Wall clock time and date at job start Tue Mar 31 2020 06:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46954 * 2 1 4 4 N 1.30838 * 125.89889 * 270.02559 * 3 2 1 5 5 N 1.40080 * 108.20344 * 179.97438 * 4 3 2 6 6 C 1.46501 * 126.03696 * 180.02562 * 5 4 3 7 7 C 1.34951 * 107.92649 * 359.75740 * 5 4 3 8 8 C 1.50700 * 126.12519 * 180.23853 * 7 5 4 9 9 C 1.53001 * 109.46943 * 90.18049 * 8 7 5 10 10 C 1.35306 * 107.74429 * 0.39166 * 7 5 4 11 11 C 1.50706 * 126.04096 * 179.87280 * 10 7 5 12 12 C 1.50702 * 109.46975 * 269.71660 * 11 10 7 13 13 O 1.20827 * 119.99777 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99854 * 180.02562 * 12 11 10 15 15 C 1.45202 * 116.99803 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46710 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46752 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99545 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99685 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00206 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47370 * 89.99851 * 21 19 17 23 23 H 1.48497 * 109.47096 * 210.00102 * 21 19 17 24 24 H 1.48507 * 109.47364 * 329.99871 * 21 19 17 25 25 H 1.08997 * 109.46720 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46733 * 299.99215 * 1 2 3 27 27 H 1.08994 * 109.47640 * 59.99645 * 1 2 3 28 28 H 1.08996 * 109.46807 * 240.00383 * 2 1 3 29 29 H 1.08994 * 109.47640 * 120.00355 * 2 1 3 30 30 H 1.09009 * 109.46978 * 90.02635 * 6 5 4 31 31 H 1.09000 * 109.47667 * 210.02168 * 6 5 4 32 32 H 1.09004 * 109.47353 * 330.02766 * 6 5 4 33 33 H 1.09000 * 109.47109 * 210.18002 * 8 7 5 34 34 H 1.08998 * 109.47444 * 330.17684 * 8 7 5 35 35 H 1.09000 * 109.47368 * 299.99390 * 9 8 7 36 36 H 1.09000 * 109.46845 * 60.00147 * 9 8 7 37 37 H 1.09001 * 109.46670 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.46790 * 29.71060 * 11 10 7 39 39 H 1.08997 * 109.47305 * 149.71501 * 11 10 7 40 40 H 1.08992 * 109.46908 * 300.00079 * 15 14 12 41 41 H 1.09001 * 109.46731 * 60.00122 * 15 14 12 42 42 H 1.08996 * 109.47264 * 299.99676 * 16 15 14 43 43 H 1.08993 * 109.47156 * 60.00516 * 16 15 14 44 44 H 0.96999 * 120.00095 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2876 2.1443 -1.0599 5 7 2.7320 3.4027 -0.6341 6 6 3.1246 4.5167 -1.5007 7 6 2.7289 3.4095 0.7154 8 6 3.1289 4.5630 1.5989 9 6 1.9018 5.4272 1.8961 10 6 2.3056 2.1941 1.1330 11 6 2.1499 1.7535 2.5658 12 6 3.4378 1.1338 3.0436 13 8 4.3848 1.0573 2.2971 14 8 3.5325 0.6659 4.2981 15 6 4.8029 0.0816 4.6896 16 6 4.7204 -0.3916 6.1422 17 6 6.0387 -0.9986 6.5483 18 1 6.8538 -1.0420 5.8411 19 6 6.2041 -1.4985 7.8226 20 7 5.2113 -1.4460 8.6835 21 14 7.8383 -2.2501 8.3262 22 1 8.7147 -1.1945 8.8943 23 1 7.6052 -3.3027 9.3475 24 1 8.4943 -2.8510 7.1370 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2530 5.1353 -1.7146 31 1 3.8825 5.1181 -0.9986 32 1 3.5305 4.1257 -2.4338 33 1 3.5384 4.1798 2.5336 34 1 3.8830 5.1648 1.0917 35 1 1.4924 5.8105 0.9614 36 1 1.1478 4.8253 2.4034 37 1 2.1911 6.2612 2.5355 38 1 1.9094 2.6162 3.1870 39 1 1.3462 1.0204 2.6352 40 1 5.0273 -0.7665 4.0429 41 1 5.5908 0.8289 4.5954 42 1 4.4962 0.4569 6.7886 43 1 3.9325 -1.1387 6.2368 44 1 5.3278 -1.7973 9.5801 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192100144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:54 Heat of formation + Delta-G solvation = -42.074171 kcal Electronic energy + Delta-G solvation = -23669.188325 eV Core-core repulsion = 20201.470502 eV Total energy + Delta-G solvation = -3467.717823 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59617 -39.66089 -36.05003 -35.26674 -34.11870 -33.31173 -32.14066 -31.03044 -30.10423 -28.09304 -26.16354 -24.86644 -23.83105 -23.45091 -21.33635 -20.53502 -19.44711 -19.29393 -17.28831 -16.70418 -16.16405 -16.00553 -15.65876 -15.38873 -14.89119 -14.64883 -14.46291 -14.19055 -13.76814 -13.45817 -13.30414 -13.21869 -12.73671 -12.60642 -12.47286 -12.32793 -12.14482 -12.01372 -11.74261 -11.48043 -11.27511 -11.17381 -11.14314 -11.00551 -10.70318 -10.65506 -10.42888 -10.09982 -9.57975 -9.57642 -9.27292 -9.12398 -8.42466 -8.34945 -6.08629 -4.12698 1.77171 2.37978 2.57190 2.72771 3.29557 3.35216 3.38641 3.55546 4.30152 4.34373 4.41620 4.66440 4.80378 4.86643 4.97550 4.99299 5.04094 5.11392 5.15756 5.27381 5.27934 5.30160 5.46695 5.47887 5.53174 5.60452 5.66207 5.74258 5.83349 5.90087 6.04309 6.10905 6.14860 6.17371 6.18766 6.62815 6.69096 6.93714 7.11888 7.59931 7.65960 7.69715 7.89977 8.24640 8.39190 8.93000 9.51579 11.02893 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.003077 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.682315 B = 9097.870737 C = 9610.819759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.099 3.901 4 N -0.299 5.299 5 N -0.374 5.374 6 C 0.104 3.896 7 C 0.107 3.893 8 C -0.066 4.066 9 C -0.146 4.146 10 C -0.220 4.220 11 C -0.035 4.035 12 C 0.451 3.549 13 O -0.510 6.510 14 O -0.360 6.360 15 C 0.076 3.924 16 C 0.025 3.975 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 12.850 -17.506 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.067 4.067 4 N -0.120 5.120 5 N -0.155 5.155 6 C -0.038 4.038 7 C -0.021 4.021 8 C -0.105 4.105 9 C -0.203 4.203 10 C -0.232 4.232 11 C -0.073 4.073 12 C 0.293 3.707 13 O -0.399 6.399 14 O -0.277 6.277 15 C 0.003 3.997 16 C -0.012 4.012 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.894 12.930 -18.916 24.958 hybrid contribution 1.182 -0.384 1.070 1.640 sum -8.712 12.546 -17.846 23.490 Atomic orbital electron populations 1.21705 0.94141 1.02052 1.02236 1.19979 0.96049 0.88912 1.03689 1.22080 0.97987 0.96588 0.90072 1.77281 1.21764 0.90547 1.22360 1.48177 1.52071 1.11294 1.03977 1.21790 1.00842 0.86233 0.94922 1.20732 0.99764 0.97070 0.84501 1.20267 0.98642 0.92975 0.98622 1.21732 0.97322 0.99528 1.01755 1.18995 1.15631 0.94061 0.94473 1.19528 0.94030 1.01928 0.91855 1.23653 0.90258 0.76084 0.80687 1.90625 1.39869 1.53436 1.55974 1.86525 1.41416 1.69877 1.29855 1.23580 0.80292 0.96084 0.99709 1.19160 0.98099 0.97122 0.86854 1.20997 0.97731 1.39872 0.97821 0.92321 1.24974 0.96986 0.95794 0.96381 1.69969 1.31268 1.45976 1.05657 0.86486 0.83520 0.78969 0.78424 1.20507 1.21052 1.19729 0.91854 0.92276 0.92621 0.90351 0.89904 0.90979 0.89675 0.89364 0.89060 0.90573 0.92832 0.91777 0.91526 0.87631 0.87284 0.92488 0.92574 0.95402 0.95349 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.16 0.37 -0.97 16 2 C -0.05 -0.55 6.17 -27.88 -0.17 -0.72 16 3 C 0.10 1.40 6.47 -82.40 -0.53 0.86 16 4 N -0.30 -4.36 12.58 33.67 0.42 -3.93 16 5 N -0.37 -4.63 4.01 -63.88 -0.26 -4.88 16 6 C 0.10 0.79 11.27 59.85 0.67 1.47 16 7 C 0.11 1.33 6.18 -82.27 -0.51 0.82 16 8 C -0.07 -0.62 5.77 -27.88 -0.16 -0.78 16 9 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 10 C -0.22 -3.02 4.59 -105.05 -0.48 -3.51 16 11 C -0.03 -0.45 5.58 -29.03 -0.16 -0.61 16 12 C 0.45 7.99 7.95 36.01 0.29 8.28 16 13 O -0.51 -10.55 15.78 -18.75 -0.30 -10.85 16 14 O -0.36 -7.24 10.22 -39.26 -0.40 -7.64 16 15 C 0.08 1.72 5.41 37.16 0.20 1.92 16 16 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 17 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 21 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.00 7.92 -51.93 -0.41 0.59 16 30 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.08 0.49 7.06 -51.93 -0.37 0.12 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.95 7.77 -51.93 -0.40 0.55 16 34 H 0.08 0.60 7.08 -51.93 -0.37 0.24 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 1.13 7.76 -51.93 -0.40 0.73 16 39 H 0.11 1.21 7.92 -51.93 -0.41 0.80 16 40 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 41 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -34.57 373.23 -7.27 -41.84 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -7.40 Total: -3.91 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.68 Total: -7.04 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.90 Total: -34.51 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.70 Total: -18.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.57 -7.27 -41.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192100144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.234 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds