Wall clock time and date at job start Tue Mar 31 2020 06:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46954 * 2 1 4 4 N 1.30838 * 125.89889 * 270.02559 * 3 2 1 5 5 N 1.40080 * 108.20344 * 179.97438 * 4 3 2 6 6 C 1.46501 * 126.03696 * 180.02562 * 5 4 3 7 7 C 1.34951 * 107.92649 * 359.75740 * 5 4 3 8 8 C 1.50700 * 126.12519 * 180.23853 * 7 5 4 9 9 C 1.53001 * 109.46943 * 90.18049 * 8 7 5 10 10 C 1.35306 * 107.74429 * 0.39166 * 7 5 4 11 11 C 1.50706 * 126.04096 * 179.87280 * 10 7 5 12 12 C 1.50702 * 109.46975 * 269.71660 * 11 10 7 13 13 O 1.20827 * 119.99777 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99854 * 180.02562 * 12 11 10 15 15 C 1.45202 * 116.99803 * 179.97438 * 14 12 11 16 16 C 1.53003 * 109.46710 * 179.97438 * 15 14 12 17 17 C 1.50707 * 109.46752 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99545 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99685 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00206 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47370 * 89.99851 * 21 19 17 23 23 H 1.48497 * 109.47096 * 210.00102 * 21 19 17 24 24 H 1.48507 * 109.47364 * 329.99871 * 21 19 17 25 25 H 1.08997 * 109.46720 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46733 * 299.99215 * 1 2 3 27 27 H 1.08994 * 109.47640 * 59.99645 * 1 2 3 28 28 H 1.08996 * 109.46807 * 240.00383 * 2 1 3 29 29 H 1.08994 * 109.47640 * 120.00355 * 2 1 3 30 30 H 1.09009 * 109.46978 * 90.02635 * 6 5 4 31 31 H 1.09000 * 109.47667 * 210.02168 * 6 5 4 32 32 H 1.09004 * 109.47353 * 330.02766 * 6 5 4 33 33 H 1.09000 * 109.47109 * 210.18002 * 8 7 5 34 34 H 1.08998 * 109.47444 * 330.17684 * 8 7 5 35 35 H 1.09000 * 109.47368 * 299.99390 * 9 8 7 36 36 H 1.09000 * 109.46845 * 60.00147 * 9 8 7 37 37 H 1.09001 * 109.46670 * 179.97438 * 9 8 7 38 38 H 1.08994 * 109.46790 * 29.71060 * 11 10 7 39 39 H 1.08997 * 109.47305 * 149.71501 * 11 10 7 40 40 H 1.08992 * 109.46908 * 300.00079 * 15 14 12 41 41 H 1.09001 * 109.46731 * 60.00122 * 15 14 12 42 42 H 1.08996 * 109.47264 * 299.99676 * 16 15 14 43 43 H 1.08993 * 109.47156 * 60.00516 * 16 15 14 44 44 H 0.96999 * 120.00095 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2876 2.1443 -1.0599 5 7 2.7320 3.4027 -0.6341 6 6 3.1246 4.5167 -1.5007 7 6 2.7289 3.4095 0.7154 8 6 3.1289 4.5630 1.5989 9 6 1.9018 5.4272 1.8961 10 6 2.3056 2.1941 1.1330 11 6 2.1499 1.7535 2.5658 12 6 3.4378 1.1338 3.0436 13 8 4.3848 1.0573 2.2971 14 8 3.5325 0.6659 4.2981 15 6 4.8029 0.0816 4.6896 16 6 4.7204 -0.3916 6.1422 17 6 6.0387 -0.9986 6.5483 18 1 6.8538 -1.0420 5.8411 19 6 6.2041 -1.4985 7.8226 20 7 5.2113 -1.4460 8.6835 21 14 7.8383 -2.2501 8.3262 22 1 8.7147 -1.1945 8.8943 23 1 7.6052 -3.3027 9.3475 24 1 8.4943 -2.8510 7.1370 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2530 5.1353 -1.7146 31 1 3.8825 5.1181 -0.9986 32 1 3.5305 4.1257 -2.4338 33 1 3.5384 4.1798 2.5336 34 1 3.8830 5.1648 1.0917 35 1 1.4924 5.8105 0.9614 36 1 1.1478 4.8253 2.4034 37 1 2.1911 6.2612 2.5355 38 1 1.9094 2.6162 3.1870 39 1 1.3462 1.0204 2.6352 40 1 5.0273 -0.7665 4.0429 41 1 5.5908 0.8289 4.5954 42 1 4.4962 0.4569 6.7886 43 1 3.9325 -1.1387 6.2368 44 1 5.3278 -1.7973 9.5801 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192100144.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:53 Heat of formation + Delta-G solvation = -61.701201 kcal Electronic energy + Delta-G solvation = -23670.039417 eV Core-core repulsion = 20201.470502 eV Total energy + Delta-G solvation = -3468.568915 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.56089 -41.17634 -37.65700 -36.12448 -35.42746 -34.99082 -33.01821 -32.41411 -31.62831 -29.01901 -27.33182 -26.56290 -24.59960 -24.35226 -23.11786 -22.09950 -20.43929 -20.22180 -18.95518 -18.10549 -17.73039 -17.49415 -16.94905 -16.55381 -16.31566 -15.82167 -15.45983 -15.08376 -14.95916 -14.55730 -14.37814 -14.29991 -14.01610 -13.86856 -13.47838 -13.43052 -13.20164 -12.98333 -12.95927 -12.79167 -12.56765 -12.54973 -12.47184 -12.21271 -12.01911 -11.97168 -11.82619 -11.49684 -11.43511 -11.37673 -11.27979 -10.60035 -10.05006 -9.32601 -8.25988 -6.39041 0.83235 1.29794 1.40174 1.43161 1.45045 1.54920 1.60686 2.14245 2.43177 3.08229 3.46079 3.53793 3.86407 3.94507 4.05948 4.14798 4.20301 4.24396 4.27045 4.30746 4.35774 4.40637 4.45663 4.57808 4.59470 4.66786 4.72330 4.75133 4.79746 4.92406 5.03783 5.05454 5.14593 5.29907 5.30991 5.33733 5.34400 5.49452 5.59134 5.69519 5.78730 6.08480 6.11025 6.73047 6.73789 6.87369 7.30603 8.86533 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.003077 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.682315 B = 9097.870737 C = 9610.819759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 C 0.085 3.915 4 N -0.330 5.330 5 N -0.376 5.376 6 C 0.092 3.908 7 C 0.109 3.891 8 C -0.066 4.066 9 C -0.140 4.140 10 C -0.249 4.249 11 C -0.023 4.023 12 C 0.453 3.547 13 O -0.541 6.541 14 O -0.365 6.365 15 C 0.092 3.908 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.972 3.028 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.265 1.265 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.008 0.992 43 H 0.007 0.993 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 13.919 -17.855 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 C -0.080 4.080 4 N -0.152 5.152 5 N -0.157 5.157 6 C -0.047 4.047 7 C -0.020 4.020 8 C -0.105 4.105 9 C -0.197 4.197 10 C -0.260 4.260 11 C -0.061 4.061 12 C 0.297 3.703 13 O -0.431 6.431 14 O -0.282 6.282 15 C 0.018 3.982 16 C -0.005 4.005 17 C -0.589 4.589 18 H 0.080 0.920 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.795 3.205 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.189 1.189 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.785 14.016 -19.296 25.778 hybrid contribution 1.116 -0.634 1.097 1.688 sum -8.670 13.381 -18.199 24.195 Atomic orbital electron populations 1.21653 0.92266 1.03086 1.02302 1.20043 0.97664 0.87959 1.03138 1.22437 0.97949 0.97370 0.90279 1.77208 1.23054 0.91854 1.23108 1.48562 1.51182 1.11420 1.04547 1.22166 1.02427 0.85438 0.94715 1.21225 0.98299 0.97556 0.84960 1.20381 1.00039 0.92446 0.97604 1.21703 0.96154 0.99469 1.02407 1.19172 1.17447 0.94889 0.94486 1.19635 0.91518 1.03000 0.91968 1.24640 0.91520 0.74912 0.79196 1.90610 1.41425 1.54693 1.56375 1.86526 1.39851 1.70178 1.31634 1.23082 0.81578 0.96082 0.97416 1.18967 0.96936 0.95705 0.88915 1.21380 0.98555 1.40517 0.98490 0.91977 1.25931 1.00982 0.95987 0.96238 1.70084 1.33527 1.46643 1.06182 0.85349 0.78617 0.78262 0.78231 1.19474 1.20293 1.18932 0.90321 0.91758 0.92930 0.90676 0.90611 0.88900 0.87554 0.89183 0.90201 0.88915 0.92122 0.92123 0.89972 0.84996 0.85235 0.92785 0.92581 0.97323 0.97436 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 9.89 71.98 0.71 -1.69 16 2 C -0.05 -1.14 6.17 29.85 0.18 -0.96 16 3 C 0.09 2.38 6.47 43.10 0.28 2.66 16 4 N -0.33 -9.54 12.58 -47.38 -0.60 -10.14 16 5 N -0.38 -8.85 4.01 -356.02 -1.43 -10.28 16 6 C 0.09 1.23 11.27 127.77 1.44 2.67 16 7 C 0.11 2.55 6.18 41.40 0.26 2.81 16 8 C -0.07 -1.11 5.77 29.85 0.17 -0.93 16 9 C -0.14 -1.67 9.89 71.98 0.71 -0.96 16 10 C -0.25 -6.61 4.59 -20.14 -0.09 -6.71 16 11 C -0.02 -0.57 5.58 29.10 0.16 -0.41 16 12 C 0.45 15.92 7.95 71.24 0.57 16.49 16 13 O -0.54 -22.46 15.78 21.96 0.35 -22.12 16 14 O -0.37 -14.72 10.22 -51.44 -0.53 -15.25 16 15 C 0.09 4.22 5.41 71.98 0.39 4.61 16 16 C 0.03 1.73 5.35 29.85 0.16 1.89 16 17 C -0.55 -31.62 9.11 25.60 0.23 -31.38 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C 0.01 0.44 5.46 84.66 0.46 0.90 16 20 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 21 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.08 1.84 7.92 -2.39 -0.02 1.82 16 30 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.11 0.95 7.06 -2.39 -0.02 0.93 16 32 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.55 7.77 -2.39 -0.02 1.53 16 34 H 0.09 1.23 7.08 -2.39 -0.02 1.22 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.13 2.56 7.76 -2.39 -0.02 2.54 16 39 H 0.13 2.67 7.92 -2.39 -0.02 2.66 16 40 H 0.05 2.49 8.13 -2.39 -0.02 2.47 16 41 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -74.90 373.23 6.71 -68.19 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.97 Total: 9.86 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 5.64 Total: -11.00 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.74 Total: -75.51 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.18 Total: -37.36 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.90 6.71 -68.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192100144.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.484 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds