Wall clock time and date at job start Tue Mar 31 2020 07:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47220 * 2 1 4 4 C 1.52998 * 109.46868 * 171.85071 * 3 2 1 5 5 C 1.52993 * 109.46944 * 51.84753 * 3 2 1 6 6 N 1.46501 * 109.46974 * 291.84932 * 3 2 1 7 7 C 1.46505 * 120.00009 * 118.26706 * 6 3 2 8 8 C 1.50695 * 109.47020 * 263.89195 * 7 6 3 9 9 H 1.08003 * 119.99929 * 3.39510 * 8 7 6 10 10 C 1.37874 * 119.99916 * 183.40700 * 8 7 6 11 11 N 1.31516 * 120.00228 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00173 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47452 * 59.99157 * 12 10 8 14 14 H 1.48496 * 109.47403 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47206 * 299.99448 * 12 10 8 16 16 C 1.34776 * 119.99801 * 298.26421 * 6 3 2 17 17 O 1.21697 * 119.99467 * 183.86444 * 16 6 3 18 18 C 1.46721 * 120.00239 * 3.86713 * 16 6 3 19 19 O 1.35338 * 126.64441 * 354.18648 * 18 16 6 20 20 C 1.33659 * 107.68362 * 180.02562 * 19 18 16 21 21 C 1.50708 * 125.42202 * 180.02562 * 20 19 18 22 22 N 1.30619 * 109.15888 * 0.02562 * 20 19 18 23 23 C 1.33694 * 108.99069 * 359.97438 * 22 20 19 24 24 C 1.50699 * 126.27288 * 179.73556 * 23 22 20 25 25 H 1.09009 * 109.46675 * 306.10539 * 1 2 3 26 26 H 1.08993 * 109.47670 * 66.10223 * 1 2 3 27 27 H 1.08998 * 109.47618 * 186.11010 * 1 2 3 28 28 H 1.09003 * 109.46701 * 240.00467 * 2 1 3 29 29 H 1.08996 * 109.47064 * 120.00329 * 2 1 3 30 30 H 1.09003 * 109.47055 * 205.72887 * 4 3 2 31 31 H 1.08999 * 109.47387 * 325.72921 * 4 3 2 32 32 H 1.08997 * 109.47043 * 85.73160 * 4 3 2 33 33 H 1.08999 * 109.47754 * 300.73273 * 5 3 2 34 34 H 1.09004 * 109.47476 * 60.73549 * 5 3 2 35 35 H 1.09009 * 109.47091 * 180.73293 * 5 3 2 36 36 H 1.09005 * 109.46666 * 23.89056 * 7 6 3 37 37 H 1.09002 * 109.46933 * 143.88727 * 7 6 3 38 38 H 0.96993 * 120.00814 * 180.02562 * 11 10 8 39 39 H 1.09000 * 109.46980 * 270.00215 * 21 20 19 40 40 H 1.08997 * 109.47192 * 29.99653 * 21 20 19 41 41 H 1.08996 * 109.47087 * 150.00696 * 21 20 19 42 42 H 1.09007 * 109.46801 * 90.02263 * 24 23 22 43 43 H 1.08999 * 109.47154 * 210.02690 * 24 23 22 44 44 H 1.08997 * 109.46791 * 330.02995 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5563 1.4473 0.2045 5 6 1.3699 2.2203 1.1343 6 7 1.7182 2.0742 -1.2820 7 6 0.8385 3.2451 -1.3213 8 6 -0.5711 2.8045 -1.6211 9 1 -0.8001 1.7531 -1.7134 10 6 -1.5683 3.7437 -1.7778 11 7 -1.2895 5.0240 -1.6650 12 14 -3.3155 3.1976 -2.1501 13 1 -3.8085 2.3309 -1.0496 14 1 -4.1918 4.3903 -2.2707 15 1 -3.3353 2.4373 -3.4256 16 6 2.2314 1.5783 -2.4253 17 8 2.0215 2.1440 -3.4821 18 6 3.0430 0.3563 -2.3957 19 8 3.4505 -0.3163 -1.2943 20 6 4.1660 -1.3687 -1.7028 21 6 4.8116 -2.3892 -0.8011 22 7 4.2165 -1.3722 -3.0080 23 6 3.5335 -0.3209 -3.4726 24 6 3.3460 0.0511 -4.9209 25 1 -0.3633 0.6056 0.8304 26 1 -0.3634 0.4163 -0.9395 27 1 -0.3634 -1.0218 0.1094 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.8597 2.3942 0.6509 31 1 3.8363 0.6275 0.8660 32 1 4.0530 1.3236 -0.7578 33 1 0.2889 2.2059 0.9957 34 1 1.6200 1.7580 2.0892 35 1 1.7235 3.2514 1.1262 36 1 0.8635 3.7509 -0.3560 37 1 1.1786 3.9292 -2.0988 38 1 -1.9910 5.6847 -1.7749 39 1 5.8224 -2.0661 -0.5520 40 1 4.2264 -2.4882 0.1131 41 1 4.8532 -3.3510 -1.3120 42 1 2.4466 -0.4297 -5.3060 43 1 3.2455 1.1329 -5.0080 44 1 4.2102 -0.2811 -5.4961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189917213.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:45 Heat of formation + Delta-G solvation = 0.379568 kcal Electronic energy + Delta-G solvation = -26201.912562 eV Core-core repulsion = 22736.035671 eV Total energy + Delta-G solvation = -3465.876891 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.72407 -41.03715 -38.68282 -36.25350 -35.21647 -33.68231 -33.55628 -31.34170 -30.42808 -30.18128 -27.93811 -27.84366 -24.89533 -24.54055 -23.02155 -22.71202 -22.01535 -19.83521 -18.76787 -18.59591 -17.90786 -17.20619 -16.66370 -16.30933 -16.13092 -15.50724 -15.17616 -15.11857 -14.73610 -14.46344 -14.31432 -14.21089 -13.89487 -13.75987 -13.57489 -13.41322 -13.20723 -13.12296 -12.92511 -12.89092 -12.64139 -12.53602 -12.29624 -12.12276 -12.06857 -11.85121 -11.76354 -11.61677 -11.26647 -11.12711 -10.68976 -10.56264 -9.88024 -9.37466 -8.17187 -6.27901 -0.14992 1.35977 1.39455 1.41362 1.44564 1.47228 2.10345 2.30814 2.43525 2.98353 3.13360 3.57324 3.70884 3.78461 4.03607 4.12313 4.27304 4.40912 4.46510 4.63239 4.65901 4.66976 4.71431 4.73361 4.77639 4.80914 4.85714 4.88619 4.91078 5.05725 5.09401 5.12863 5.17669 5.23242 5.27705 5.34996 5.40027 5.44502 5.59606 5.76488 5.88384 6.12995 6.50913 6.70440 6.81714 7.19549 7.42104 8.90127 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.006054 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.561981 B = 4624.048613 C = 5184.609907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.135 4.135 3 C 0.156 3.844 4 C -0.149 4.149 5 C -0.145 4.145 6 N -0.576 5.576 7 C 0.258 3.742 8 C -0.527 4.527 9 H 0.064 0.936 10 C 0.012 3.988 11 N -0.928 5.928 12 Si 0.953 3.047 13 H -0.262 1.262 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.585 3.415 17 O -0.563 6.563 18 C -0.127 4.127 19 O -0.149 6.149 20 C 0.206 3.794 21 C -0.061 4.061 22 N -0.515 5.515 23 C 0.067 3.933 24 C -0.078 4.078 25 H 0.060 0.940 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.044 0.956 37 H -0.006 1.006 38 H 0.264 0.736 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.909 -15.421 7.549 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.173 4.173 3 C 0.072 3.928 4 C -0.206 4.206 5 C -0.202 4.202 6 N -0.305 5.305 7 C 0.138 3.862 8 C -0.565 4.565 9 H 0.082 0.918 10 C -0.186 4.186 11 N -0.568 5.568 12 Si 0.779 3.221 13 H -0.186 1.186 14 H -0.206 1.206 15 H -0.207 1.207 16 C 0.373 3.627 17 O -0.446 6.446 18 C -0.181 4.181 19 O -0.038 6.038 20 C 0.001 3.999 21 C -0.117 4.117 22 N -0.246 5.246 23 C -0.057 4.057 24 C -0.135 4.135 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.005 -15.359 6.780 20.639 hybrid contribution -1.594 1.043 -0.320 1.931 sum 10.411 -14.316 6.459 18.843 Atomic orbital electron populations 1.22031 0.96491 1.00947 1.02130 1.22499 0.95606 0.95078 1.04068 1.20816 0.95749 0.93547 0.82705 1.22483 0.93067 1.02985 1.02097 1.22124 1.01384 0.99264 0.97432 1.48303 1.45837 1.30456 1.05921 1.18963 0.87750 0.82741 0.96752 1.21772 0.93490 0.93410 1.47859 0.91772 1.25689 1.02905 0.94815 0.95225 1.70034 1.34616 1.01077 1.51103 0.85684 0.79807 0.77838 0.78820 1.18610 1.20615 1.20726 1.16708 0.79378 0.82195 0.84448 1.90776 1.62102 1.60366 1.31306 1.22395 1.10395 0.99851 0.85460 1.85506 1.52213 1.32994 1.33040 1.27840 0.91309 0.89516 0.91223 1.20731 1.01223 0.92917 0.96871 1.70352 1.22578 1.21780 1.09841 1.22234 0.94556 0.90943 0.97985 1.20341 1.03377 1.02750 0.87075 0.92118 0.94619 0.92234 0.90545 0.88004 0.92501 0.88174 0.93321 0.92266 0.88594 0.93372 0.93833 0.98830 0.92687 0.86374 0.86610 0.86872 0.90079 0.90604 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.26 9.29 71.98 0.67 -4.59 16 2 C -0.14 -3.89 4.11 30.59 0.13 -3.76 16 3 C 0.16 5.09 0.74 3.60 0.00 5.09 16 4 C -0.15 -3.96 7.55 71.98 0.54 -3.41 16 5 C -0.15 -4.61 6.46 71.98 0.47 -4.14 16 6 N -0.58 -25.21 2.12 -783.66 -1.66 -26.87 16 7 C 0.26 13.71 4.50 85.63 0.39 14.10 16 8 C -0.53 -29.58 8.82 25.60 0.23 -29.35 16 9 H 0.06 3.58 4.99 -2.91 -0.01 3.56 16 10 C 0.01 0.71 5.46 84.65 0.46 1.17 16 11 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 12 Si 0.95 45.07 29.54 68.60 2.03 47.10 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 14 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 16 C 0.59 26.58 6.98 86.46 0.60 27.18 16 17 O -0.56 -30.00 14.42 -4.34 -0.06 -30.06 16 18 C -0.13 -4.61 4.79 24.05 0.12 -4.50 16 19 O -0.15 -4.12 2.81 -6.98 -0.02 -4.14 16 20 C 0.21 4.74 8.32 88.29 0.73 5.47 16 21 C -0.06 -0.59 10.51 71.24 0.75 0.16 16 22 N -0.51 -15.07 11.26 -291.05 -3.28 -18.35 16 23 C 0.07 2.28 7.16 41.83 0.30 2.58 16 24 C -0.08 -2.50 9.94 71.24 0.71 -1.79 16 25 H 0.06 1.99 5.93 -2.38 -0.01 1.97 16 26 H 0.03 1.48 4.92 -2.39 -0.01 1.47 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.39 3.84 -68.17 -0.26 2.13 16 29 H 0.10 2.11 7.93 -2.39 -0.02 2.09 16 30 H 0.06 1.48 7.89 -2.39 -0.02 1.46 16 31 H 0.10 1.88 7.62 -2.39 -0.02 1.86 16 32 H 0.05 1.48 4.64 -2.39 -0.01 1.47 16 33 H 0.06 2.21 5.51 -2.39 -0.01 2.20 16 34 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.05 1.64 6.96 -2.38 -0.02 1.62 16 36 H 0.04 2.30 5.46 -2.38 -0.01 2.29 16 37 H -0.01 -0.40 7.56 -2.39 -0.02 -0.41 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 43 H 0.08 2.77 6.36 -2.39 -0.02 2.76 16 44 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -73.88 334.29 4.14 -69.74 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.77 Total: 13.79 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.09 Total: 4.21 kcal Atomic # 7 Polarization: -95.98 SS G_CDS: -4.66 Total: -100.64 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.08 Total: -34.20 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.88 4.14 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189917213.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.116 kcal (2) G-P(sol) polarization free energy of solvation -73.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds