Wall clock time and date at job start Tue Mar 31 2020 07:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47320 * 2 1 4 4 C 1.53003 * 109.47209 * 183.53148 * 3 2 1 5 5 C 1.53009 * 109.47093 * 63.53231 * 3 2 1 6 6 N 1.46506 * 109.47492 * 303.53183 * 3 2 1 7 7 C 1.46502 * 119.99870 * 112.20803 * 6 3 2 8 8 C 1.50700 * 109.46760 * 85.39419 * 7 6 3 9 9 H 1.08005 * 119.99985 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99903 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99812 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00089 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47046 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47179 * 120.00330 * 12 10 8 15 15 H 1.48500 * 109.47023 * 240.00257 * 12 10 8 16 16 C 1.34772 * 119.99838 * 292.21299 * 6 3 2 17 17 O 1.21603 * 120.00382 * 188.19244 * 16 6 3 18 18 C 1.47403 * 119.99788 * 8.19043 * 16 6 3 19 19 C 1.47103 * 128.56288 * 86.72494 * 18 16 6 20 20 C 1.50702 * 127.33844 * 0.02562 * 19 18 16 21 21 N 1.30014 * 105.32756 * 179.89075 * 19 18 16 22 22 O 1.20656 * 112.30202 * 0.39717 * 21 19 18 23 23 C 1.33494 * 113.15598 * 359.72695 * 22 21 19 24 24 C 1.50702 * 126.82793 * 179.97438 * 23 22 21 25 25 H 1.08995 * 109.47508 * 175.69756 * 1 2 3 26 26 H 1.09008 * 109.46371 * 295.69294 * 1 2 3 27 27 H 1.08996 * 109.47459 * 55.69184 * 1 2 3 28 28 H 1.09005 * 109.46354 * 240.00136 * 2 1 3 29 29 H 1.08998 * 109.47065 * 120.00982 * 2 1 3 30 30 H 1.09000 * 109.47052 * 154.75396 * 4 3 2 31 31 H 1.09001 * 109.46655 * 274.74746 * 4 3 2 32 32 H 1.08997 * 109.46932 * 34.74817 * 4 3 2 33 33 H 1.09003 * 109.46390 * 299.99704 * 5 3 2 34 34 H 1.08996 * 109.47006 * 59.99506 * 5 3 2 35 35 H 1.08990 * 109.47003 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.46775 * 205.38961 * 7 6 3 37 37 H 1.08994 * 109.47253 * 325.39426 * 7 6 3 38 38 H 0.96999 * 119.99558 * 179.97438 * 11 10 8 39 39 H 1.08998 * 109.47080 * 89.99927 * 20 19 18 40 40 H 1.08999 * 109.47299 * 210.00239 * 20 19 18 41 41 H 1.08999 * 109.46719 * 329.99963 * 20 19 18 42 42 H 1.08995 * 109.47111 * 270.00735 * 24 23 22 43 43 H 1.09001 * 109.46956 * 30.00791 * 24 23 22 44 44 H 1.09000 * 109.47073 * 150.00411 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5675 1.4433 -0.0889 5 6 1.6039 2.1376 1.2914 6 7 1.4835 2.1573 -1.1514 7 6 0.5161 3.2379 -0.9449 8 6 1.2515 4.5289 -0.6926 9 1 2.3314 4.5429 -0.6862 10 6 0.5456 5.6921 -0.4698 11 7 -0.7694 5.6749 -0.4771 12 14 1.4571 7.2925 -0.1578 13 1 2.9207 7.0451 -0.2006 14 1 1.0911 8.2824 -1.2024 15 1 1.0840 7.8222 1.1784 16 6 1.8615 1.8206 -2.4005 17 8 1.5184 2.5055 -3.3449 18 6 2.6907 0.6223 -2.6218 19 6 2.2573 -0.7707 -2.8108 20 6 0.8444 -1.2949 -2.8215 21 7 3.3526 -1.4529 -2.9696 22 8 4.3376 -0.7588 -2.9065 23 6 4.0591 0.5297 -2.6965 24 6 5.0493 1.6583 -2.5664 25 1 -0.3634 -1.0247 -0.0771 26 1 -0.3632 0.4456 0.9262 27 1 -0.3634 0.5792 -0.8488 28 1 1.8932 -0.5139 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 3.9053 2.3818 -0.5283 31 1 3.9896 1.3374 0.9105 32 1 3.8956 0.6113 -0.7119 33 1 0.5157 2.1369 1.3546 34 1 2.0179 1.6057 2.1480 35 1 1.9668 3.1653 1.2912 36 1 -0.1070 3.3423 -1.8331 37 1 -0.1122 3.0038 -0.0856 38 1 -1.2660 6.4932 -0.3200 39 1 0.4547 -1.2682 -3.8391 40 1 0.8350 -2.3216 -2.4556 41 1 0.2217 -0.6739 -2.1775 42 1 5.3325 1.7745 -1.5203 43 1 5.9356 1.4342 -3.1600 44 1 4.5961 2.5825 -2.9250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187526461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:49 Heat of formation + Delta-G solvation = 16.906771 kcal Electronic energy + Delta-G solvation = -26378.744306 eV Core-core repulsion = 22913.584088 eV Total energy + Delta-G solvation = -3465.160218 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.99155 -41.31151 -38.37673 -35.97671 -35.17335 -34.70252 -33.42358 -31.47501 -30.20387 -29.46825 -28.84302 -27.70897 -25.71069 -24.70307 -23.79735 -22.29911 -21.10244 -19.85822 -18.92812 -18.66261 -17.93005 -17.24045 -17.01603 -16.44539 -16.04317 -15.90418 -15.50398 -15.02274 -14.50268 -14.43157 -14.24787 -14.17926 -14.07810 -13.94250 -13.52743 -13.42120 -13.36230 -13.31481 -12.90937 -12.77938 -12.62252 -12.57959 -12.27584 -12.19274 -12.10422 -11.93315 -11.78601 -11.63911 -11.43809 -10.91652 -10.65866 -10.58024 -10.14041 -9.42799 -8.17110 -6.28571 0.30588 0.84792 1.38367 1.40817 1.49010 1.52582 1.83179 2.31592 2.45923 3.04774 3.13763 3.26602 3.64265 3.81241 3.94725 4.03663 4.15661 4.23390 4.38541 4.47215 4.50594 4.54788 4.59278 4.62779 4.71750 4.75959 4.81651 4.85713 4.95084 4.98188 5.03247 5.05566 5.07664 5.15286 5.19765 5.22726 5.41251 5.45286 5.57502 5.67922 5.88355 6.12163 6.71309 6.79343 7.18617 7.25959 7.43612 8.90308 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.006132 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.492331 B = 4564.952091 C = 4962.964527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.161 3.839 4 C -0.170 4.170 5 C -0.143 4.143 6 N -0.568 5.568 7 C 0.264 3.736 8 C -0.524 4.524 9 H 0.056 0.944 10 C 0.010 3.990 11 N -0.929 5.929 12 Si 0.959 3.041 13 H -0.264 1.264 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.589 3.411 17 O -0.587 6.587 18 C -0.257 4.257 19 C 0.058 3.942 20 C -0.091 4.091 21 N -0.368 5.368 22 O 0.096 5.904 23 C 0.030 3.970 24 C -0.088 4.088 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.056 0.944 36 H -0.008 1.008 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.805 -13.737 3.026 17.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.077 3.923 4 C -0.228 4.228 5 C -0.201 4.201 6 N -0.297 5.297 7 C 0.144 3.856 8 C -0.563 4.563 9 H 0.074 0.926 10 C -0.189 4.189 11 N -0.569 5.569 12 Si 0.784 3.216 13 H -0.188 1.188 14 H -0.213 1.213 15 H -0.198 1.198 16 C 0.375 3.625 17 O -0.469 6.469 18 C -0.265 4.265 19 C -0.103 4.103 20 C -0.148 4.148 21 N -0.077 5.077 22 O 0.036 5.964 23 C -0.033 4.033 24 C -0.145 4.145 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.010 0.990 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.751 -14.539 2.398 17.669 hybrid contribution -0.662 2.045 -0.097 2.152 sum 9.089 -12.493 2.301 15.620 Atomic orbital electron populations 1.21806 0.95659 1.01824 1.01332 1.22346 0.96770 0.95005 1.03797 1.20671 0.93998 0.91862 0.85794 1.22876 0.93769 1.02008 1.04106 1.22073 1.01522 1.01200 0.95256 1.48267 1.42506 1.34249 1.04726 1.18846 0.87340 0.84172 0.95275 1.21624 0.93182 0.93683 1.47764 0.92601 1.25742 0.95554 1.02303 0.95259 1.70053 1.07004 1.29087 1.50739 0.85494 0.79114 0.79256 0.77744 1.18787 1.21324 1.19849 1.17162 0.79434 0.82819 0.83071 1.90757 1.58087 1.54501 1.43522 1.21918 0.94418 0.94777 1.15372 1.24819 0.97701 0.88077 0.99736 1.20612 0.86553 1.03109 1.04496 1.73556 0.94094 1.18546 1.21511 1.84487 1.29445 1.15253 1.67193 1.24804 0.94303 0.87301 0.96863 1.20925 0.96657 0.90392 1.06478 0.90660 0.92396 0.95018 0.90911 0.88916 0.92387 0.89165 0.91471 0.93132 0.89373 0.92466 0.99026 0.94606 0.92660 0.89468 0.87626 0.89641 0.86372 0.86209 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 7.71 71.98 0.55 -3.50 16 2 C -0.14 -3.71 4.53 30.59 0.14 -3.57 16 3 C 0.16 5.07 0.72 3.60 0.00 5.08 16 4 C -0.17 -4.48 6.16 71.98 0.44 -4.04 16 5 C -0.14 -4.58 7.00 71.99 0.50 -4.08 16 6 N -0.57 -23.54 1.43 -782.93 -1.12 -24.66 16 7 C 0.26 13.63 4.28 85.63 0.37 14.00 16 8 C -0.52 -28.64 7.91 25.60 0.20 -28.44 16 9 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 10 C 0.01 0.56 5.46 84.65 0.46 1.03 16 11 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 12 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 13 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 14 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 C 0.59 25.33 6.96 86.66 0.60 25.94 16 17 O -0.59 -31.49 16.71 -4.04 -0.07 -31.55 16 18 C -0.26 -8.67 3.41 -18.74 -0.06 -8.74 16 19 C 0.06 1.73 5.42 45.16 0.24 1.98 16 20 C -0.09 -2.25 9.77 71.24 0.70 -1.55 16 21 N -0.37 -10.53 12.01 -44.78 -0.54 -11.07 16 22 O 0.10 2.56 11.06 76.98 0.85 3.41 16 23 C 0.03 0.84 5.09 25.48 0.13 0.97 16 24 C -0.09 -1.86 9.13 71.24 0.65 -1.21 16 25 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 26 H 0.06 1.58 6.74 -2.38 -0.02 1.56 16 27 H 0.03 1.05 6.24 -2.39 -0.01 1.03 16 28 H 0.07 1.95 2.63 -2.38 -0.01 1.95 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.06 1.70 6.44 -2.39 -0.02 1.68 16 31 H 0.09 1.88 7.89 -2.39 -0.02 1.86 16 32 H 0.07 1.64 3.90 -2.39 -0.01 1.63 16 33 H 0.05 1.77 5.10 -2.39 -0.01 1.76 16 34 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 35 H 0.06 2.15 6.73 -2.39 -0.02 2.13 16 36 H -0.01 -0.51 7.41 -2.39 -0.02 -0.53 16 37 H 0.04 1.87 6.11 -2.39 -0.01 1.86 16 38 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.08 2.28 4.65 -2.39 -0.01 2.27 16 42 H 0.12 2.08 5.70 -2.39 -0.01 2.07 16 43 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.02 8.11 -2.39 -0.02 2.00 16 Total: -1.00 -71.01 331.40 7.40 -63.61 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.03 Total: 15.16 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 4.93 Total: -6.14 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -1.37 Total: -90.17 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: 0.78 Total: -28.15 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -71.01 7.40 -63.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187526461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.518 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds