Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.47113 * 2 1 4 4 N 1.32608 * 120.41636 * 269.98156 * 3 2 1 5 5 C 1.31717 * 121.02779 * 180.02562 * 4 3 2 6 6 N 1.31799 * 121.88288 * 0.02562 * 5 4 3 7 7 C 1.32906 * 120.70931 * 359.97438 * 6 5 4 8 8 N 1.38676 * 120.54146 * 179.97438 * 7 6 5 9 9 C 1.46506 * 120.00195 * 0.02562 * 8 7 6 10 10 C 1.53038 * 109.45666 * 275.02780 * 9 8 7 11 11 C 1.53194 * 109.30741 * 178.60179 * 10 9 8 12 12 N 1.46923 * 108.77042 * 54.65262 * 11 10 9 13 13 C 1.36942 * 120.63251 * 126.35776 * 12 11 10 14 14 H 1.07999 * 119.99540 * 331.87022 * 13 12 11 15 15 C 1.38807 * 120.00297 * 151.86448 * 13 12 11 16 16 N 1.31624 * 119.99679 * 343.07335 * 15 13 12 17 17 Si 1.86800 * 120.00256 * 163.06943 * 15 13 12 18 18 H 1.48496 * 109.46759 * 90.00193 * 17 15 13 19 19 H 1.48501 * 109.46960 * 210.00100 * 17 15 13 20 20 H 1.48496 * 109.46747 * 329.99818 * 17 15 13 21 21 C 1.46922 * 118.73741 * 306.38907 * 12 11 10 22 22 C 1.53043 * 109.45807 * 154.97131 * 9 8 7 23 23 C 1.38233 * 120.41487 * 90.00227 * 3 2 1 24 24 F 1.35098 * 120.85045 * 0.25219 * 23 3 2 25 25 H 1.09006 * 109.46719 * 299.99429 * 1 2 3 26 26 H 1.08994 * 109.47562 * 59.99684 * 1 2 3 27 27 H 1.09002 * 109.47401 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46719 * 240.00571 * 2 1 3 29 29 H 1.08994 * 109.47562 * 120.00316 * 2 1 3 30 30 H 1.08004 * 119.05434 * 180.02562 * 5 4 3 31 31 H 0.97005 * 120.00227 * 180.02562 * 8 7 6 32 32 H 1.08998 * 109.45663 * 35.00123 * 9 8 7 33 33 H 1.09001 * 109.49839 * 298.55814 * 10 9 8 34 34 H 1.08996 * 109.49868 * 58.66362 * 10 9 8 35 35 H 1.09001 * 109.59904 * 294.86408 * 11 10 9 36 36 H 1.09004 * 109.70507 * 174.50809 * 11 10 9 37 37 H 0.96999 * 120.00141 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.58650 * 293.81323 * 21 12 11 39 39 H 1.09007 * 109.70531 * 173.46085 * 21 12 11 40 40 H 1.08999 * 109.49871 * 301.34040 * 22 9 8 41 41 H 1.08998 * 109.49746 * 61.40603 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2565 2.0537 -1.1436 5 6 2.6960 3.2953 -1.1576 6 7 2.9326 3.9626 -0.0460 7 6 2.7326 3.3978 1.1404 8 7 2.9832 4.1030 2.3078 9 6 3.4721 5.4824 2.2398 10 6 4.9950 5.4767 2.0890 11 6 5.4990 6.9195 1.9832 12 7 5.0106 7.6772 3.1434 13 6 5.8813 8.3721 3.9397 14 1 6.9055 8.0431 4.0353 15 6 5.4476 9.4992 4.6240 16 7 4.3296 10.0956 4.2678 17 14 6.4504 10.1696 6.0503 18 1 7.4324 11.1608 5.5421 19 1 5.5445 10.8261 7.0269 20 1 7.1712 9.0547 6.7156 21 6 3.5702 7.6745 3.4333 22 6 3.0878 6.2233 3.5226 23 6 2.2657 2.0806 1.1921 24 9 2.0540 1.4666 2.3767 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.8673 3.7803 -2.1073 31 1 2.8349 3.6830 3.1696 32 1 3.0241 5.9845 1.3824 33 1 5.4449 4.9969 2.9583 34 1 5.2693 4.9286 1.1877 35 1 5.1219 7.3721 1.0661 36 1 6.5890 6.9283 1.9736 37 1 4.0266 10.8835 4.7456 38 1 3.0358 8.1888 2.6345 39 1 3.3852 8.1801 4.3811 40 1 2.0044 6.2067 3.6417 41 1 3.5553 5.7361 4.3782 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218009972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = 0.641360 kcal Electronic energy + Delta-G solvation = -23694.027972 eV Core-core repulsion = 20136.994880 eV Total energy + Delta-G solvation = -3557.033093 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.155 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.95941 -41.92748 -39.70286 -37.28381 -35.63407 -34.35667 -32.82619 -31.91302 -31.51377 -30.29204 -27.04344 -25.77438 -25.02831 -23.87469 -23.66591 -22.26386 -21.10007 -19.51080 -18.87254 -18.47538 -18.35522 -17.20703 -16.91700 -16.30758 -16.19978 -15.58268 -15.39178 -15.26336 -15.10022 -14.83670 -14.76690 -14.63195 -14.37358 -13.97410 -13.61501 -13.24005 -13.02680 -12.74078 -12.61129 -12.58801 -12.49924 -12.38900 -12.11219 -12.00402 -11.92827 -11.81868 -11.38737 -11.33423 -10.67211 -10.55095 -10.19400 -9.13479 -8.71641 -7.89562 -5.34626 -0.18687 0.13934 1.46780 1.48434 1.58030 1.85539 2.50725 2.68887 2.85971 3.06150 3.22426 3.27796 3.62781 3.66296 3.85749 3.90281 4.01577 4.30375 4.34016 4.35141 4.42752 4.50548 4.63153 4.71565 4.79565 4.86342 4.95776 5.00043 5.05270 5.07991 5.12804 5.24265 5.28971 5.38552 5.45239 5.62851 5.66375 5.68770 5.94490 6.37861 6.45605 7.13291 7.16723 7.83151 8.35259 9.17594 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.037846 B = 0.003194 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.653437 B = 8764.239029 C = 9031.680055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C 0.181 3.819 4 N -0.552 5.552 5 C 0.334 3.666 6 N -0.577 5.577 7 C 0.416 3.584 8 N -0.693 5.693 9 C 0.175 3.825 10 C -0.121 4.121 11 C 0.147 3.853 12 N -0.610 5.610 13 C -0.264 4.264 14 H 0.066 0.934 15 C -0.048 4.048 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.271 1.271 21 C 0.182 3.818 22 C -0.133 4.133 23 C -0.093 4.093 24 F -0.128 7.128 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.230 0.770 31 H 0.417 0.583 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.016 0.984 36 H 0.055 0.945 37 H 0.251 0.749 38 H 0.000 1.000 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -19.792 -7.892 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C 0.037 3.963 4 N -0.271 5.271 5 C 0.045 3.955 6 N -0.302 5.302 7 C 0.170 3.830 8 N -0.323 5.323 9 C 0.070 3.930 10 C -0.161 4.161 11 C 0.021 3.979 12 N -0.334 5.334 13 C -0.395 4.395 14 H 0.084 0.916 15 C -0.244 4.244 16 N -0.580 5.580 17 Si 0.795 3.205 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.196 1.196 21 C 0.056 3.944 22 C -0.173 4.173 23 C -0.123 4.123 24 F -0.107 7.107 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.111 0.889 30 H 0.246 0.754 31 H 0.255 0.745 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.504 -19.037 -8.619 21.886 hybrid contribution 0.286 0.427 2.071 2.134 sum -6.217 -18.610 -6.548 20.685 Atomic orbital electron populations 1.21658 0.92586 1.03683 1.01752 1.20629 0.97620 0.87822 1.05234 1.22038 0.90144 0.98055 0.86044 1.68405 1.19185 1.11403 1.28120 1.25382 0.86917 0.86574 0.96587 1.68175 1.25443 1.39194 0.97388 1.18939 0.88443 0.87033 0.88606 1.44887 1.68483 1.14205 1.04767 1.20737 0.93879 0.79753 0.98598 1.22173 0.95276 0.97627 1.01068 1.20954 0.97525 0.90403 0.89007 1.44341 1.03477 1.56708 1.28828 1.19487 0.94284 1.04628 1.21055 0.91641 1.25790 0.99153 0.96249 1.03203 1.70170 1.25336 1.20782 1.41691 0.85293 0.77819 0.78089 0.79334 1.21188 1.21787 1.19592 1.20508 0.83133 0.91518 0.99235 1.22305 1.00647 0.97740 0.96605 1.18609 1.16793 0.93037 0.83847 1.91447 1.93591 1.82173 1.43489 0.93422 0.92595 0.89304 0.87896 0.88865 0.75358 0.74511 0.90631 0.92677 0.91537 0.96569 0.92598 0.93998 0.98207 0.92087 0.90874 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.89 71.98 0.71 -1.16 16 2 C -0.08 -1.16 6.11 29.85 0.18 -0.98 16 3 C 0.18 3.99 6.07 42.44 0.26 4.25 16 4 N -0.55 -12.53 10.37 -188.22 -1.95 -14.48 16 5 C 0.33 7.50 12.28 180.91 2.22 9.72 16 6 N -0.58 -15.92 9.35 -197.40 -1.85 -17.77 16 7 C 0.42 11.50 7.50 133.20 1.00 12.50 16 8 N -0.69 -19.21 5.22 -323.68 -1.69 -20.90 16 9 C 0.17 5.71 2.45 45.02 0.11 5.82 16 10 C -0.12 -4.17 5.66 30.67 0.17 -4.00 16 11 C 0.15 6.14 6.52 86.36 0.56 6.70 16 12 N -0.61 -30.37 2.99 -699.10 -2.09 -32.46 16 13 C -0.26 -14.45 9.58 84.03 0.81 -13.64 16 14 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 15 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 16 N -0.93 -54.64 11.19 21.65 0.24 -54.39 16 17 Si 0.97 44.41 29.59 68.60 2.03 46.44 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 C 0.18 8.61 5.30 86.36 0.46 9.06 16 22 C -0.13 -4.78 5.55 30.67 0.17 -4.61 16 23 C -0.09 -2.30 7.32 22.66 0.17 -2.13 16 24 F -0.13 -3.02 16.07 44.97 0.72 -2.30 16 25 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.29 7.70 -2.39 -0.02 1.27 16 30 H 0.23 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.42 10.31 8.18 -92.70 -0.76 9.55 16 32 H 0.08 2.71 7.57 -2.39 -0.02 2.69 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 37 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 38 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.06 3.25 6.06 -2.38 -0.01 3.24 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -63.45 338.38 2.93 -60.52 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.28 Total: 16.06 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.24 Total: 19.29 kcal Atomic # 7 Polarization: -132.67 SS G_CDS: -7.34 Total: -140.01 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.72 Total: -2.30 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -63.45 2.93 -60.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218009972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.158 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds