Wall clock time and date at job start Tue Mar 31 2020 06:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47291 * 2 1 4 4 N 1.30175 * 126.80216 * 270.16644 * 3 2 1 5 5 O 1.20914 * 111.60169 * 180.24988 * 4 3 2 6 6 C 1.34041 * 111.57155 * 359.74616 * 5 4 3 7 7 C 1.50704 * 126.77804 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46779 * 269.99585 * 7 6 5 9 9 C 1.35451 * 106.44273 * 359.97438 * 6 5 4 10 10 C 1.50699 * 128.00276 * 179.97438 * 9 6 5 11 11 C 1.50704 * 109.47147 * 90.00187 * 10 9 6 12 12 O 1.21286 * 119.99951 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00084 * 180.02562 * 11 10 9 14 14 C 1.46503 * 120.00013 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47429 * 34.99106 * 14 13 11 16 16 C 1.50699 * 109.47029 * 154.99680 * 14 13 11 17 17 H 1.07996 * 120.00490 * 5.60153 * 16 14 13 18 18 C 1.37886 * 119.99855 * 185.60176 * 16 14 13 19 19 N 1.31508 * 119.99990 * 196.28107 * 18 16 14 20 20 Si 1.86797 * 119.99838 * 16.27590 * 18 16 14 21 21 H 1.48498 * 109.47063 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47278 * 300.00305 * 20 18 16 23 23 H 1.48502 * 109.47295 * 60.00238 * 20 18 16 24 24 C 1.53001 * 109.46588 * 274.99252 * 14 13 11 25 25 C 1.53004 * 109.47058 * 65.55247 * 24 14 13 26 26 H 1.08997 * 109.47305 * 300.00377 * 1 2 3 27 27 H 1.09000 * 109.47110 * 60.00585 * 1 2 3 28 28 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46990 * 239.99400 * 2 1 3 30 30 H 1.09007 * 109.46720 * 119.99960 * 2 1 3 31 31 H 1.08999 * 109.47235 * 29.99430 * 7 6 5 32 32 H 1.08993 * 109.46892 * 149.99595 * 7 6 5 33 33 H 1.09001 * 109.46847 * 300.00379 * 8 7 6 34 34 H 1.09004 * 109.46961 * 60.00193 * 8 7 6 35 35 H 1.08994 * 109.46761 * 179.97438 * 8 7 6 36 36 H 1.08993 * 109.47793 * 330.00037 * 10 9 6 37 37 H 1.09003 * 109.46864 * 209.99710 * 10 9 6 38 38 H 0.97006 * 120.00126 * 359.97438 * 13 11 10 39 39 H 0.97003 * 119.99803 * 354.83078 * 19 18 16 40 40 H 1.09010 * 109.46538 * 185.54829 * 24 14 13 41 41 H 1.08996 * 109.47570 * 305.54959 * 24 14 13 42 42 H 1.08998 * 109.46736 * 299.99816 * 25 24 14 43 43 H 1.09002 * 109.47064 * 59.99911 * 25 24 14 44 44 H 1.08996 * 109.47045 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2895 2.1570 -1.0423 5 8 2.6840 3.2552 -0.7253 6 6 2.7358 3.3946 0.6068 7 6 3.1751 4.6179 1.3696 8 6 4.6818 4.5451 1.6259 9 6 2.3142 2.2194 1.1320 10 6 2.1828 1.8471 2.5864 11 6 0.8019 2.2037 3.0735 12 8 0.0033 2.7107 2.3144 13 7 0.4548 1.9601 4.3527 14 6 -0.8878 2.3062 4.8261 15 1 -1.6081 2.1473 4.0237 16 6 -1.2457 1.4350 6.0025 17 1 -0.5115 0.7612 6.4187 18 6 -2.5107 1.4982 6.5475 19 7 -2.7374 0.9991 7.7429 20 14 -3.9025 2.2929 5.5879 21 1 -5.1520 2.2343 6.3881 22 1 -3.5624 3.7105 5.3050 23 1 -4.0993 1.5662 4.3078 24 6 -0.9151 3.7754 5.2524 25 6 -0.6881 4.6657 4.0290 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8901 31 1 2.9485 5.5105 0.7865 32 1 2.6463 4.6617 2.3216 33 1 4.9085 3.6524 2.2089 34 1 5.2106 4.5012 0.6737 35 1 4.9997 5.4300 2.1771 36 1 2.9255 2.3915 3.1694 37 1 2.3437 0.7753 2.7030 38 1 1.0937 1.5549 4.9599 39 1 -2.0346 0.5205 8.2098 40 1 -1.8837 4.0070 5.6957 41 1 -0.1279 3.9560 5.9844 42 1 0.2803 4.4340 3.5857 43 1 -1.4754 4.4851 3.2971 44 1 -0.7080 5.7124 4.3327 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183973329.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:53 Heat of formation + Delta-G solvation = -26.503773 kcal Electronic energy + Delta-G solvation = -24886.011102 eV Core-core repulsion = 21418.968462 eV Total energy + Delta-G solvation = -3467.042640 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.90256 -40.74581 -37.34796 -36.49618 -35.81687 -34.42679 -33.39259 -32.62798 -31.54568 -29.82451 -28.61810 -25.58451 -24.68861 -24.22028 -23.24524 -21.88447 -21.12293 -20.70693 -19.76304 -18.61557 -18.00219 -17.63397 -17.10988 -16.58736 -16.01500 -15.49817 -15.49362 -15.10481 -14.85173 -14.65439 -14.56374 -14.35765 -14.14455 -13.89081 -13.74733 -13.58285 -13.40209 -13.08488 -12.71429 -12.61933 -12.46956 -12.40643 -12.29447 -12.23776 -12.08396 -11.78094 -11.64204 -11.37204 -11.09664 -10.95686 -10.65638 -10.46825 -10.05549 -9.72951 -8.76627 -6.41694 0.51585 1.19139 1.44146 1.48672 1.67237 1.85870 2.17271 2.40583 2.65839 3.02991 3.18766 3.46858 3.78474 3.90320 4.09350 4.12702 4.27823 4.29454 4.33440 4.35203 4.43432 4.44165 4.46559 4.55345 4.62527 4.75812 4.85307 4.88909 4.90145 5.01909 5.04701 5.10674 5.13690 5.16516 5.26253 5.27197 5.33944 5.38690 5.58604 5.72635 5.73532 6.04318 6.57057 6.94050 7.31699 7.32125 7.54786 8.62628 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.004755 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.672738 B = 5887.211544 C = 6550.903381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.028 3.972 4 N -0.398 5.398 5 O 0.082 5.918 6 C -0.015 4.015 7 C -0.044 4.044 8 C -0.143 4.143 9 C -0.186 4.186 10 C -0.056 4.056 11 C 0.504 3.496 12 O -0.574 6.574 13 N -0.703 5.703 14 C 0.254 3.746 15 H 0.017 0.983 16 C -0.608 4.608 17 H 0.043 0.957 18 C -0.003 4.003 19 N -0.931 5.931 20 Si 1.067 2.933 21 H -0.285 1.285 22 H -0.245 1.245 23 H -0.278 1.278 24 C -0.136 4.136 25 C -0.131 4.131 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.404 0.596 39 H 0.259 0.741 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.032 0.968 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.384 4.248 -11.513 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 C -0.131 4.131 4 N -0.106 5.106 5 O 0.021 5.979 6 C -0.078 4.078 7 C -0.082 4.082 8 C -0.201 4.201 9 C -0.190 4.190 10 C -0.096 4.096 11 C 0.291 3.709 12 O -0.454 6.454 13 N -0.352 5.352 14 C 0.149 3.851 15 H 0.035 0.965 16 C -0.646 4.646 17 H 0.061 0.939 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.891 3.109 21 H -0.211 1.211 22 H -0.170 1.170 23 H -0.204 1.204 24 C -0.174 4.174 25 C -0.189 4.189 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.239 0.761 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.159 4.857 -13.264 19.305 hybrid contribution 1.419 -1.098 1.215 2.167 sum 14.578 3.760 -12.049 19.283 Atomic orbital electron populations 1.21650 0.94570 1.02656 1.01082 1.20030 0.95782 0.87479 1.04836 1.23763 1.00767 0.99961 0.88615 1.73756 1.18626 0.93310 1.24858 1.84714 1.62962 1.26834 1.23414 1.24756 1.00912 0.98991 0.83163 1.20289 0.98611 0.90882 0.98402 1.21767 0.91920 1.03750 1.02630 1.20420 1.07911 0.94233 0.96472 1.19974 0.94426 1.05516 0.89706 1.20931 0.90101 0.78129 0.81732 1.90680 1.53845 1.44972 1.55863 1.46055 1.15808 1.62210 1.11140 1.18670 0.81548 0.92087 0.92792 0.96538 1.22303 0.99655 1.25756 1.16917 0.93918 1.26659 1.01548 0.96977 0.95243 1.70972 1.38260 1.36078 1.11354 0.83761 0.74166 0.78202 0.74801 1.21057 1.17005 1.20355 1.22242 1.01311 0.96233 0.97659 1.21750 1.01439 0.98502 0.97159 0.94341 0.93905 0.89892 0.89066 0.87931 0.88506 0.88677 0.91802 0.92233 0.89415 0.84906 0.85831 0.76125 0.93187 0.92850 0.92386 0.92630 0.94842 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.90 71.98 0.71 -3.10 16 2 C -0.04 -1.02 6.44 29.85 0.19 -0.83 16 3 C 0.03 0.79 6.58 43.58 0.29 1.08 16 4 N -0.40 -12.39 12.07 -49.58 -0.60 -12.99 16 5 O 0.08 2.38 11.20 71.64 0.80 3.18 16 6 C -0.01 -0.36 6.74 25.04 0.17 -0.19 16 7 C -0.04 -0.76 6.30 29.85 0.19 -0.57 16 8 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 9 C -0.19 -4.87 4.81 -19.74 -0.10 -4.96 16 10 C -0.06 -1.27 5.95 29.10 0.17 -1.10 16 11 C 0.50 16.45 6.42 87.66 0.56 17.01 16 12 O -0.57 -23.16 12.85 -3.05 -0.04 -23.20 16 13 N -0.70 -24.97 5.03 -446.09 -2.24 -27.21 16 14 C 0.25 11.38 1.82 44.24 0.08 11.46 16 15 H 0.02 0.84 6.26 -2.39 -0.01 0.82 16 16 C -0.61 -31.82 9.01 25.60 0.23 -31.59 16 17 H 0.04 2.35 7.96 -2.91 -0.02 2.32 16 18 C 0.00 -0.19 5.32 84.66 0.45 0.26 16 19 N -0.93 -55.38 13.70 21.45 0.29 -55.08 16 20 Si 1.07 50.00 26.27 68.60 1.80 51.80 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.25 -10.49 5.66 99.48 0.56 -9.92 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 C -0.14 -5.61 5.28 30.60 0.16 -5.45 16 25 C -0.13 -4.80 8.53 71.98 0.61 -4.19 16 26 H 0.04 1.27 7.82 -2.39 -0.02 1.25 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 1.88 8.14 -2.38 -0.02 1.87 16 30 H 0.10 1.98 7.65 -2.38 -0.02 1.96 16 31 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.69 8.05 -2.39 -0.02 1.67 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.13 2.13 8.08 -2.39 -0.02 2.11 16 37 H 0.12 2.27 7.65 -2.39 -0.02 2.25 16 38 H 0.40 12.42 8.53 -92.70 -0.79 11.63 16 39 H 0.26 15.35 8.73 -92.71 -0.81 14.54 16 40 H 0.05 2.35 4.74 -2.38 -0.01 2.34 16 41 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.05 1.93 5.63 -2.39 -0.01 1.92 16 43 H 0.03 1.32 7.88 -2.39 -0.02 1.30 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -69.14 356.22 4.48 -64.66 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.03 Total: 22.04 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.44 Total: -23.19 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -2.55 Total: -95.29 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.76 Total: -20.02 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.80 Total: 51.80 kcal Total: -69.14 4.48 -64.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183973329.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.154 kcal (2) G-P(sol) polarization free energy of solvation -69.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds