Wall clock time and date at job start Tue Mar 31 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47113 * 2 1 4 4 N 1.32608 * 120.41636 * 269.98156 * 3 2 1 5 5 C 1.31717 * 121.02779 * 180.02562 * 4 3 2 6 6 N 1.31799 * 121.88288 * 0.02562 * 5 4 3 7 7 C 1.32906 * 120.70931 * 359.97438 * 6 5 4 8 8 N 1.38676 * 120.54146 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.53038 * 109.45666 * 275.02780 * 9 8 7 11 11 C 1.53194 * 109.30741 * 178.60179 * 10 9 8 12 12 N 1.46923 * 108.77042 * 54.65262 * 11 10 9 13 13 C 1.36942 * 120.63251 * 126.35776 * 12 11 10 14 14 H 1.07999 * 119.99540 * 331.87022 * 13 12 11 15 15 C 1.38807 * 120.00297 * 151.86448 * 13 12 11 16 16 N 1.31624 * 119.99679 * 343.07335 * 15 13 12 17 17 Si 1.86800 * 120.00256 * 163.06943 * 15 13 12 18 18 H 1.48496 * 109.46759 * 90.00193 * 17 15 13 19 19 H 1.48501 * 109.46960 * 210.00100 * 17 15 13 20 20 H 1.48496 * 109.46747 * 329.99818 * 17 15 13 21 21 C 1.46922 * 118.73741 * 306.38907 * 12 11 10 22 22 C 1.53043 * 109.45807 * 154.97131 * 9 8 7 23 23 C 1.38233 * 120.41487 * 90.00227 * 3 2 1 24 24 F 1.35098 * 120.85045 * 0.25219 * 23 3 2 25 25 H 1.09006 * 109.46719 * 299.99429 * 1 2 3 26 26 H 1.08994 * 109.47562 * 59.99684 * 1 2 3 27 27 H 1.09002 * 109.47401 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46719 * 240.00571 * 2 1 3 29 29 H 1.08994 * 109.47562 * 120.00316 * 2 1 3 30 30 H 1.08004 * 119.05434 * 180.02562 * 5 4 3 31 31 H 0.97005 * 120.00227 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.45663 * 35.00123 * 9 8 7 33 33 H 1.09001 * 109.49839 * 298.55814 * 10 9 8 34 34 H 1.08996 * 109.49868 * 58.66362 * 10 9 8 35 35 H 1.09001 * 109.59904 * 294.86408 * 11 10 9 36 36 H 1.09004 * 109.70507 * 174.50809 * 11 10 9 37 37 H 0.96999 * 120.00141 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.58650 * 293.81323 * 21 12 11 39 39 H 1.09007 * 109.70531 * 173.46085 * 21 12 11 40 40 H 1.08999 * 109.49871 * 301.34040 * 22 9 8 41 41 H 1.08998 * 109.49746 * 61.40603 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2565 2.0537 -1.1436 5 6 2.6960 3.2953 -1.1576 6 7 2.9326 3.9626 -0.0460 7 6 2.7326 3.3978 1.1404 8 7 2.9832 4.1030 2.3078 9 6 3.4721 5.4824 2.2398 10 6 4.9950 5.4767 2.0890 11 6 5.4990 6.9195 1.9832 12 7 5.0106 7.6772 3.1434 13 6 5.8813 8.3721 3.9397 14 1 6.9055 8.0431 4.0353 15 6 5.4476 9.4992 4.6240 16 7 4.3296 10.0956 4.2678 17 14 6.4504 10.1696 6.0503 18 1 7.4324 11.1608 5.5421 19 1 5.5445 10.8261 7.0269 20 1 7.1712 9.0547 6.7156 21 6 3.5702 7.6745 3.4333 22 6 3.0878 6.2233 3.5226 23 6 2.2657 2.0806 1.1921 24 9 2.0540 1.4666 2.3767 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.8673 3.7803 -2.1073 31 1 2.8349 3.6830 3.1696 32 1 3.0241 5.9845 1.3824 33 1 5.4449 4.9969 2.9583 34 1 5.2693 4.9286 1.1877 35 1 5.1219 7.3721 1.0661 36 1 6.5890 6.9283 1.9736 37 1 4.0266 10.8835 4.7456 38 1 3.0358 8.1888 2.6345 39 1 3.3852 8.1801 4.3811 40 1 2.0044 6.2067 3.6417 41 1 3.5553 5.7361 4.3782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218009972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:01 Heat of formation + Delta-G solvation = 16.326289 kcal Electronic energy + Delta-G solvation = -23693.347823 eV Core-core repulsion = 20136.994880 eV Total energy + Delta-G solvation = -3556.352943 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.97339 -40.91950 -38.22667 -35.93777 -34.58153 -32.76824 -31.55246 -30.62998 -29.91617 -28.92060 -25.51678 -24.57335 -23.97634 -22.36256 -22.15193 -21.15026 -19.53650 -18.32446 -17.69839 -17.35562 -16.74177 -16.20859 -15.28574 -15.16083 -14.72889 -14.32981 -14.25554 -14.05099 -13.86990 -13.61554 -13.42389 -13.23798 -12.94781 -12.71564 -12.37261 -11.85842 -11.63240 -11.54692 -11.41893 -11.22263 -11.12481 -10.82740 -10.73441 -10.44699 -10.26990 -10.04153 -9.84789 -9.64153 -9.52884 -9.16737 -8.51916 -8.00504 -6.72529 -5.83351 -3.25520 0.77828 1.17249 2.98310 3.35156 3.42293 3.44564 3.67493 3.83421 3.94679 4.21386 4.46603 4.58297 4.75115 5.00753 5.07337 5.23722 5.29529 5.36387 5.44460 5.51784 5.53644 5.59025 5.75622 5.81673 5.89713 6.00286 6.14460 6.23155 6.40278 6.47158 6.48608 6.58173 6.71868 6.76732 6.93650 7.12196 7.26198 7.50358 7.58679 7.76173 8.16861 8.40844 9.16928 9.80085 10.36727 11.25721 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.003194 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.653437 B = 8764.239029 C = 9031.680055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.075 4.075 3 C 0.180 3.820 4 N -0.550 5.550 5 C 0.335 3.665 6 N -0.555 5.555 7 C 0.429 3.571 8 N -0.694 5.694 9 C 0.158 3.842 10 C -0.138 4.138 11 C 0.149 3.851 12 N -0.593 5.593 13 C -0.253 4.253 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.176 3.824 22 C -0.149 4.149 23 C -0.086 4.086 24 F -0.130 7.130 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.201 0.799 31 H 0.410 0.590 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.022 0.978 36 H 0.056 0.944 37 H 0.254 0.746 38 H 0.022 0.978 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 -17.681 -7.500 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C 0.037 3.963 4 N -0.269 5.269 5 C 0.046 3.954 6 N -0.279 5.279 7 C 0.182 3.818 8 N -0.323 5.323 9 C 0.055 3.945 10 C -0.178 4.178 11 C 0.022 3.978 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.205 1.205 21 C 0.050 3.950 22 C -0.189 4.189 23 C -0.116 4.116 24 F -0.109 7.109 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.217 0.783 31 H 0.246 0.754 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.442 -16.878 -8.204 19.841 hybrid contribution 0.285 -0.171 2.077 2.103 sum -6.156 -17.049 -6.128 19.134 Atomic orbital electron populations 1.21674 0.93489 1.02402 1.02511 1.20489 0.97000 0.89678 1.04183 1.21504 0.91350 0.96871 0.86596 1.68292 1.19276 1.11323 1.28038 1.24743 0.87997 0.86571 0.96090 1.68146 1.24598 1.38366 0.96838 1.18794 0.87903 0.86454 0.88681 1.45234 1.67734 1.15187 1.04120 1.21173 0.94681 0.78563 1.00113 1.22392 0.94683 1.00078 1.00661 1.20861 0.97466 0.88997 0.90475 1.44091 1.03204 1.56444 1.27798 1.19173 0.93819 1.04515 1.20778 0.91675 1.25054 0.97945 0.95745 1.00870 1.70019 1.23736 1.20369 1.40612 0.86302 0.79345 0.78754 0.82411 1.21340 1.21546 1.20502 1.20723 0.83649 0.88859 1.01795 1.22583 0.99663 1.00997 0.95663 1.18564 1.16383 0.93369 0.83286 1.91444 1.93560 1.82304 1.43588 0.92538 0.92003 0.91553 0.89094 0.89775 0.78292 0.75357 0.89388 0.92511 0.92687 0.96044 0.92567 0.93572 0.96017 0.88978 0.92713 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.89 37.16 0.37 -0.77 16 2 C -0.08 -0.68 6.11 -27.88 -0.17 -0.85 16 3 C 0.18 2.17 6.07 -82.26 -0.50 1.67 16 4 N -0.55 -6.83 10.37 -10.84 -0.11 -6.94 16 5 C 0.34 4.10 12.28 -92.22 -1.13 2.96 16 6 N -0.55 -8.06 9.35 -13.75 -0.13 -8.19 16 7 C 0.43 6.24 7.50 -154.64 -1.16 5.08 16 8 N -0.69 -10.10 5.22 -53.66 -0.28 -10.38 16 9 C 0.16 2.65 2.45 -67.89 -0.17 2.48 16 10 C -0.14 -2.44 5.66 -26.61 -0.15 -2.59 16 11 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 12 N -0.59 -14.55 2.99 -172.32 -0.52 -15.07 16 13 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 14 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 15 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 16 N -0.90 -25.78 11.19 55.49 0.62 -25.15 16 17 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.18 4.07 5.30 -3.71 -0.02 4.05 16 22 C -0.15 -2.71 5.55 -26.61 -0.15 -2.85 16 23 C -0.09 -1.13 7.32 -38.98 -0.29 -1.42 16 24 F -0.13 -1.65 16.07 2.25 0.04 -1.61 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.70 7.70 -51.93 -0.40 0.30 16 30 H 0.20 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.41 5.40 8.18 -40.82 -0.33 5.06 16 32 H 0.09 1.60 7.57 -51.93 -0.39 1.21 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -29.53 338.38 -9.98 -39.51 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.05 Total: 2.54 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -3.62 Total: 3.85 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: -0.42 Total: -65.74 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.53 -9.98 -39.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218009972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.833 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds