Wall clock time and date at job start Tue Mar 31 2020 06:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 C 1.52994 * 109.47464 * 239.99629 * 2 1 3 5 5 C 1.50698 * 109.46862 * 119.99787 * 2 1 3 6 6 C 1.32991 * 120.00376 * 0.02562 * 5 2 1 7 7 C 1.47105 * 120.00510 * 179.72397 * 6 5 2 8 8 O 1.21613 * 119.99856 * 355.67217 * 7 6 5 9 9 N 1.34774 * 120.00070 * 175.66600 * 7 6 5 10 10 C 1.46960 * 120.59610 * 5.11601 * 9 7 6 11 11 C 1.53813 * 108.39870 * 124.75118 * 10 9 7 12 12 N 1.46969 * 108.57996 * 49.64219 * 11 10 9 13 13 C 1.34767 * 120.59932 * 124.66737 * 12 11 10 14 14 O 1.21693 * 119.99920 * 5.09667 * 13 12 11 15 15 C 1.46372 * 120.00219 * 185.09931 * 13 12 11 16 16 H 1.07998 * 120.00296 * 337.01247 * 15 13 12 17 17 C 1.40047 * 120.00074 * 157.00994 * 15 13 12 18 18 N 1.30674 * 120.00296 * 171.67948 * 17 15 13 19 19 Si 1.86805 * 120.00106 * 351.67750 * 17 15 13 20 20 H 1.48501 * 109.47207 * 84.54429 * 19 17 15 21 21 H 1.48500 * 109.47139 * 204.54917 * 19 17 15 22 22 H 1.48500 * 109.46940 * 324.54482 * 19 17 15 23 23 C 1.46966 * 118.80677 * 304.64564 * 12 11 10 24 24 C 1.46972 * 120.59208 * 185.38653 * 9 7 6 25 25 H 1.09001 * 109.46890 * 299.99899 * 1 2 3 26 26 H 1.09003 * 109.46888 * 60.00200 * 1 2 3 27 27 H 1.08999 * 109.46572 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47197 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46723 * 299.99888 * 3 2 1 30 30 H 1.09003 * 109.47009 * 59.99706 * 3 2 1 31 31 H 1.09000 * 109.47458 * 300.00350 * 4 2 1 32 32 H 1.09003 * 109.46929 * 60.00196 * 4 2 1 33 33 H 1.08994 * 109.47625 * 180.02562 * 4 2 1 34 34 H 1.08002 * 120.00374 * 180.02562 * 5 2 1 35 35 H 1.08004 * 119.99928 * 359.97438 * 6 5 2 36 36 H 1.08997 * 109.61269 * 244.53625 * 10 9 7 37 37 H 1.08999 * 109.61026 * 5.04827 * 10 9 7 38 38 H 1.08994 * 109.74529 * 289.84864 * 11 10 9 39 39 H 1.09005 * 109.53165 * 169.30306 * 11 10 9 40 40 H 0.96996 * 120.00034 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.61267 * 295.48081 * 23 12 11 42 42 H 1.09006 * 109.75252 * 175.05642 * 23 12 11 43 43 H 1.08996 * 109.60890 * 354.95454 * 24 9 7 44 44 H 1.09004 * 109.60673 * 115.46229 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2305 6 6 1.1681 -1.2162 2.1057 7 6 1.6584 -1.9149 3.3038 8 8 2.8509 -2.0993 3.4549 9 7 0.7859 -2.3507 4.2340 10 6 -0.6624 -2.2354 4.0134 11 6 -1.2896 -3.6315 4.1667 12 7 -0.8095 -4.2251 5.4226 13 6 -1.6819 -4.6610 6.3528 14 8 -2.8761 -4.6507 6.1192 15 6 -1.1929 -5.1468 7.6441 16 1 -0.1792 -5.5075 7.7367 17 6 -2.0396 -5.1438 8.7596 18 7 -1.6623 -5.7240 9.8680 19 14 -3.7086 -4.3101 8.6632 20 1 -4.6988 -5.2507 8.0802 21 1 -4.1441 -3.9152 10.0269 22 1 -3.6094 -3.1016 7.8059 23 6 0.6389 -4.3353 5.6456 24 6 1.2660 -2.9445 5.4898 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7490 -1.2492 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.0941 -0.8087 1.4017 35 1 0.1062 -1.1175 1.9348 36 1 -1.0917 -1.5558 4.7496 37 1 -0.8504 -1.8566 3.0088 38 1 -0.9946 -4.2618 3.3279 39 1 -2.3755 -3.5420 4.1961 40 1 -2.2489 -5.7222 10.6404 41 1 1.0713 -5.0158 4.9120 42 1 0.8293 -4.7120 6.6507 43 1 2.3519 -3.0340 5.4604 44 1 0.9710 -2.3141 6.3287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219505312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:59 Heat of formation + Delta-G solvation = -60.975510 kcal Electronic energy + Delta-G solvation = -24064.419196 eV Core-core repulsion = 20595.881749 eV Total energy + Delta-G solvation = -3468.537447 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.11841 -38.51947 -37.80524 -36.13706 -33.33423 -32.90441 -31.89826 -30.83010 -27.80051 -27.65759 -27.57613 -26.25683 -24.22848 -23.07215 -21.75590 -19.99196 -18.75768 -18.20929 -17.43687 -16.60893 -16.04522 -15.70415 -15.16456 -14.99697 -14.84338 -14.62099 -14.47395 -14.38513 -13.91736 -13.66988 -13.08615 -12.70057 -12.66425 -12.58447 -12.38674 -12.14547 -12.01761 -12.00968 -11.83216 -11.37613 -11.31859 -11.26868 -11.13545 -10.97434 -10.85524 -10.80820 -10.43012 -9.76980 -9.58119 -9.56193 -9.05372 -8.71046 -8.04858 -7.56422 -6.66232 -4.86800 1.31679 3.08264 3.34359 3.39292 3.42481 3.62114 4.07259 4.14710 4.26906 4.44209 4.45516 4.63445 4.74024 4.94341 5.05831 5.16964 5.24757 5.27606 5.28550 5.34016 5.43225 5.46745 5.52776 5.53676 5.55388 5.68542 5.77505 5.79797 5.84598 5.88818 5.95463 5.97957 6.15171 6.19208 6.25130 6.32814 6.40275 6.69633 6.97876 7.51070 7.55427 7.81544 8.25586 8.28186 8.65078 9.04798 9.93161 10.35301 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.030112 B = 0.003355 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.624584 B = 8343.770810 C = 8820.155912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.048 4.048 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.058 4.058 6 C -0.219 4.219 7 C 0.545 3.455 8 O -0.555 6.555 9 N -0.602 5.602 10 C 0.092 3.908 11 C 0.104 3.896 12 N -0.632 5.632 13 C 0.559 3.441 14 O -0.614 6.614 15 C -0.536 4.536 16 H 0.092 0.908 17 C 0.104 3.896 18 N -0.829 5.829 19 Si 0.959 3.041 20 H -0.274 1.274 21 H -0.316 1.316 22 H -0.269 1.269 23 C 0.108 3.892 24 C 0.096 3.904 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.282 0.718 41 H 0.051 0.949 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.920 12.344 -17.871 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.048 4.048 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.078 4.078 6 C -0.239 4.239 7 C 0.336 3.664 8 O -0.435 6.435 9 N -0.335 5.335 10 C -0.031 4.031 11 C -0.021 4.021 12 N -0.367 5.367 13 C 0.368 3.632 14 O -0.505 6.505 15 C -0.572 4.572 16 H 0.110 0.890 17 C -0.114 4.114 18 N -0.458 5.458 19 Si 0.790 3.210 20 H -0.200 1.200 21 H -0.247 1.247 22 H -0.194 1.194 23 C -0.016 4.016 24 C -0.027 4.027 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.941 12.148 -17.693 22.269 hybrid contribution -0.671 0.244 0.096 0.720 sum 5.270 12.391 -17.597 22.158 Atomic orbital electron populations 1.22022 0.94010 1.02359 1.02248 1.19778 0.96047 0.95567 0.93439 1.21830 1.01351 0.94223 1.02151 1.21826 1.01360 1.00432 0.95936 1.23683 1.00265 0.91432 0.92403 1.22898 1.01118 1.03858 0.96050 1.18612 0.85742 0.78744 0.83341 1.90744 1.15943 1.58442 1.78405 1.47985 1.06649 1.60204 1.18613 1.22388 0.79785 0.98921 1.02053 1.21692 1.00753 0.91841 0.87784 1.47754 1.05672 1.64983 1.18294 1.18403 0.84223 0.76438 0.84183 1.90267 1.16863 1.64032 1.79365 1.20713 1.01388 1.43506 0.91572 0.89023 1.25684 0.99950 0.91786 0.93939 1.69547 1.38324 1.35012 1.02960 0.85398 0.81075 0.81006 0.73506 1.20034 1.24667 1.19429 1.21879 0.81306 0.94741 1.03718 1.22130 1.00423 0.95257 0.84861 0.92030 0.92158 0.91984 0.92243 0.92079 0.92307 0.92254 0.92078 0.92237 0.85716 0.84862 0.90844 0.89350 0.92941 0.88411 0.90753 0.93077 0.87037 0.88593 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.13 37.16 0.26 -0.77 16 2 C -0.05 -0.36 0.99 -155.66 -0.15 -0.52 16 3 C -0.14 -0.92 8.46 37.16 0.31 -0.61 16 4 C -0.14 -0.94 8.46 37.15 0.31 -0.63 16 5 C -0.06 -0.59 8.33 -36.13 -0.30 -0.89 16 6 C -0.22 -2.51 8.31 -37.81 -0.31 -2.83 16 7 C 0.54 8.29 7.63 -12.66 -0.10 8.20 16 8 O -0.55 -10.11 15.64 5.27 0.08 -10.02 16 9 N -0.60 -9.21 2.94 -173.61 -0.51 -9.72 16 10 C 0.09 1.29 6.51 -3.37 -0.02 1.26 16 11 C 0.10 1.78 6.60 -3.36 -0.02 1.76 16 12 N -0.63 -13.24 2.95 -173.87 -0.51 -13.75 16 13 C 0.56 14.43 7.10 -12.99 -0.09 14.34 16 14 O -0.61 -17.26 12.41 5.19 0.06 -17.20 16 15 C -0.54 -14.68 9.19 -35.63 -0.33 -15.01 16 16 H 0.09 2.49 6.22 -52.49 -0.33 2.17 16 17 C 0.10 2.91 5.52 -17.37 -0.10 2.81 16 18 N -0.83 -23.15 13.92 55.55 0.77 -22.38 16 19 Si 0.96 24.64 25.86 -169.99 -4.40 20.24 16 20 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.32 -7.69 7.11 56.52 0.40 -7.29 16 22 H -0.27 -7.12 6.90 56.52 0.39 -6.73 16 23 C 0.11 1.97 6.50 -3.60 -0.02 1.95 16 24 C 0.10 1.57 6.60 -3.60 -0.02 1.55 16 25 H 0.06 0.43 7.50 -51.93 -0.39 0.04 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.44 7.50 -51.93 -0.39 0.05 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.13 1.41 7.50 -52.49 -0.39 1.02 16 35 H 0.13 1.27 3.58 -52.48 -0.19 1.08 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 0.93 5.34 -51.93 -0.28 0.65 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.78 7.02 -51.93 -0.36 1.42 16 40 H 0.28 7.26 8.29 -40.82 -0.34 6.93 16 41 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.11 2.15 5.43 -51.93 -0.28 1.87 16 43 H 0.10 1.53 6.99 -51.93 -0.36 1.17 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 347.09 15.07 5.23 5.23 Total: -1.00 -32.89 347.09 -6.62 -39.51 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -6.77 Total: -2.51 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.58 Total: 10.61 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.25 Total: -45.86 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: 0.15 Total: -27.22 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.40 Total: 20.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.89 -6.62 -39.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219505312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.466 kcal (2) G-P(sol) polarization free energy of solvation -32.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds