Wall clock time and date at job start Tue Mar 31 2020 07:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46963 * 2 1 4 4 C 1.53004 * 109.46911 * 188.04919 * 3 2 1 5 5 C 1.53001 * 109.47212 * 68.04677 * 3 2 1 6 6 N 1.46498 * 109.46945 * 308.04338 * 3 2 1 7 7 C 1.46499 * 119.99735 * 118.07978 * 6 3 2 8 8 C 1.50705 * 109.47096 * 271.06376 * 7 6 3 9 9 H 1.07995 * 119.99967 * 3.82607 * 8 7 6 10 10 C 1.37881 * 119.99986 * 183.82402 * 8 7 6 11 11 N 1.31520 * 119.99842 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99865 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47649 * 89.99839 * 12 10 8 14 14 H 1.48509 * 109.46878 * 210.00033 * 12 10 8 15 15 H 1.48505 * 109.47341 * 329.99436 * 12 10 8 16 16 C 1.34776 * 120.00324 * 298.35325 * 6 3 2 17 17 O 1.21286 * 119.99926 * 166.69650 * 16 6 3 18 18 C 1.50697 * 120.00129 * 346.69876 * 16 6 3 19 19 C 1.50692 * 109.47127 * 174.37148 * 18 16 6 20 20 C 1.41384 * 126.79891 * 124.71216 * 19 18 16 21 21 C 1.35452 * 103.98559 * 179.88539 * 20 19 18 22 22 C 1.50705 * 126.77830 * 180.09405 * 21 20 19 23 23 O 1.34037 * 106.44518 * 0.37231 * 21 20 19 24 24 N 1.20926 * 111.56799 * 359.74200 * 23 21 20 25 25 H 1.09009 * 109.47140 * 307.55643 * 1 2 3 26 26 H 1.09000 * 109.47158 * 67.54950 * 1 2 3 27 27 H 1.08994 * 109.47206 * 187.55343 * 1 2 3 28 28 H 1.09002 * 109.47342 * 240.00059 * 2 1 3 29 29 H 1.09005 * 109.47250 * 119.99494 * 2 1 3 30 30 H 1.08995 * 109.46894 * 159.69791 * 4 3 2 31 31 H 1.09008 * 109.46544 * 279.69455 * 4 3 2 32 32 H 1.08995 * 109.47129 * 39.69261 * 4 3 2 33 33 H 1.08999 * 109.47061 * 302.34527 * 5 3 2 34 34 H 1.08998 * 109.47241 * 62.34466 * 5 3 2 35 35 H 1.09001 * 109.46791 * 182.34476 * 5 3 2 36 36 H 1.08998 * 109.47164 * 31.06122 * 7 6 3 37 37 H 1.09002 * 109.47428 * 151.06384 * 7 6 3 38 38 H 0.96998 * 119.99506 * 180.02562 * 11 10 8 39 39 H 1.09001 * 109.47000 * 294.37500 * 18 16 6 40 40 H 1.09005 * 109.46556 * 54.37119 * 18 16 6 41 41 H 1.08007 * 128.00758 * 0.02679 * 20 19 18 42 42 H 1.08991 * 109.47032 * 180.30213 * 22 21 20 43 43 H 1.08995 * 109.46806 * 300.30582 * 22 21 20 44 44 H 1.08997 * 109.46850 * 60.30462 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5566 1.4473 -0.2020 5 6 1.7015 2.1032 1.3379 6 7 1.4002 2.1867 -1.0878 7 6 0.5525 3.3425 -0.7850 8 6 -0.8668 2.8825 -0.5723 9 1 -1.1018 1.8287 -0.5933 10 6 -1.8653 3.8072 -0.3510 11 7 -1.5790 5.0906 -0.3250 12 14 -3.6244 3.2371 -0.0867 13 1 -3.8580 3.0072 1.3616 14 1 -4.5616 4.2780 -0.5802 15 1 -3.8522 1.9727 -0.8317 16 6 1.5870 1.8046 -2.3667 17 8 0.8805 2.2551 -3.2435 18 6 2.6737 0.8175 -2.7071 19 6 2.5838 0.4553 -4.1671 20 6 3.6128 0.5616 -5.1309 21 6 3.0384 0.1153 -6.2735 22 6 3.6892 0.0087 -7.6287 23 8 1.7751 -0.2070 -5.9624 24 7 1.5420 -0.0121 -4.7920 25 1 -0.3634 0.6265 0.8148 26 1 -0.3633 0.3924 -0.9498 27 1 -0.3633 -1.0187 0.1351 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.8726 2.4278 -0.5580 31 1 4.0499 1.2283 0.7451 32 1 3.8276 0.6892 -0.9367 33 1 0.6246 2.0626 1.5010 34 1 2.2112 1.5745 2.1434 35 1 2.0277 3.1431 1.3224 36 1 0.9150 3.8321 0.1188 37 1 0.5857 4.0455 -1.6174 38 1 -2.2815 5.7411 -0.1689 39 1 3.6469 1.2638 -2.5026 40 1 2.5513 -0.0806 -2.1017 41 1 4.6236 0.9145 -4.9885 42 1 2.9687 -0.3803 -8.3481 43 1 4.0259 0.9947 -7.9485 44 1 4.5436 -0.6655 -7.5693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189916843.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:55 Heat of formation + Delta-G solvation = 15.829367 kcal Electronic energy + Delta-G solvation = -25267.292639 eV Core-core repulsion = 21802.085702 eV Total energy + Delta-G solvation = -3465.206937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.86029 -41.40594 -38.34759 -35.82137 -35.03214 -34.20814 -33.36413 -31.69390 -31.20926 -28.87010 -28.48376 -27.63886 -24.80101 -24.40593 -23.99233 -22.51073 -20.97697 -19.40221 -18.76406 -18.43597 -18.12528 -17.18717 -17.02818 -16.35941 -16.30634 -15.75437 -15.31190 -15.21846 -14.60461 -14.50012 -14.28472 -14.11339 -13.89989 -13.77588 -13.55793 -13.44417 -13.25289 -13.09527 -12.91369 -12.88827 -12.65841 -12.37668 -12.18109 -12.06270 -12.01189 -11.84238 -11.72642 -11.33077 -11.14102 -10.93670 -10.58821 -10.51056 -10.16484 -9.29850 -8.15618 -6.24481 0.65275 1.28986 1.30970 1.34657 1.43901 1.81570 2.31183 2.38247 2.48494 3.13953 3.22223 3.51896 3.75229 3.84692 4.04381 4.11247 4.19522 4.25880 4.29968 4.45736 4.55752 4.67335 4.68266 4.79195 4.81793 4.85212 4.87949 4.95676 5.00054 5.05440 5.09316 5.16536 5.20841 5.23271 5.30372 5.34052 5.44222 5.48672 5.67410 5.77245 5.97778 6.19171 6.80892 6.91192 7.37663 7.47246 7.54907 8.91516 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016172 B = 0.005166 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.947235 B = 5419.098584 C = 6275.860588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.154 3.846 4 C -0.170 4.170 5 C -0.145 4.145 6 N -0.589 5.589 7 C 0.262 3.738 8 C -0.527 4.527 9 H 0.077 0.923 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.950 3.050 13 H -0.262 1.262 14 H -0.286 1.286 15 H -0.280 1.280 16 C 0.502 3.498 17 O -0.591 6.591 18 C -0.068 4.068 19 C 0.010 3.990 20 C -0.233 4.233 21 C -0.041 4.041 22 C -0.069 4.069 23 O 0.083 5.917 24 N -0.392 5.392 25 H 0.054 0.946 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.037 0.963 37 H -0.018 1.018 38 H 0.261 0.739 39 H 0.152 0.848 40 H 0.134 0.866 41 H 0.206 0.794 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.205 -13.350 -4.030 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.070 3.930 4 C -0.227 4.227 5 C -0.202 4.202 6 N -0.320 5.320 7 C 0.141 3.859 8 C -0.566 4.566 9 H 0.094 0.906 10 C -0.193 4.193 11 N -0.575 5.575 12 Si 0.776 3.224 13 H -0.187 1.187 14 H -0.212 1.212 15 H -0.205 1.205 16 C 0.290 3.710 17 O -0.471 6.471 18 C -0.107 4.107 19 C -0.148 4.148 20 C -0.254 4.254 21 C -0.104 4.104 22 C -0.126 4.126 23 O 0.016 5.984 24 N -0.096 5.096 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.000 1.000 38 H 0.070 0.930 39 H 0.170 0.830 40 H 0.151 0.849 41 H 0.223 0.777 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.506 -13.235 -4.043 21.540 hybrid contribution -1.058 0.859 0.034 1.363 sum 15.448 -12.376 -4.010 20.196 Atomic orbital electron populations 1.21945 0.97223 1.00491 1.01137 1.22161 0.95339 0.95378 1.03718 1.20816 0.93625 0.91486 0.87069 1.22669 0.92202 1.02971 1.04902 1.22059 1.02460 1.00256 0.95408 1.48285 1.47969 1.30624 1.05165 1.18776 0.89169 0.83490 0.94482 1.22214 0.93618 0.94451 1.46319 0.90551 1.25740 1.02737 0.94953 0.95835 1.70064 1.34230 1.01425 1.51739 0.85680 0.80311 0.77593 0.78852 1.18676 1.21217 1.20498 1.20838 0.84899 0.82688 0.82587 1.90680 1.48856 1.58335 1.49236 1.20966 1.00309 1.00224 0.89177 1.23456 0.90509 1.01857 0.99017 1.22755 1.03007 1.09010 0.90646 1.25442 0.84162 0.99955 1.00870 1.20557 1.00553 1.05551 0.85889 1.84792 1.29621 1.63524 1.20488 1.73897 1.24412 1.19747 0.91554 0.92658 0.95740 0.92366 0.91056 0.87438 0.92677 0.88484 0.89460 0.93130 0.88604 0.93440 0.94566 0.99963 0.93018 0.83030 0.84887 0.77711 0.89362 0.87821 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 7.99 71.98 0.58 -4.82 16 2 C -0.13 -3.47 4.64 30.60 0.14 -3.33 16 3 C 0.15 4.65 0.73 3.61 0.00 4.65 16 4 C -0.17 -3.48 7.38 71.98 0.53 -2.95 16 5 C -0.14 -4.49 7.02 71.98 0.51 -3.99 16 6 N -0.59 -25.02 1.59 -779.05 -1.24 -26.26 16 7 C 0.26 14.21 4.46 85.63 0.38 14.59 16 8 C -0.53 -30.65 8.06 25.60 0.21 -30.44 16 9 H 0.08 4.37 3.87 -2.91 -0.01 4.36 16 10 C 0.00 0.29 5.46 84.65 0.46 0.76 16 11 N -0.93 -58.28 13.29 21.45 0.28 -58.00 16 12 Si 0.95 47.31 29.54 68.60 2.03 49.34 16 13 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 15 H -0.28 -14.05 7.11 99.48 0.71 -13.35 16 16 C 0.50 22.13 6.75 87.66 0.59 22.72 16 17 O -0.59 -33.63 15.44 -3.05 -0.05 -33.68 16 18 C -0.07 -2.05 4.00 29.10 0.12 -1.94 16 19 C 0.01 0.34 6.05 43.58 0.26 0.60 16 20 C -0.23 -5.59 11.05 22.40 0.25 -5.35 16 21 C -0.04 -0.96 7.49 25.04 0.19 -0.77 16 22 C -0.07 -0.77 10.45 71.24 0.74 -0.02 16 23 O 0.08 2.75 11.20 71.66 0.80 3.55 16 24 N -0.39 -15.49 11.59 -49.56 -0.57 -16.06 16 25 H 0.05 2.13 5.64 -2.38 -0.01 2.11 16 26 H 0.02 1.09 5.63 -2.39 -0.01 1.08 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.79 4.85 -2.39 -0.01 1.78 16 29 H 0.11 2.11 8.13 -2.38 -0.02 2.09 16 30 H 0.05 1.25 8.12 -2.39 -0.02 1.23 16 31 H 0.10 1.42 7.94 -2.38 -0.02 1.40 16 32 H 0.09 1.40 4.76 -2.39 -0.01 1.38 16 33 H 0.05 1.92 5.51 -2.39 -0.01 1.91 16 34 H 0.10 2.12 8.09 -2.39 -0.02 2.10 16 35 H 0.05 1.60 6.81 -2.39 -0.02 1.58 16 36 H 0.04 1.96 5.72 -2.39 -0.01 1.94 16 37 H -0.02 -1.15 7.61 -2.39 -0.02 -1.16 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.15 3.34 6.21 -2.39 -0.01 3.32 16 40 H 0.13 3.45 4.14 -2.38 -0.01 3.44 16 41 H 0.21 3.08 8.06 -2.91 -0.02 3.05 16 42 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -86.35 337.49 7.24 -79.11 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.03 Total: 12.27 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 4.96 Total: -10.28 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -1.53 Total: -100.32 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: 0.76 Total: -30.12 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -86.35 7.24 -79.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189916843.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.940 kcal (2) G-P(sol) polarization free energy of solvation -86.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds