Wall clock time and date at job start Tue Mar 31 2020 07:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46963 * 2 1 4 4 C 1.53004 * 109.46911 * 188.04919 * 3 2 1 5 5 C 1.53001 * 109.47212 * 68.04677 * 3 2 1 6 6 N 1.46498 * 109.46945 * 308.04338 * 3 2 1 7 7 C 1.46499 * 119.99735 * 118.07978 * 6 3 2 8 8 C 1.50705 * 109.47096 * 271.06376 * 7 6 3 9 9 H 1.07995 * 119.99967 * 3.82607 * 8 7 6 10 10 C 1.37881 * 119.99986 * 183.82402 * 8 7 6 11 11 N 1.31520 * 119.99842 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99865 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47649 * 89.99839 * 12 10 8 14 14 H 1.48509 * 109.46878 * 210.00033 * 12 10 8 15 15 H 1.48505 * 109.47341 * 329.99436 * 12 10 8 16 16 C 1.34776 * 120.00324 * 298.35325 * 6 3 2 17 17 O 1.21286 * 119.99926 * 166.69650 * 16 6 3 18 18 C 1.50697 * 120.00129 * 346.69876 * 16 6 3 19 19 C 1.50692 * 109.47127 * 174.37148 * 18 16 6 20 20 C 1.41384 * 126.79891 * 124.71216 * 19 18 16 21 21 C 1.35452 * 103.98559 * 179.88539 * 20 19 18 22 22 C 1.50705 * 126.77830 * 180.09405 * 21 20 19 23 23 O 1.34037 * 106.44518 * 0.37231 * 21 20 19 24 24 N 1.20926 * 111.56799 * 359.74200 * 23 21 20 25 25 H 1.09009 * 109.47140 * 307.55643 * 1 2 3 26 26 H 1.09000 * 109.47158 * 67.54950 * 1 2 3 27 27 H 1.08994 * 109.47206 * 187.55343 * 1 2 3 28 28 H 1.09002 * 109.47342 * 240.00059 * 2 1 3 29 29 H 1.09005 * 109.47250 * 119.99494 * 2 1 3 30 30 H 1.08995 * 109.46894 * 159.69791 * 4 3 2 31 31 H 1.09008 * 109.46544 * 279.69455 * 4 3 2 32 32 H 1.08995 * 109.47129 * 39.69261 * 4 3 2 33 33 H 1.08999 * 109.47061 * 302.34527 * 5 3 2 34 34 H 1.08998 * 109.47241 * 62.34466 * 5 3 2 35 35 H 1.09001 * 109.46791 * 182.34476 * 5 3 2 36 36 H 1.08998 * 109.47164 * 31.06122 * 7 6 3 37 37 H 1.09002 * 109.47428 * 151.06384 * 7 6 3 38 38 H 0.96998 * 119.99506 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.47000 * 294.37500 * 18 16 6 40 40 H 1.09005 * 109.46556 * 54.37119 * 18 16 6 41 41 H 1.08007 * 128.00758 * 0.02679 * 20 19 18 42 42 H 1.08991 * 109.47032 * 180.30213 * 22 21 20 43 43 H 1.08995 * 109.46806 * 300.30582 * 22 21 20 44 44 H 1.08997 * 109.46850 * 60.30462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5566 1.4473 -0.2020 5 6 1.7015 2.1032 1.3379 6 7 1.4002 2.1867 -1.0878 7 6 0.5525 3.3425 -0.7850 8 6 -0.8668 2.8825 -0.5723 9 1 -1.1018 1.8287 -0.5933 10 6 -1.8653 3.8072 -0.3510 11 7 -1.5790 5.0906 -0.3250 12 14 -3.6244 3.2371 -0.0867 13 1 -3.8580 3.0072 1.3616 14 1 -4.5616 4.2780 -0.5802 15 1 -3.8522 1.9727 -0.8317 16 6 1.5870 1.8046 -2.3667 17 8 0.8805 2.2551 -3.2435 18 6 2.6737 0.8175 -2.7071 19 6 2.5838 0.4553 -4.1671 20 6 3.6128 0.5616 -5.1309 21 6 3.0384 0.1153 -6.2735 22 6 3.6892 0.0087 -7.6287 23 8 1.7751 -0.2070 -5.9624 24 7 1.5420 -0.0121 -4.7920 25 1 -0.3634 0.6265 0.8148 26 1 -0.3633 0.3924 -0.9498 27 1 -0.3633 -1.0187 0.1351 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.8726 2.4278 -0.5580 31 1 4.0499 1.2283 0.7451 32 1 3.8276 0.6892 -0.9367 33 1 0.6246 2.0626 1.5010 34 1 2.2112 1.5745 2.1434 35 1 2.0277 3.1431 1.3224 36 1 0.9150 3.8321 0.1188 37 1 0.5857 4.0455 -1.6174 38 1 -2.2815 5.7411 -0.1689 39 1 3.6469 1.2638 -2.5026 40 1 2.5513 -0.0806 -2.1017 41 1 4.6236 0.9145 -4.9885 42 1 2.9687 -0.3803 -8.3481 43 1 4.0259 0.9947 -7.9485 44 1 4.5436 -0.6655 -7.5693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189916843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:55 Heat of formation + Delta-G solvation = 39.149927 kcal Electronic energy + Delta-G solvation = -25266.281384 eV Core-core repulsion = 21802.085702 eV Total energy + Delta-G solvation = -3464.195682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.69062 -39.85555 -36.76103 -34.50857 -33.37585 -32.94312 -31.64967 -30.23451 -29.84460 -27.74971 -27.07025 -26.24062 -23.09748 -22.99350 -22.61479 -21.08426 -19.72878 -17.90483 -17.30456 -17.01826 -16.58828 -15.67323 -15.39893 -14.80906 -14.52156 -14.40591 -14.00882 -13.85914 -13.53396 -13.37407 -13.04774 -12.90597 -12.60597 -12.43197 -12.23042 -12.03518 -11.93085 -11.77953 -11.33467 -11.15625 -10.97920 -10.86078 -10.78429 -10.60800 -10.40121 -10.33130 -10.06800 -9.92360 -9.70326 -9.21492 -9.13096 -8.80358 -8.32962 -7.51973 -5.95016 -3.96804 1.67585 2.44938 3.29007 3.34284 3.41562 3.42959 3.48980 3.94406 4.38841 4.51166 4.57314 4.95027 5.09379 5.10570 5.23301 5.24437 5.28636 5.32329 5.36542 5.41559 5.52156 5.57908 5.68072 5.75405 5.85254 5.93921 5.97658 6.08009 6.11798 6.19573 6.25044 6.30182 6.39327 6.60215 6.61225 6.88976 7.11859 7.18173 7.52186 7.69915 8.04215 8.35420 8.51195 8.58108 9.02910 9.18930 9.67413 11.13358 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016172 B = 0.005166 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.947235 B = 5419.098584 C = 6275.860588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.166 3.834 4 C -0.176 4.176 5 C -0.148 4.148 6 N -0.590 5.590 7 C 0.244 3.756 8 C -0.524 4.524 9 H 0.076 0.924 10 C 0.060 3.940 11 N -0.898 5.898 12 Si 0.890 3.110 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.512 3.488 17 O -0.523 6.523 18 C -0.083 4.083 19 C 0.034 3.966 20 C -0.231 4.231 21 C -0.047 4.047 22 C -0.070 4.070 23 O 0.102 5.898 24 N -0.335 5.335 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.168 0.832 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.233 -11.000 -4.585 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.080 3.920 4 C -0.234 4.234 5 C -0.205 4.205 6 N -0.323 5.323 7 C 0.126 3.874 8 C -0.563 4.563 9 H 0.093 0.907 10 C -0.141 4.141 11 N -0.538 5.538 12 Si 0.718 3.282 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.199 1.199 16 C 0.297 3.703 17 O -0.398 6.398 18 C -0.123 4.123 19 C -0.126 4.126 20 C -0.252 4.252 21 C -0.110 4.110 22 C -0.128 4.128 23 O 0.033 5.967 24 N -0.037 5.037 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.185 0.815 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.495 -10.845 -4.631 17.921 hybrid contribution -0.170 0.138 0.247 0.330 sum 13.326 -10.707 -4.383 17.647 Atomic orbital electron populations 1.22065 0.94405 1.00015 1.04626 1.22144 0.98021 0.95853 1.01190 1.20339 0.91067 0.91585 0.89016 1.22725 0.95872 1.02493 1.02290 1.22088 1.04276 1.00382 0.93713 1.48276 1.48748 1.31679 1.03563 1.19335 0.88697 0.82379 0.97021 1.21866 0.92411 0.94360 1.47628 0.90650 1.24929 0.98742 0.94797 0.95678 1.69942 1.33108 1.00427 1.50319 0.86626 0.84973 0.78580 0.78054 1.20799 1.21308 1.19903 1.19840 0.84449 0.82643 0.83390 1.90720 1.46107 1.55638 1.47357 1.20948 1.01214 1.01207 0.88962 1.23021 0.89636 1.01758 0.98144 1.22308 1.02076 1.09063 0.91775 1.24422 0.85770 1.02098 0.98744 1.20268 0.99880 1.03797 0.88842 1.84869 1.27522 1.63039 1.21313 1.73905 1.22343 1.17254 0.90173 0.91052 0.90869 0.94452 0.92217 0.91610 0.91896 0.91821 0.91751 0.89705 0.92905 0.91873 0.94480 0.94556 0.93026 0.86882 0.86861 0.81484 0.90102 0.89470 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 7.99 37.16 0.30 -2.49 16 2 C -0.13 -2.01 4.64 -26.73 -0.12 -2.13 16 3 C 0.17 2.66 0.73 -131.81 -0.10 2.57 16 4 C -0.18 -2.17 7.38 37.16 0.27 -1.90 16 5 C -0.15 -2.39 7.02 37.16 0.26 -2.13 16 6 N -0.59 -12.25 1.59 -160.17 -0.25 -12.50 16 7 C 0.24 6.26 4.46 -5.19 -0.02 6.23 16 8 C -0.52 -14.48 8.06 -34.44 -0.28 -14.75 16 9 H 0.08 2.05 3.87 -52.49 -0.20 1.85 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 12 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 16 C 0.51 11.01 6.75 -10.99 -0.07 10.93 16 17 O -0.52 -14.01 15.44 5.55 0.09 -13.92 16 18 C -0.08 -1.33 4.00 -29.04 -0.12 -1.45 16 19 C 0.03 0.58 6.05 -82.10 -0.50 0.08 16 20 C -0.23 -3.04 11.05 -39.38 -0.44 -3.48 16 21 C -0.05 -0.59 7.49 -35.30 -0.26 -0.85 16 22 C -0.07 -0.51 10.45 36.01 0.38 -0.13 16 23 O 0.10 1.67 11.20 17.18 0.19 1.86 16 24 N -0.34 -6.47 11.59 33.42 0.39 -6.08 16 25 H 0.07 1.36 5.64 -51.92 -0.29 1.07 16 26 H 0.07 1.61 5.63 -51.93 -0.29 1.32 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.85 4.85 -51.93 -0.25 0.60 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 31 H 0.06 0.66 7.94 -51.92 -0.41 0.25 16 32 H 0.06 0.69 4.76 -51.93 -0.25 0.44 16 33 H 0.08 1.60 5.51 -51.93 -0.29 1.32 16 34 H 0.05 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.06 1.07 6.81 -51.93 -0.35 0.72 16 36 H 0.04 0.94 5.72 -51.93 -0.30 0.65 16 37 H 0.04 1.08 7.61 -51.93 -0.40 0.69 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.11 1.45 6.21 -51.93 -0.32 1.13 16 40 H 0.11 1.63 4.14 -51.93 -0.21 1.42 16 41 H 0.17 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -35.24 337.49 -5.67 -40.91 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.08 Total: 1.39 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.80 Total: -7.89 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.87 Total: -44.70 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.28 Total: -12.06 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.24 -5.67 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189916843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.060 kcal (2) G-P(sol) polarization free energy of solvation -35.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds