Wall clock time and date at job start Tue Mar 31 2020 06:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 C 1.50700 * 109.47501 * 180.02562 * 3 2 1 5 5 C 1.39641 * 126.06246 * 124.97222 * 4 3 2 6 6 C 1.38491 * 105.35392 * 179.97438 * 5 4 3 7 7 C 1.47006 * 126.89014 * 179.97438 * 6 5 4 8 8 O 1.21545 * 120.00332 * 0.02562 * 7 6 5 9 9 O 1.34815 * 119.99587 * 180.02562 * 7 6 5 10 10 C 1.45202 * 117.00034 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47434 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47397 * 300.00215 * 11 10 9 13 13 C 1.53007 * 109.46570 * 60.00206 * 11 10 9 14 14 C 1.52995 * 109.47214 * 179.97438 * 11 10 9 15 15 C 1.50696 * 109.47323 * 180.02562 * 14 11 10 16 16 H 1.07998 * 119.99911 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00240 * 180.02562 * 15 14 11 18 18 N 1.31508 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99976 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47160 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47328 * 120.00161 * 19 17 15 22 22 H 1.48505 * 109.47139 * 239.99787 * 19 17 15 23 23 N 1.36653 * 106.21347 * 0.02562 * 6 5 4 24 24 H 0.97000 * 125.19638 * 180.02562 * 23 6 5 25 25 N 1.28445 * 109.60910 * 359.97438 * 23 6 5 26 26 H 1.08999 * 109.46464 * 299.99993 * 1 2 3 27 27 H 1.08996 * 109.46860 * 60.00022 * 1 2 3 28 28 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46815 * 240.00307 * 2 1 3 30 30 H 1.09001 * 109.47530 * 120.00546 * 2 1 3 31 31 H 1.09003 * 109.47088 * 59.99853 * 3 2 1 32 32 H 1.09004 * 109.47547 * 300.00253 * 3 2 1 33 33 H 1.07997 * 127.32021 * 359.97438 * 5 4 3 34 34 H 1.08999 * 109.47116 * 300.00597 * 10 9 7 35 35 H 1.09003 * 109.47131 * 59.99727 * 10 9 7 36 36 H 1.09009 * 109.47054 * 59.99504 * 12 11 10 37 37 H 1.08994 * 109.47145 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.46923 * 300.00310 * 12 11 10 39 39 H 1.08994 * 109.47342 * 60.00236 * 13 11 10 40 40 H 1.09007 * 109.46522 * 180.02562 * 13 11 10 41 41 H 1.08999 * 109.47292 * 299.99508 * 13 11 10 42 42 H 1.08999 * 109.47255 * 300.00647 * 14 11 10 43 43 H 1.08998 * 109.47313 * 60.00397 * 14 11 10 44 44 H 0.97001 * 120.00083 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3687 2.0897 -0.9259 6 6 5.6643 1.8095 -0.5248 7 6 6.9052 2.2609 -1.1709 8 8 6.8539 2.9568 -2.1661 9 8 8.1001 1.9029 -0.6596 10 6 9.2835 2.3854 -1.3490 11 6 10.5351 1.8813 -0.6278 12 6 10.5373 2.3988 0.8121 13 6 10.5377 0.3513 -0.6199 14 6 11.7819 2.3892 -1.3546 15 6 13.0147 1.8922 -0.6446 16 1 12.9186 1.2761 0.2372 17 6 14.2654 2.2249 -1.1201 18 7 14.3825 2.9764 -2.1930 19 14 15.7935 1.6083 -0.2403 20 1 15.3932 0.7884 0.9314 21 1 16.6009 0.7803 -1.1719 22 1 16.6014 2.7665 0.2193 23 7 5.5577 1.0282 0.5913 24 1 6.3043 0.6736 1.0989 25 7 4.3178 0.8360 0.8661 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9564 -0.8900 33 1 4.0595 2.6826 -1.7739 34 1 9.2817 2.0171 -2.3749 35 1 9.2818 3.4754 -1.3543 36 1 9.6489 2.0366 1.3297 37 1 11.4287 2.0393 1.3260 38 1 10.5353 3.4888 0.8064 39 1 10.5362 -0.0173 -1.6456 40 1 11.4292 -0.0078 -0.1056 41 1 9.6495 -0.0109 -0.1023 42 1 11.7801 2.0202 -2.3803 43 1 11.7803 3.4792 -1.3607 44 1 15.2624 3.2102 -2.5277 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195096928.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:19 Heat of formation + Delta-G solvation = -66.625586 kcal Electronic energy + Delta-G solvation = -23161.367790 eV Core-core repulsion = 19692.585338 eV Total energy + Delta-G solvation = -3468.782452 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.67743 -41.40358 -38.78891 -37.00965 -36.23091 -34.43528 -32.62829 -32.19503 -29.34704 -28.18725 -27.99190 -27.83252 -25.68042 -24.47708 -22.81115 -22.06991 -21.03171 -20.15550 -19.74931 -18.41994 -17.94594 -17.72991 -16.93159 -16.52897 -16.47153 -15.66813 -15.40019 -15.24361 -14.98994 -14.75782 -14.67705 -14.10297 -14.08456 -13.90373 -13.87850 -13.07996 -13.02129 -12.74244 -12.72326 -12.58131 -12.35468 -12.29828 -12.13606 -12.02019 -11.93719 -11.91912 -11.74852 -11.42770 -11.37382 -11.08604 -10.91992 -10.54743 -10.36267 -10.18584 -8.17254 -6.24772 -0.13257 1.29999 1.39392 1.40822 1.42581 1.54009 1.77164 1.82943 2.42647 3.17624 3.38021 3.55425 3.83934 3.86496 3.89923 4.17382 4.18560 4.27232 4.37955 4.48199 4.51067 4.55780 4.68974 4.79460 4.90575 4.94757 4.97630 5.03885 5.07764 5.10072 5.22466 5.23621 5.39187 5.40901 5.43613 5.44371 5.47928 5.50813 5.54662 5.72195 5.85970 5.92220 6.25770 6.44834 6.88169 6.89387 7.42895 8.95424 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.044089 B = 0.002481 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.932291 B =11284.766288 C =11627.404421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.033 4.033 4 C 0.024 3.976 5 C -0.144 4.144 6 C -0.033 4.033 7 C 0.537 3.463 8 O -0.521 6.521 9 O -0.343 6.343 10 C 0.090 3.910 11 C -0.054 4.054 12 C -0.121 4.121 13 C -0.121 4.121 14 C 0.039 3.961 15 C -0.514 4.514 16 H 0.072 0.928 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.960 3.040 20 H -0.258 1.258 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.354 5.354 24 H 0.461 0.539 25 N -0.265 5.265 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.179 0.821 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.056 0.944 41 H 0.067 0.933 42 H -0.009 1.009 43 H -0.009 1.009 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.195 -5.235 6.559 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.072 4.072 4 C -0.132 4.132 5 C -0.173 4.173 6 C -0.159 4.159 7 C 0.381 3.619 8 O -0.409 6.409 9 O -0.259 6.259 10 C 0.017 3.983 11 C -0.054 4.054 12 C -0.178 4.178 13 C -0.178 4.178 14 C 0.002 3.998 15 C -0.552 4.552 16 H 0.090 0.910 17 C -0.202 4.202 18 N -0.577 5.577 19 Si 0.785 3.215 20 H -0.182 1.182 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.073 5.073 24 H 0.309 0.691 25 N -0.101 5.101 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.197 0.803 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -25.040 -5.597 7.080 26.617 hybrid contribution 1.993 0.506 -0.756 2.191 sum -23.047 -5.091 6.324 24.435 Atomic orbital electron populations 1.21758 0.94330 1.02101 1.02524 1.21449 0.96679 0.95548 1.01880 1.20153 0.83686 0.98539 1.04776 1.22505 0.98328 0.99115 0.93273 1.22400 0.88754 1.03513 1.02607 1.20553 0.92937 1.06625 0.95804 1.19998 0.83335 0.77051 0.81543 1.90890 1.87891 1.36545 1.25607 1.86498 1.14405 1.69657 1.55331 1.23260 0.80783 0.98738 0.95513 1.20639 0.91061 0.97158 0.96563 1.21667 1.01697 0.99810 0.94659 1.21669 1.01693 0.93453 1.01016 1.18992 0.91787 0.94633 0.94390 1.21563 0.90913 1.30829 1.11876 0.90987 1.25937 1.02709 0.95628 0.95887 1.70110 1.24253 1.38765 1.24608 0.85470 0.79162 0.78056 0.78803 1.18170 1.20972 1.20980 1.43752 1.06896 1.36290 1.20353 0.69081 1.73126 0.89750 1.22071 1.25104 0.92079 0.91849 0.92573 0.92634 0.92420 0.89197 0.88013 0.80324 0.91858 0.91853 0.91418 0.92497 0.94183 0.94193 0.92496 0.91429 0.99028 0.99022 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 71.98 0.71 -0.59 16 2 C -0.12 -1.41 5.90 30.59 0.18 -1.23 16 3 C -0.03 -0.39 5.79 29.85 0.17 -0.22 16 4 C 0.02 0.45 6.49 43.04 0.28 0.73 16 5 C -0.14 -2.98 10.77 22.67 0.24 -2.73 16 6 C -0.03 -0.77 7.21 40.75 0.29 -0.48 16 7 C 0.54 15.79 7.95 70.12 0.56 16.35 16 8 O -0.52 -18.27 16.71 19.69 0.33 -17.94 16 9 O -0.34 -10.21 8.89 -57.27 -0.51 -10.72 16 10 C 0.09 3.19 4.33 71.98 0.31 3.50 16 11 C -0.05 -2.08 0.61 -52.18 -0.03 -2.11 16 12 C -0.12 -4.23 8.08 71.98 0.58 -3.65 16 13 C -0.12 -4.23 8.08 71.98 0.58 -3.65 16 14 C 0.04 1.96 4.04 29.84 0.12 2.08 16 15 C -0.51 -27.33 7.65 25.60 0.20 -27.13 16 16 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -56.12 13.29 21.45 0.28 -55.84 16 19 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 20 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 N -0.35 -7.13 6.94 -48.03 -0.33 -7.46 16 24 H 0.46 7.25 8.96 -220.00 -1.97 5.28 16 25 N -0.26 -5.43 12.11 -47.50 -0.58 -6.00 16 26 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.86 8.12 -2.38 -0.02 0.84 16 33 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 1.94 7.68 -2.38 -0.02 1.93 16 37 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16 38 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 2.10 6.62 -2.38 -0.02 2.09 16 41 H 0.07 1.94 7.68 -2.39 -0.02 1.92 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -65.57 366.49 4.90 -60.67 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -0.98 Total: 10.90 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.66 Total: -18.93 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -0.62 Total: -69.30 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.18 Total: -28.66 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.57 4.90 -60.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195096928.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.961 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds