Wall clock time and date at job start Tue Mar 31 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 C 1.52998 * 109.46868 * 171.85071 * 3 2 1 5 5 C 1.52993 * 109.46944 * 51.84753 * 3 2 1 6 6 N 1.46501 * 109.46974 * 291.84932 * 3 2 1 7 7 C 1.46505 * 120.00009 * 118.26706 * 6 3 2 8 8 C 1.50695 * 109.47020 * 263.89195 * 7 6 3 9 9 H 1.08003 * 119.99929 * 3.39510 * 8 7 6 10 10 C 1.37874 * 119.99916 * 183.40700 * 8 7 6 11 11 N 1.31516 * 120.00228 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00173 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47452 * 59.99157 * 12 10 8 14 14 H 1.48496 * 109.47403 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47206 * 299.99448 * 12 10 8 16 16 C 1.34776 * 119.99801 * 298.26421 * 6 3 2 17 17 O 1.21697 * 119.99467 * 183.86444 * 16 6 3 18 18 C 1.46721 * 120.00239 * 3.86713 * 16 6 3 19 19 O 1.35338 * 126.64441 * 354.18648 * 18 16 6 20 20 C 1.33659 * 107.68362 * 180.02562 * 19 18 16 21 21 C 1.50708 * 125.42202 * 180.02562 * 20 19 18 22 22 N 1.30619 * 109.15888 * 0.02562 * 20 19 18 23 23 C 1.33694 * 108.99069 * 359.97438 * 22 20 19 24 24 C 1.50699 * 126.27288 * 179.73556 * 23 22 20 25 25 H 1.09009 * 109.46675 * 306.10539 * 1 2 3 26 26 H 1.08993 * 109.47670 * 66.10223 * 1 2 3 27 27 H 1.08998 * 109.47618 * 186.11010 * 1 2 3 28 28 H 1.09003 * 109.46701 * 240.00467 * 2 1 3 29 29 H 1.08996 * 109.47064 * 120.00329 * 2 1 3 30 30 H 1.09003 * 109.47055 * 205.72887 * 4 3 2 31 31 H 1.08999 * 109.47387 * 325.72921 * 4 3 2 32 32 H 1.08997 * 109.47043 * 85.73160 * 4 3 2 33 33 H 1.08999 * 109.47754 * 300.73273 * 5 3 2 34 34 H 1.09004 * 109.47476 * 60.73549 * 5 3 2 35 35 H 1.09009 * 109.47091 * 180.73293 * 5 3 2 36 36 H 1.09005 * 109.46666 * 23.89056 * 7 6 3 37 37 H 1.09002 * 109.46933 * 143.88727 * 7 6 3 38 38 H 0.96993 * 120.00814 * 180.02562 * 11 10 8 39 39 H 1.09000 * 109.46980 * 270.00215 * 21 20 19 40 40 H 1.08997 * 109.47192 * 29.99653 * 21 20 19 41 41 H 1.08996 * 109.47087 * 150.00696 * 21 20 19 42 42 H 1.09007 * 109.46801 * 90.02263 * 24 23 22 43 43 H 1.08999 * 109.47154 * 210.02690 * 24 23 22 44 44 H 1.08997 * 109.46791 * 330.02995 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5563 1.4473 0.2045 5 6 1.3699 2.2203 1.1343 6 7 1.7182 2.0742 -1.2820 7 6 0.8385 3.2451 -1.3213 8 6 -0.5711 2.8045 -1.6211 9 1 -0.8001 1.7531 -1.7134 10 6 -1.5683 3.7437 -1.7778 11 7 -1.2895 5.0240 -1.6650 12 14 -3.3155 3.1976 -2.1501 13 1 -3.8085 2.3309 -1.0496 14 1 -4.1918 4.3903 -2.2707 15 1 -3.3353 2.4373 -3.4256 16 6 2.2314 1.5783 -2.4253 17 8 2.0215 2.1440 -3.4821 18 6 3.0430 0.3563 -2.3957 19 8 3.4505 -0.3163 -1.2943 20 6 4.1660 -1.3687 -1.7028 21 6 4.8116 -2.3892 -0.8011 22 7 4.2165 -1.3722 -3.0080 23 6 3.5335 -0.3209 -3.4726 24 6 3.3460 0.0511 -4.9209 25 1 -0.3633 0.6056 0.8304 26 1 -0.3634 0.4163 -0.9395 27 1 -0.3634 -1.0218 0.1094 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8597 2.3942 0.6509 31 1 3.8363 0.6275 0.8660 32 1 4.0530 1.3236 -0.7578 33 1 0.2889 2.2059 0.9957 34 1 1.6200 1.7580 2.0892 35 1 1.7235 3.2514 1.1262 36 1 0.8635 3.7509 -0.3560 37 1 1.1786 3.9292 -2.0988 38 1 -1.9910 5.6847 -1.7749 39 1 5.8224 -2.0661 -0.5520 40 1 4.2264 -2.4882 0.1131 41 1 4.8532 -3.3510 -1.3120 42 1 2.4466 -0.4297 -5.3060 43 1 3.2455 1.1329 -5.0080 44 1 4.2102 -0.2811 -5.4961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189917213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:46 Heat of formation + Delta-G solvation = 21.998244 kcal Electronic energy + Delta-G solvation = -26200.975106 eV Core-core repulsion = 22736.035671 eV Total energy + Delta-G solvation = -3464.939435 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.51224 -39.48291 -37.14483 -34.99332 -33.29799 -32.54508 -31.85907 -29.97162 -29.27205 -28.74080 -26.58333 -26.23700 -23.34399 -22.96009 -21.59568 -21.50707 -20.67427 -18.38486 -17.36196 -16.84172 -16.39501 -15.52137 -15.35443 -14.64760 -14.37733 -14.15987 -13.92336 -13.83582 -13.37042 -13.23892 -13.07736 -12.85984 -12.71219 -12.44268 -12.28321 -12.12500 -11.90484 -11.72239 -11.43535 -11.30631 -11.08734 -10.96592 -10.69847 -10.59768 -10.52050 -10.40784 -10.30575 -10.04195 -9.78468 -9.41736 -9.10053 -8.54524 -8.41931 -7.68130 -6.04777 -4.08481 1.14126 2.61363 2.69140 3.31000 3.35884 3.38675 3.67985 3.82044 4.05515 4.43911 4.83154 4.94440 5.07133 5.18633 5.22005 5.29317 5.31430 5.35456 5.43360 5.64287 5.71584 5.78285 5.89430 5.90914 5.97615 6.05246 6.07866 6.11778 6.16448 6.23079 6.34429 6.36631 6.54837 6.58508 6.62686 6.78890 6.96270 7.04617 7.42336 7.52352 7.77756 7.94481 8.20684 8.31772 8.80788 8.99245 9.55801 11.03325 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.006054 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.561981 B = 4624.048613 C = 5184.609907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.142 4.142 3 C 0.166 3.834 4 C -0.157 4.157 5 C -0.150 4.150 6 N -0.572 5.572 7 C 0.241 3.759 8 C -0.524 4.524 9 H 0.065 0.935 10 C 0.064 3.936 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.592 3.408 17 O -0.513 6.513 18 C -0.100 4.100 19 O -0.156 6.156 20 C 0.179 3.821 21 C -0.058 4.058 22 N -0.492 5.492 23 C 0.064 3.936 24 C -0.079 4.079 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.098 0.902 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.741 -12.114 5.304 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.180 4.180 3 C 0.081 3.919 4 C -0.214 4.214 5 C -0.207 4.207 6 N -0.303 5.303 7 C 0.122 3.878 8 C -0.562 4.562 9 H 0.083 0.917 10 C -0.138 4.138 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.377 3.623 17 O -0.391 6.391 18 C -0.154 4.154 19 O -0.043 6.043 20 C -0.026 4.026 21 C -0.115 4.115 22 N -0.223 5.223 23 C -0.060 4.060 24 C -0.136 4.136 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.056 0.944 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.116 0.884 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.818 -12.016 4.499 16.783 hybrid contribution -1.353 0.126 0.328 1.398 sum 9.466 -11.891 4.827 15.947 Atomic orbital electron populations 1.22108 0.95108 1.00060 1.04612 1.22512 0.96910 0.96015 1.02523 1.20397 0.93764 0.92925 0.84855 1.22546 0.95531 1.01277 1.02067 1.22175 1.03306 0.99576 0.95621 1.48318 1.46614 1.31329 1.04000 1.19490 0.87684 0.81789 0.98800 1.21499 0.92573 0.93414 1.48730 0.91666 1.24887 0.98960 0.94763 0.95210 1.69912 1.33461 1.00075 1.49835 0.86646 0.84290 0.78025 0.79024 1.20253 1.21227 1.20203 1.16315 0.79477 0.81373 0.85119 1.90821 1.60077 1.58509 1.29714 1.23307 1.08238 0.99749 0.84143 1.85545 1.51773 1.32618 1.34365 1.26506 0.94437 0.90548 0.91077 1.20269 1.00110 0.94242 0.96919 1.70263 1.21554 1.22041 1.08426 1.21972 0.95483 0.90880 0.97691 1.20353 1.02158 1.04121 0.86968 0.92031 0.90334 0.94389 0.89832 0.92155 0.92660 0.91985 0.91838 0.89563 0.92633 0.91958 0.93687 0.93965 0.92711 0.88972 0.89303 0.88365 0.90434 0.88377 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.29 37.16 0.35 -2.45 16 2 C -0.14 -2.24 4.11 -26.73 -0.11 -2.35 16 3 C 0.17 2.82 0.74 -131.82 -0.10 2.72 16 4 C -0.16 -2.29 7.55 37.16 0.28 -2.01 16 5 C -0.15 -2.46 6.46 37.15 0.24 -2.22 16 6 N -0.57 -12.09 2.12 -161.68 -0.34 -12.43 16 7 C 0.24 6.02 4.50 -5.19 -0.02 5.99 16 8 C -0.52 -14.06 8.82 -34.44 -0.30 -14.37 16 9 H 0.07 1.75 4.99 -52.48 -0.26 1.48 16 10 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 11 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 12 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.59 12.86 6.98 -12.83 -0.09 12.77 16 17 O -0.51 -12.69 14.42 5.19 0.07 -12.62 16 18 C -0.10 -1.83 4.79 -36.84 -0.18 -2.00 16 19 O -0.16 -2.36 2.81 4.45 0.01 -2.34 16 20 C 0.18 2.40 8.32 -12.79 -0.11 2.29 16 21 C -0.06 -0.45 10.51 36.01 0.38 -0.07 16 22 N -0.49 -7.76 11.26 -7.07 -0.08 -7.84 16 23 C 0.06 1.10 7.16 -82.46 -0.59 0.51 16 24 C -0.08 -1.23 9.94 36.01 0.36 -0.87 16 25 H 0.06 1.04 5.93 -51.92 -0.31 0.74 16 26 H 0.08 1.63 4.92 -51.93 -0.26 1.37 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 1.41 3.84 -56.08 -0.22 1.20 16 29 H 0.06 0.80 7.93 -51.93 -0.41 0.38 16 30 H 0.05 0.78 7.89 -51.93 -0.41 0.37 16 31 H 0.06 0.75 7.62 -51.93 -0.40 0.35 16 32 H 0.06 1.02 4.64 -51.93 -0.24 0.78 16 33 H 0.09 1.61 5.51 -51.93 -0.29 1.32 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.06 6.96 -51.92 -0.36 0.70 16 36 H 0.05 1.12 5.46 -51.93 -0.28 0.84 16 37 H 0.04 1.21 7.56 -51.93 -0.39 0.81 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 43 H 0.10 1.68 6.36 -51.93 -0.33 1.35 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 334.29 15.07 5.04 5.04 Total: -1.00 -31.38 334.29 -5.82 -37.21 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.25 Total: 1.99 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 0.01 Total: -0.39 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.31 Total: -45.33 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.38 -5.82 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189917213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.204 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds