 0.96630 1.21876 1.01746 0.97562 0.98766 0.91163 0.92692 0.91953 0.90480 0.89914 0.89416 0.88607 0.92168 0.92178 0.91298 0.88260 0.88117 0.77515 0.92107 0.91375 0.93117 0.93336 0.93104 0.95157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.90 37.16 0.37 -1.67 16 2 C -0.04 -0.55 6.44 -27.88 -0.18 -0.73 16 3 C 0.04 0.56 6.58 -82.10 -0.54 0.02 16 4 N -0.37 -5.91 12.07 33.42 0.40 -5.51 16 5 O 0.09 1.40 11.20 17.18 0.19 1.59 16 6 C -0.02 -0.27 6.74 -35.30 -0.24 -0.51 16 7 C -0.04 -0.43 6.30 -27.88 -0.18 -0.60 16 8 C -0.15 -1.14 9.89 37.16 0.37 -0.78 16 9 C -0.17 -2.36 4.81 -104.42 -0.50 -2.86 16 10 C -0.07 -0.87 5.95 -29.03 -0.17 -1.05 16 11 C 0.50 8.67 6.42 -10.98 -0.07 8.60 16 12 O -0.54 -11.17 12.85 5.55 0.07 -11.10 16 13 N -0.70 -13.05 5.03 -54.93 -0.28 -13.32 16 14 C 0.25 5.67 1.82 -69.08 -0.13 5.54 16 15 H 0.04 1.01 6.26 -51.93 -0.32 0.69 16 16 C -0.62 -16.10 9.01 -34.44 -0.31 -16.41 16 17 H 0.06 1.67 7.96 -52.49 -0.42 1.25 16 18 C 0.04 1.09 5.32 -17.82 -0.09 1.00 16 19 N -0.90 -26.30 13.70 55.43 0.76 -25.54 16 20 Si 1.04 24.79 26.27 -169.99 -4.47 20.32 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.01 5.66 56.52 0.32 -5.69 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 C -0.14 -2.99 5.28 -26.73 -0.14 -3.13 16 25 C -0.14 -2.76 8.53 37.16 0.32 -2.44 16 26 H 0.07 1.17 7.82 -51.93 -0.41 0.76 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.91 7.65 -51.93 -0.40 0.51 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.10 1.11 7.65 -51.93 -0.40 0.71 16 38 H 0.39 6.42 8.53 -40.82 -0.35 6.07 16 39 H 0.27 7.77 8.73 -40.82 -0.36 7.41 16 40 H 0.07 1.55 4.74 -51.92 -0.25 1.31 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.90 5.63 -51.93 -0.29 0.61 16 43 H 0.05 1.05 7.88 -51.93 -0.41 0.64 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -31.48 356.22 -6.56 -38.04 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.11 Total: 5.17 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.50 Total: -15.02 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.89 Total: -44.37 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.26 Total: -9.51 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -4.47 Total: 20.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.48 -6.56 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183973329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.299 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds